ProsmORF-pred
Result : C0H3S3
Protein Information
Information Type Description
Protein name Uncharacterized protein YwzD
NCBI Accession ID AL009126.3
Organism Bacillus subtilis (strain 168)
Left 3733505
Right 3733648
Strand -
Nucleotide Sequence ATGAGTGAAAAGAAATTGAATCAAGAAGAATTTCTGAAAATTTTGATGCATGCACATGAAATTGGTGAGCAGTCATCTGAGATGACGACGAAGGAAATGCTTGAAAATTTGATTTCTCATATTAAAAATGGATATGCAACATAA
Sequence MSEKKLNQEEFLKILMHAHEIGEQSSEMTTKEMLENLISHIKNGYAT
Source of smORF Swiss-Prot
Function
Pubmed ID 9384377
Domain
Functional Category Others
Uniprot ID C0H3S3
ORF Length (Amino Acid) 47
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Conservation Analysis
Conservation Analysis
No. of Species: 15
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 2507719 2507862 + NZ_CP029364.1 Bacillus halotolerans
2 3526748 3526891 - NZ_CP051464.1 Bacillus mojavensis
3 3733505 3733648 - NC_000964.3 Bacillus subtilis subsp. subtilis str. 168
4 3555753 3555896 - NZ_CP048852.1 Bacillus tequilensis
5 3601228 3601371 - NZ_CP013984.1 Bacillus inaquosorum
6 3545054 3545197 - NZ_CP034943.1 Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499
7 3601871 3602014 - NZ_CP033052.1 Bacillus vallismortis
8 449463 449606 + NZ_CP011937.1 Bacillus velezensis
9 3596626 3596769 - NZ_CP053376.1 Bacillus amyloliquefaciens
10 4114362 4114505 - NZ_LT603683.1 Bacillus glycinifermentans
11 3883851 3883994 - NZ_CP023665.1 Bacillus paralicheniformis
12 3683379 3683522 - NC_006270.3 Bacillus licheniformis DSM 13 = ATCC 14580
13 2009340 2009483 + NZ_CP043404.1 Bacillus safensis
14 3288851 3288994 - NZ_CP011150.1 Bacillus altitudinis
15 2066453 2066596 + NZ_CP017786.1 Bacillus xiamenensis
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Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NZ_CP029364.1
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF00455.24 0.67 10 5559.0 same-strand DeoR C terminal sensor domain
2 PF08220.14 0.67 10 5559.0 same-strand DeoR-like helix-turn-helix domain
3 PF08279.14 0.93 14 5555 same-strand HTH domain
4 PF08282.14 0.87 13 4698 same-strand haloacid dehalogenase-like hydrolase
5 PF00176.25 1.0 15 1801 opposite-strand SNF2-related domain
6 PF12419.10 1.0 15 1801 opposite-strand SNF2 Helicase protein
7 PF00271.33 1.0 15 1801 opposite-strand Helicase conserved C-terminal domain
8 PF04851.17 1.0 15 1801 opposite-strand Type III restriction enzyme, res subunit
9 PF04434.19 0.67 10 204.0 opposite-strand SWIM zinc finger
10 PF02706.17 0.8 12 226.0 same-strand Chain length determinant protein
11 PF19567.1 0.8 12 1725.0 same-strand Capsular polysaccharide synthesis, CpsB/CapC
12 PF03721.16 0.87 13 2671 same-strand UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
13 PF00984.21 0.87 13 2671 same-strand UDP-glucose/GDP-mannose dehydrogenase family, central domain
14 PF03720.17 0.87 13 2671 same-strand UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
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