Result : EXP03509
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP03509 |
| NCBI Accession ID | |
| Organism | |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | ATGAGTGATTTTGAAATTCTCTCCATAACTTTTATGGCAATGGGTATGATTGTTACTGTACTTATTGAATGGATTAAACAAAACCAAACAAAAAAGTAA |
| Sequence | MSDFEILSITFMAMGMIVTVLIEWIKQNQTKK |
| Source of smORF | Metagenomic Ribo-seq |
| Function | |
| Pubmed ID | 32601270 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 32 |
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| Conservation Analysis |
No. of Species: 3
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 683404 | 683496 | - | NZ_LT990039.1 | Massilistercora timonensis |
| 2 | 2379486 | 2379578 | - | NZ_LT635479.1 | Lachnoclostridium phocaeense |
| 3 | 249368 | 249460 | + | NZ_CP036170.1 | [Clostridium] scindens ATCC 35704 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LT990039.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF12844.9 | 0.67 | 2 | 3639 | opposite-strand | Helix-turn-helix domain |
| 2 | PF13560.8 | 0.67 | 2 | 3639 | opposite-strand | Helix-turn-helix domain |
| 3 | PF01381.24 | 0.67 | 2 | 3639 | opposite-strand | Helix-turn-helix |
| 4 | PF13443.8 | 0.67 | 2 | 3639 | opposite-strand | Cro/C1-type HTH DNA-binding domain |
++ More..