* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP012395.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF04055.23
|
1.0
|
3
|
121
|
same-strand
|
Radical SAM superfamily
|
2
|
PF13353.8
|
1.0
|
3
|
121
|
same-strand
|
4Fe-4S single cluster domain
|
3
|
PF00176.25
|
0.67
|
2
|
1441.5
|
same-strand
|
SNF2-related domain
|
4
|
PF00271.33
|
1.0
|
3
|
1446
|
same-strand
|
Helicase conserved C-terminal domain
|
5
|
PF05343.16
|
0.67
|
2
|
2647.5
|
same-strand
|
M42 glutamyl aminopeptidase
|
++ More..