Result : EXP03287
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP03287 |
| NCBI Accession ID | |
| Organism | Clostridium |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | ATGGAGACTTTTAGTTTGGAGGTGTTATTAGTGAAAAGAACTTATCAACCAAATAATAGAAAAAAAGCAAAGAAACATGGATTTTTTTCAAGAATTAAAGGTAATATAATTAATAGTCGTAGAAAAAAAGGTCGTAAAAAATTAGTTTAA |
| Sequence | METFSLEVLLVKRTYQPNNRKKAKKHGFFSRIKGNIINSRRKKGRKKLV |
| Source of smORF | Metagenomic Ribo-seq |
| Function | The ORF matches to the profile of cl00370. Profile Description: Ribosomal protein L34. 50S ribosomal protein L34; Reviewed |
| Pubmed ID | 32601270 |
| Domain | CDD:412340 |
| Functional Category | Conserved domain based functional assignment |
| Uniprot ID | |
| ORF Length (Amino Acid) | 49 |
++ More..
| Conservation Analysis |
No. of Species: 166
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3463006 | 3463143 | - | NZ_CP040887.1 | Serinicoccus chungangensis |
| 2 | 2279166 | 2279303 | - | NZ_CP009215.1 | Corynebacterium ureicelerivorans |
| 3 | 1126968 | 1127105 | + | NZ_CP061344.1 | Microbacterium hominis |
| 4 | 1716 | 1853 | + | NZ_CP018762.1 | Microbacterium aurum |
| 5 | 2865486 | 2865629 | + | NZ_CP011389.1 | Deinococcus soli (ex Cha et al. 2016) |
| 6 | 2748989 | 2749138 | - | NZ_LS483423.1 | Jonesia denitrificans |
| 7 | 4252938 | 4253087 | - | NC_013521.1 | Sanguibacter keddieii DSM 10542 |
| 8 | 1966033 | 1966182 | - | NZ_CP009302.1 | Berryella intestinalis |
| 9 | 1648163 | 1648300 | + | NZ_CP049253.1 | Microbacterium amylolyticum |
| 10 | 4128200 | 4128343 | - | NZ_LR134501.1 | Nocardiopsis dassonvillei |
| 11 | 958347 | 958484 | + | NC_014643.1 | Rothia dentocariosa ATCC 17931 |
| 12 | 564152 | 564295 | - | NC_022575.1 | Mycoplasma parvum str. Indiana |
| 13 | 4265722 | 4265871 | - | NC_015514.1 | Cellulomonas fimi ATCC 484 |
| 14 | 1798177 | 1798326 | - | NZ_CP034438.1 | Flaviflexus salsibiostraticola |
| 15 | 1039791 | 1039925 | + | NZ_CP053187.1 | Turicibacter sanguinis |
| 16 | 2791738 | 2791875 | - | NZ_CP038256.1 | Microbacterium sediminis |
| 17 | 894782 | 894916 | + | NZ_CP021886.1 | Helicobacter apodemus |
| 18 | 3649749 | 3649886 | - | NZ_CP044232.1 | Microbacterium lushaniae |
| 19 | 3827835 | 3827972 | - | NZ_CP038266.1 | Microbacterium wangchenii |
| 20 | 1864144 | 1864293 | + | NZ_CP018135.1 | Neomicrococcus aestuarii |
| 21 | 542468 | 542617 | - | NZ_CP041694.1 | Cellulosimicrobium cellulans |
| 22 | 2796676 | 2796810 | - | NC_013891.1 | Listeria seeligeri serovar 1/2b str. SLCC3954 |
| 23 | 54359 | 54493 | - | NZ_CP009577.1 | Listeria ivanovii subsp. ivanovii |
| 24 | 2943569 | 2943703 | - | NC_003210.1 | Listeria monocytogenes EGD-e |
| 25 | 2930708 | 2930851 | - | NZ_CP004353.1 | Corynebacterium vitaeruminis DSM 20294 |
| 26 | 4606685 | 4606819 | - | NZ_LT603683.1 | Bacillus glycinifermentans |
| 27 | 4624184 | 4624321 | - | NZ_CP059164.1 | Nocardioides ungokensis |
| 28 | 2992167 | 2992310 | + | NZ_CP044344.1 | Nocardioides cynanchi |
| 29 | 4586101 | 4586235 | - | NZ_CP020559.1 | Clostridium formicaceticum |
| 30 | 1920999 | 1921136 | - | NZ_CP060713.1 | Nocardioides mesophilus |
| 31 | 802990 | 803124 | + | NZ_CP045875.1 | Heliorestis convoluta |
| 32 | 2451032 | 2451175 | - | NZ_CP011311.1 | Corynebacterium camporealensis |
| 33 | 2757863 | 2758006 | - | NZ_CP009246.1 | Corynebacterium flavescens |
| 34 | 2476260 | 2476403 | - | NZ_CP039247.1 | Corynebacterium endometrii |
| 35 | 2778832 | 2778975 | - | NZ_CP009249.1 | Corynebacterium phocae |
| 36 | 170955 | 171098 | + | NZ_CP067012.1 | Corynebacterium kefirresidentii |
| 37 | 3307412 | 3307561 | - | NC_015588.1 | Isoptericola variabilis 225 |
| 38 | 3154886 | 3155038 | - | NC_010168.1 | Renibacterium salmoninarum ATCC 33209 |
| 39 | 2789247 | 2789390 | - | NC_012590.1 | Corynebacterium aurimucosum ATCC 700975 |
| 40 | 430 | 573 | - | NC_015153.1 | Mycoplasma suis KI3806 |
| 41 | 2750443 | 2750577 | - | NZ_LR134483.1 | Listeria grayi |
| 42 | 3630367 | 3630504 | - | NZ_CP045737.1 | Aeromicrobium yanjiei |
| 43 | 1681519 | 1681656 | - | NZ_LT906481.1 | Corynebacterium urealyticum |
| 44 | 1560482 | 1560625 | + | NZ_CP014635.1 | Corynebacterium simulans |
| 45 | 2706728 | 2706865 | - | NZ_LR134479.1 | Rothia aeria |
| 46 | 2357520 | 2357672 | - | NZ_CP054482.1 | Macrococcus bohemicus |
| 47 | 1723115 | 1723252 | + | NZ_AP019307.1 | Nocardioides baekrokdamisoli |
| 48 | 832151 | 832297 | + | NZ_CP029494.1 | Deinococcus irradiatisoli |
| 49 | 5222435 | 5222590 | - | NC_018014.1 | Terriglobus roseus DSM 18391 |
| 50 | 4200673 | 4200807 | - | NZ_CP009687.1 | Clostridium aceticum |
| 51 | 3717379 | 3717516 | - | NZ_CP026952.1 | Aeromicrobium chenweiae |
| 52 | 2260111 | 2260248 | - | NZ_CP035810.1 | Brevibacterium luteolum |
| 53 | 3712333 | 3712470 | - | NZ_CP038213.1 | Ornithinimicrobium flavum |
| 54 | 3806171 | 3806308 | - | NZ_CP026734.1 | Brevibacterium linens |
| 55 | 163226 | 163372 | - | NC_002771.1 | Mycoplasmopsis pulmonis UAB CTIP |
| 56 | 522437 | 522571 | + | NC_007575.1 | Sulfurimonas denitrificans DSM 1251 |
| 57 | 2048816 | 2048965 | + | NC_014363.1 | Olsenella uli DSM 7084 |
| 58 | 2079074 | 2079208 | - | NZ_AP012325.1 | Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 |
| 59 | 2191943 | 2192077 | - | NZ_CP025199.1 | Bifidobacterium pseudocatenulatum |
| 60 | 2191977 | 2192111 | - | NZ_CP028341.1 | Bifidobacterium adolescentis |
| 61 | 4222330 | 4222464 | - | NC_006270.3 | Bacillus licheniformis DSM 13 = ATCC 14580 |
| 62 | 26360 | 26494 | - | NZ_CP023665.1 | Bacillus paralicheniformis |
| 63 | 4832731 | 4832865 | + | NC_018645.1 | Desulfobacula toluolica Tol2 |
| 64 | 297071 | 297205 | + | NZ_LR215048.1 | Acholeplasma axanthum |
| 65 | 3390404 | 3390547 | - | NZ_CP011542.1 | Corynebacterium mustelae |
| 66 | 2635220 | 2635354 | - | NZ_AP012326.1 | Bifidobacterium dentium JCM 1195 = DSM 20436 |
| 67 | 1924752 | 1924886 | - | NZ_CP014161.1 | Aerococcus urinae |
| 68 | 3308480 | 3308617 | - | NZ_CP034412.1 | Glutamicibacter creatinolyticus |
| 69 | 2812861 | 2812995 | - | NZ_LT906444.1 | Listeria welshimeri |
| 70 | 641851 | 641997 | - | NZ_CP041664.1 | Mycoplasma anserisalpingitidis |
| 71 | 336621 | 336755 | + | NZ_CP034234.1 | Erysipelothrix piscisicarius |
| 72 | 90578 | 90712 | + | NZ_LR134439.1 | Erysipelothrix rhusiopathiae |
| 73 | 1615659 | 1615802 | - | NZ_CP034726.1 | Acetilactobacillus jinshanensis |
| 74 | 2830017 | 2830151 | + | NZ_CP068053.1 | Peribacillus psychrosaccharolyticus |
| 75 | 3157902 | 3158036 | - | NZ_AP012331.1 | Bifidobacterium scardovii JCM 12489 = DSM 13734 |
| 76 | 3271233 | 3271370 | - | NZ_CP033724.1 | Clavibacter michiganensis subsp. michiganensis |
| 77 | 2645598 | 2645747 | - | NZ_CP023074.1 | Enterococcus thailandicus |
| 78 | 664827 | 664976 | + | NZ_CP023011.2 | Enterococcus hirae |
| 79 | 499320 | 499457 | + | NZ_LT906453.1 | Dermatophilus congolensis |
| 80 | 849653 | 849790 | + | NZ_CP035491.1 | Agromyces protaetiae |
| 81 | 4015449 | 4015583 | - | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 82 | 4943684 | 4943818 | - | NZ_CP017476.1 | Hydrogenophaga crassostreae |
| 83 | 160804 | 160938 | + | NC_017735.1 | Helicobacter cetorum MIT 99-5656 |
| 84 | 2365420 | 2365554 | - | NZ_CP026999.1 | Bifidobacterium longum |
| 85 | 2634916 | 2635065 | - | NC_020207.1 | Enterococcus faecium ATCC 8459 = NRRL B-2354 |
| 86 | 2720060 | 2720209 | - | NZ_CP065211.1 | Enterococcus lactis |
| 87 | 1961 | 2095 | + | NZ_CP011937.1 | Bacillus velezensis |
| 88 | 135384 | 135518 | - | NZ_CP033052.1 | Bacillus vallismortis |
| 89 | 4011605 | 4011739 | - | NZ_CP048852.1 | Bacillus tequilensis |
| 90 | 4026304 | 4026438 | - | NZ_CP053376.1 | Bacillus amyloliquefaciens |
| 91 | 4030557 | 4030691 | - | NZ_CP051464.1 | Bacillus mojavensis |
| 92 | 4044785 | 4044919 | - | NZ_CP034943.1 | Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499 |
| 93 | 4119151 | 4119285 | - | NZ_CP013984.1 | Bacillus inaquosorum |
| 94 | 2009846 | 2009980 | + | NZ_CP029364.1 | Bacillus halotolerans |
| 95 | 4215255 | 4215389 | - | NC_000964.3 | Bacillus subtilis subsp. subtilis str. 168 |
| 96 | 3727949 | 3728083 | - | NZ_CP029797.1 | Paraliobacillus zengyii |
| 97 | 2441443 | 2441577 | - | NZ_CP030926.1 | Peribacillus butanolivorans |
| 98 | 2572034 | 2572168 | + | NZ_CP017704.1 | Peribacillus simplex NBRC 15720 = DSM 1321 |
| 99 | 589941 | 590090 | + | NZ_LR214972.1 | Mycoplasmopsis bovirhinis |
| 100 | 2234118 | 2234252 | + | NZ_CP008876.1 | Terribacillus goriensis |
| 101 | 1435726 | 1435863 | + | NZ_AP017457.1 | Aurantimicrobium minutum |
| 102 | 617547 | 617693 | - | NZ_CP040825.1 | Mycoplasma nasistruthionis |
| 103 | 2388804 | 2388938 | - | NZ_CP012047.1 | Tetragenococcus halophilus |
| 104 | 1350976 | 1351119 | - | NZ_CP031500.1 | Deinococcus radiodurans |
| 105 | 79235 | 79381 | - | NZ_AP022325.1 | Mycoplasmopsis felis |
| 106 | 2312786 | 2312920 | + | NC_021064.1 | Cutibacterium avidum 44067 |
| 107 | 4038095 | 4038232 | - | NZ_CP025333.1 | Brevibacterium aurantiacum |
| 108 | 1918306 | 1918443 | + | NZ_CP047156.1 | Epidermidibacterium keratini |
| 109 | 3122862 | 3123005 | - | NC_009922.1 | Alkaliphilus oremlandii OhILAs |
| 110 | 6605874 | 6606011 | - | NZ_CP022521.1 | Actinoalloteichus hoggarensis |
| 111 | 776560 | 776706 | - | NZ_LS991951.1 | Mycoplasmopsis edwardii |
| 112 | 945507 | 945653 | - | NZ_CP011368.1 | Mycoplasmopsis canis |
| 113 | 4308740 | 4308874 | - | NZ_CP065425.1 | Heyndrickxia vini |
| 114 | 3165136 | 3165270 | - | NC_010718.1 | Natranaerobius thermophilus JW/NM-WN-LF |
| 115 | 967933 | 968079 | - | NZ_LR214986.1 | Mycoplasmopsis cynos |
| 116 | 983964 | 984101 | - | NZ_AP022826.1 | Nitrosophilus labii |
| 117 | 2873005 | 2873142 | - | NZ_CP035495.1 | Xylanimonas allomyrinae |
| 118 | 105056 | 105190 | - | NZ_CP053989.1 | Niallia circulans |
| 119 | 2767081 | 2767218 | + | NZ_CP066060.1 | Actinomyces oris |
| 120 | 751389 | 751535 | - | NC_010503.1 | Ureaplasma parvum serovar 3 str. ATCC 27815 |
| 121 | 874176 | 874322 | - | NC_011374.1 | Ureaplasma urealyticum serovar 10 str. ATCC 33699 |
| 122 | 87487 | 87633 | + | NZ_LR215024.1 | Mycoplasmopsis glycophila |
| 123 | 1090412 | 1090555 | - | NZ_CP053562.1 | Thioclava electrotropha |
| 124 | 21256 | 21408 | + | NZ_CP045927.1 | Staphylococcus agnetis |
| 125 | 2471454 | 2471606 | - | NZ_CP008747.1 | Staphylococcus hyicus |
| 126 | 1960972 | 1961109 | + | NC_020304.1 | Desulfocapsa sulfexigens DSM 10523 |
| 127 | 2021534 | 2021668 | - | NZ_AP012322.1 | Bifidobacterium angulatum DSM 20098 = JCM 7096 |
| 128 | 746998 | 747153 | + | NC_009614.1 | Phocaeicola vulgatus ATCC 8482 |
| 129 | 798946 | 799101 | + | NZ_LR699004.1 | Phocaeicola dorei |
| 130 | 641684 | 641818 | - | NZ_CP018044.1 | Bifidobacterium choerinum |
| 131 | 506535 | 506681 | + | NZ_LR214950.1 | Mycoplasmopsis gallinacea |
| 132 | 2202793 | 2202927 | - | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 133 | 2680564 | 2680698 | + | NZ_CP038439.1 | Paracoccus liaowanqingii |
| 134 | 4150327 | 4150461 | - | NC_017668.1 | Halobacillus halophilus DSM 2266 |
| 135 | 708436 | 708582 | - | NZ_CP029258.1 | Mycoplasmopsis synoviae |
| 136 | 1808601 | 1808759 | - | NZ_CP053698.1 | Empedobacter stercoris |
| 137 | 2888471 | 2888629 | - | NZ_CP040908.1 | Empedobacter falsenii |
| 138 | 1321783 | 1321941 | + | NZ_CP013210.1 | Empedobacter brevis |
| 139 | 399434 | 399577 | - | NZ_CP022753.1 | Nocardiopsis gilva YIM 90087 |
| 140 | 81021 | 81158 | - | NZ_LT906467.1 | Corynebacterium imitans |
| 141 | 1898661 | 1898804 | - | NC_015499.1 | Thermodesulfobium narugense DSM 14796 |
| 142 | 1315281 | 1315424 | - | NZ_CP019437.1 | Thioclava nitratireducens |
| 143 | 2101924 | 2102061 | - | NC_015702.1 | Parachlamydia acanthamoebae UV-7 |
| 144 | 7033861 | 7033995 | + | NZ_CP061800.1 | Desulfonema magnum |
| 145 | 4194595 | 4194750 | - | NC_018018.1 | Bernardetia litoralis DSM 6794 |
| 146 | 1115603 | 1115743 | - | NZ_LR134476.1 | Trueperella bialowiezensis |
| 147 | 856520 | 856654 | + | NZ_CP046314.1 | Gemella morbillorum |
| 148 | 1925414 | 1925548 | - | NZ_LR134484.1 | Gemella haemolysans |
| 149 | 569648 | 569782 | - | NZ_CP042906.1 | Hypericibacter terrae |
| 150 | 685525 | 685671 | + | NZ_LR215039.1 | Mycoplasmopsis columboralis |
| 151 | 3628861 | 3628998 | - | NZ_CP011502.1 | Aeromicrobium erythreum |
| 152 | 1987557 | 1987712 | + | NZ_LR215980.1 | Paraprevotella xylaniphila YIT 11841 |
| 153 | 3059571 | 3059705 | - | NC_014207.1 | Methylotenera versatilis 301 |
| 154 | 682834 | 682980 | - | NZ_LR215036.1 | Mycoplasmopsis citelli |
| 155 | 2604513 | 2604671 | - | NZ_CP034120.1 | Glaciecola amylolytica |
| 156 | 2442915 | 2443052 | - | NC_008578.1 | Acidothermus cellulolyticus 11B |
| 157 | 1990831 | 1990965 | + | NZ_AP019711.1 | Amedibacterium intestinale |
| 158 | 2094228 | 2094365 | - | NZ_LT906464.1 | Staphylococcus muscae |
| 159 | 136035 | 136172 | + | NZ_CP065712.1 | Staphylococcus auricularis |
| 160 | 2568560 | 2568697 | - | NZ_CP064056.1 | Staphylococcus lloydii |
| 161 | 2609932 | 2610069 | - | NZ_LR134089.1 | Staphylococcus saprophyticus |
| 162 | 2757189 | 2757326 | - | NZ_CP008724.1 | Staphylococcus xylosus |
| 163 | 535 | 672 | + | NZ_CP013114.1 | Staphylococcus equorum |
| 164 | 10341016 | 10341153 | - | NC_013595.1 | Streptosporangium roseum DSM 43021 |
| 165 | 458740 | 458895 | + | NC_015921.1 | Borreliella bissettii DN127 |
| 166 | 458315 | 458470 | + | NZ_CP044535.1 | Borrelia maritima |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP061344.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01424.24 | 0.62 | 103 | 1623 | same-strand | R3H domain |
| 2 | PF02096.22 | 0.75 | 124 | 674.0 | same-strand | 60Kd inner membrane protein |
| 3 | PF00825.20 | 0.64 | 106 | 74.0 | same-strand | Ribonuclease P |
++ More..