* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_AP012325.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF07730.15
|
0.67
|
4
|
4279.0
|
opposite-strand
|
Histidine kinase
|
2
|
PF14748.8
|
0.67
|
4
|
1898.0
|
same-strand
|
Pyrroline-5-carboxylate reductase dimerisation
|
3
|
PF03807.19
|
0.67
|
4
|
1898.0
|
same-strand
|
NADP oxidoreductase coenzyme F420-dependent
|
4
|
PF06071.15
|
0.67
|
4
|
783.5
|
same-strand
|
Protein of unknown function (DUF933)
|
5
|
PF03733.15
|
0.83
|
5
|
264
|
opposite-strand
|
Inner membrane component domain
|
6
|
PF07690.18
|
1.0
|
6
|
231.0
|
same-strand
|
Major Facilitator Superfamily
|
7
|
PF00571.30
|
1.0
|
6
|
231.0
|
same-strand
|
CBS domain
|
++ More..