Result : B9E1Z3
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | RNA-binding protein Hfq |
| NCBI Accession ID | AP009049.1 |
| Organism | Clostridium kluyveri (strain NBRC 12016) |
| Left | 1657648 |
| Right | 1657896 |
| Strand | + |
| Nucleotide Sequence | ATGAGTAAACCAGCAAACAATTTACAGGACATATTCTTAAATGGTGCTAGAAAAAACAGGATCCCGGTTATTGTATACTTAACTAATGGTTTTCAGATTAGAGGAATTGTAAAAGGTTTTGATAATTTTACGGTTATATTAGAGTGTGATGGAAAACAAATGATGGTATATAAACATGCACTTTCTACTATTACACCATCAAAAGCAATTCTGTTTAATACTCCTGCAGGAACAGATGACAGGTCATAA |
| Sequence | MSKPANNLQDIFLNGARKNRIPVIVYLTNGFQIRGIVKGFDNFTVILECDGKQMMVYKHALSTITPSKAILFNTPAGTDDRS |
| Source of smORF | Swiss-Prot |
| Function | RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. {ECO:0000255|HAMAP-Rule:MF_00436}. |
| Pubmed ID | |
| Domain | CDD:412267 |
| Functional Category | RNA-binding |
| Uniprot ID | B9E1Z3 |
| ORF Length (Amino Acid) | 82 |
++ More..
| Conservation Analysis |
No. of Species: 278
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1657648 | 1657896 | + | NC_011837.1 | Clostridium kluyveri NBRC 12016 |
| 2 | 214680 | 214922 | - | NZ_CP012395.1 | Clostridium autoethanogenum DSM 10061 |
| 3 | 2308555 | 2308797 | - | NC_014328.1 | Clostridium ljungdahlii DSM 13528 |
| 4 | 1895110 | 1895361 | - | NZ_CP040924.1 | Clostridium thermarum |
| 5 | 1495139 | 1495375 | - | NZ_CP032416.1 | Clostridium fermenticellae |
| 6 | 1526591 | 1526833 | + | NZ_CP014170.1 | Clostridium tyrobutyricum |
| 7 | 1985066 | 1985323 | - | NZ_CP011663.1 | Clostridium sporogenes |
| 8 | 1917139 | 1917396 | - | NZ_CP028842.1 | Clostridium botulinum |
| 9 | 2685392 | 2685646 | - | NZ_CP020953.1 | Clostridium drakei |
| 10 | 1718166 | 1718420 | - | NZ_CP011803.1 | Clostridium carboxidivorans P7 |
| 11 | 1565839 | 1566093 | + | NZ_CP009933.1 | Clostridium scatologenes |
| 12 | 1986922 | 1987143 | - | NC_015687.1 | Clostridium acetobutylicum DSM 1731 |
| 13 | 1443341 | 1443571 | - | NZ_CP027286.1 | Clostridium chauvoei |
| 14 | 1599739 | 1599981 | + | NZ_CP014204.2 | Clostridium baratii |
| 15 | 2095161 | 2095409 | + | NZ_CP013019.1 | Clostridium pasteurianum |
| 16 | 34538 | 34768 | + | NZ_CP023671.1 | Clostridium septicum |
| 17 | 1373713 | 1373964 | + | NZ_HG917868.1 | Clostridium bornimense |
| 18 | 2525793 | 2526041 | - | NZ_CP014176.1 | Clostridium argentinense |
| 19 | 1662280 | 1662513 | - | NZ_CP017253.2 | Clostridium taeniosporum |
| 20 | 2894711 | 2894956 | - | NZ_CP043998.1 | Clostridium diolis |
| 21 | 3251518 | 3251763 | + | NZ_CP071376.1 | Clostridium gasigenes |
| 22 | 2439437 | 2439676 | + | NC_014393.1 | Clostridium cellulovorans 743B |
| 23 | 3518204 | 3518449 | + | NC_020291.1 | Clostridium saccharoperbutylacetonicum N1-4(HMT) |
| 24 | 1023134 | 1023376 | + | NZ_CP016786.1 | Clostridium isatidis |
| 25 | 1111905 | 1112144 | - | NZ_LT906477.1 | Clostridium cochlearium |
| 26 | 1538508 | 1538750 | + | NC_008261.1 | Clostridium perfringens ATCC 13124 |
| 27 | 2553095 | 2553340 | - | NC_022571.1 | Clostridium saccharobutylicum DSM 13864 |
| 28 | 1617316 | 1617600 | - | NZ_CP024955.1 | Kyrpidia spormannii |
| 29 | 1974428 | 1974670 | + | NC_021184.1 | Desulfoscipio gibsoniae DSM 7213 |
| 30 | 1985835 | 1986077 | + | NC_021184.1 | Desulfoscipio gibsoniae DSM 7213 |
| 31 | 1884945 | 1885193 | - | NZ_CP025197.1 | Acetivibrio saccincola |
| 32 | 1836739 | 1836969 | - | NZ_CP030775.1 | Clostridium butyricum |
| 33 | 1547196 | 1547456 | + | NC_013205.1 | Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 |
| 34 | 2065750 | 2065992 | - | NC_009253.1 | Desulfotomaculum reducens MI-1 |
| 35 | 1307898 | 1308131 | + | NC_008593.1 | Clostridium novyi NT |
| 36 | 1643292 | 1643576 | + | NC_014098.1 | Kyrpidia tusciae DSM 2912 |
| 37 | 2595577 | 2595834 | - | NZ_CP059066.1 | Koleobacter methoxysyntrophicus |
| 38 | 1113758 | 1114006 | + | NC_008346.1 | Syntrophomonas wolfei subsp. wolfei str. Goettingen G311 |
| 39 | 251216 | 251446 | - | NZ_LR130778.1 | Petrocella atlantisensis |
| 40 | 2002633 | 2002875 | + | NC_015589.1 | Desulfotomaculum ruminis DSM 2154 |
| 41 | 2068 | 2313 | - | NZ_CP017270.1 | Geosporobacter ferrireducens |
| 42 | 5783691 | 5783936 | - | NZ_CP017269.1 | Geosporobacter ferrireducens |
| 43 | 1218017 | 1218226 | + | NC_014964.1 | Thermoanaerobacter brockii subsp. finnii Ako-1 |
| 44 | 1328271 | 1328480 | + | NC_015958.1 | Thermoanaerobacter wiegelii Rt8.B1 |
| 45 | 1215615 | 1215833 | + | NC_014209.1 | Thermoanaerobacter mathranii subsp. mathranii str. A3 |
| 46 | 1190302 | 1190520 | + | NC_013921.1 | Thermoanaerobacter italicus Ab9 |
| 47 | 1911124 | 1911366 | - | NZ_CP019698.1 | Desulfotomaculum ferrireducens |
| 48 | 2453111 | 2453353 | - | NZ_CP061336.1 | Ruminiclostridium herbifermentans |
| 49 | 1113288 | 1113539 | + | NC_014220.1 | Syntrophothermus lipocalidus DSM 12680 |
| 50 | 2609821 | 2610051 | - | NZ_CP022657.1 | Tumebacillus algifaecis |
| 51 | 3816019 | 3816249 | + | NZ_CP021434.1 | Tumebacillus avium |
| 52 | 1024491 | 1024727 | + | NZ_CP068564.1 | Keratinibaculum paraultunense |
| 53 | 1539261 | 1539506 | + | NZ_CP046996.1 | Dehalobacter restrictus |
| 54 | 2308972 | 2309214 | + | NC_013216.1 | Desulfofarcimen acetoxidans DSM 771 |
| 55 | 5900775 | 5900981 | - | NZ_CP068595.1 | Paenibacillus sonchi |
| 56 | 4492814 | 4493020 | - | NZ_LN831776.1 | Paenibacillus riograndensis SBR5 |
| 57 | 2038748 | 2038990 | - | NC_011898.1 | Ruminiclostridium cellulolyticum H10 |
| 58 | 1377587 | 1377841 | + | NC_014410.1 | Thermoanaerobacterium thermosaccharolyticum DSM 571 |
| 59 | 3523189 | 3523419 | + | NZ_CP063356.1 | Anaerobacillus isosaccharinicus |
| 60 | 2013971 | 2014180 | - | NZ_CP009687.1 | Clostridium aceticum |
| 61 | 3045043 | 3045282 | - | NC_018068.1 | Desulfosporosinus acidiphilus SJ4 |
| 62 | 2043239 | 2043457 | - | NZ_CP021850.1 | Pseudoclostridium thermosuccinogenes |
| 63 | 1737675 | 1737902 | - | NZ_AP019004.1 | Phascolarctobacterium faecium |
| 64 | 3273225 | 3273434 | - | NZ_CP009286.1 | Paenibacillus stellifer |
| 65 | 2830452 | 2830685 | - | NZ_CP015756.1 | Clostridium estertheticum subsp. estertheticum |
| 66 | 1709553 | 1709798 | + | NZ_CP016502.1 | Acetivibrio thermocellus DSM 2360 |
| 67 | 1218708 | 1218917 | + | NZ_CP009170.1 | Thermoanaerobacter kivui |
| 68 | 1309080 | 1309334 | + | NC_015555.1 | Thermoanaerobacterium xylanolyticum LX-11 |
| 69 | 1386228 | 1386482 | + | NZ_CP047602.1 | Thermoanaerobacterium aotearoense |
| 70 | 5902725 | 5902931 | - | NZ_CP048429.1 | Paenibacillus jilunlii |
| 71 | 3993818 | 3994024 | - | NZ_CP009287.1 | Paenibacillus graminis |
| 72 | 871944 | 872180 | - | NZ_CP045798.1 | Thermoanaerosceptrum fracticalcis |
| 73 | 1844183 | 1844422 | - | NC_019897.1 | Thermobacillus composti KWC4 |
| 74 | 3011337 | 3011543 | - | NZ_CP019699.1 | Novibacillus thermophilus |
| 75 | 2461681 | 2461908 | - | NC_015275.1 | Cellulosilyticum lentocellum DSM 5427 |
| 76 | 3587809 | 3588015 | - | NZ_CP009288.1 | Paenibacillus durus |
| 77 | 747122 | 747331 | + | NZ_CP025286.1 | Ethanoligenens harbinense YUAN-3 |
| 78 | 1787413 | 1787664 | - | NC_015172.1 | Syntrophobotulus glycolicus DSM 8271 |
| 79 | 1898116 | 1898361 | - | NZ_CP048103.1 | Kroppenstedtia eburnea |
| 80 | 2805080 | 2805325 | + | NZ_CP026520.1 | Paenibacillus chitinolyticus |
| 81 | 1343768 | 1343977 | + | NC_003869.1 | Caldanaerobacter subterraneus subsp. tengcongensis MB4 |
| 82 | 3819187 | 3819393 | - | NZ_CP009428.1 | Paenibacillus odorifer |
| 83 | 3378346 | 3378555 | - | NZ_CP021780.1 | Paenibacillus donghaensis |
| 84 | 2072007 | 2072207 | + | NZ_CP036259.1 | Sporomusa termitida |
| 85 | 1402879 | 1403151 | - | NC_018870.1 | Thermacetogenium phaeum DSM 12270 |
| 86 | 1409762 | 1410010 | - | NZ_CP034118.1 | Staphylospora marina |
| 87 | 1369940 | 1370197 | + | NC_015519.1 | Tepidanaerobacter acetatoxydans Re1 |
| 88 | 3479276 | 3479518 | + | NZ_AP019400.1 | Cohnella abietis |
| 89 | 1928123 | 1928380 | - | NC_013385.1 | Ammonifex degensii KC4 |
| 90 | 4096123 | 4096359 | - | NZ_CP034235.1 | Paenibacillus psychroresistens |
| 91 | 2210059 | 2210259 | - | NZ_CP020559.1 | Clostridium formicaceticum |
| 92 | 1156090 | 1156347 | - | NC_014377.1 | Thermosediminibacter oceani DSM 16646 |
| 93 | 1885432 | 1885683 | - | NC_019903.1 | Desulfitobacterium dichloroeliminans LMG P-21439 |
| 94 | 1072152 | 1072406 | + | NZ_CP017237.1 | Moorella thermoacetica |
| 95 | 1406427 | 1406669 | + | NZ_CP039710.1 | Thermoactinomyces vulgaris |
| 96 | 2591398 | 2591655 | - | NC_018515.1 | Desulfosporosinus meridiei DSM 13257 |
| 97 | 1247858 | 1248100 | + | NC_014378.1 | Acetohalobium arabaticum DSM 5501 |
| 98 | 1282588 | 1282827 | + | NZ_AP019308.1 | Paenibacillus baekrokdamisoli |
| 99 | 2926629 | 2926880 | - | NC_011830.1 | Desulfitobacterium hafniense DCB-2 |
| 100 | 2198881 | 2199132 | - | NC_018017.1 | Desulfitobacterium dehalogenans ATCC 51507 |
| 101 | 2482052 | 2482288 | - | NC_002570.2 | Alkalihalobacillus halodurans C-125 |
| 102 | 1518498 | 1518752 | + | NZ_CP007032.1 | Desulfitobacterium metallireducens DSM 15288 |
| 103 | 3313957 | 3314217 | - | NC_016584.1 | Desulfosporosinus orientis DSM 765 |
| 104 | 5505735 | 5505977 | - | NZ_CP041217.1 | Saccharibacillus brassicae |
| 105 | 1246953 | 1247210 | - | NC_007503.1 | Carboxydothermus hydrogenoformans Z-2901 |
| 106 | 1878112 | 1878345 | - | NZ_CP012502.1 | Bacillus beveridgei |
| 107 | 1417035 | 1417244 | - | NZ_CP035492.1 | Paenibacillus protaetiae |
| 108 | 1831570 | 1831794 | + | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 109 | 2641855 | 2642061 | + | NZ_CP034346.1 | Paenibacillus lutimineralis |
| 110 | 1377681 | 1377896 | + | NZ_LR590481.1 | Hathewaya histolytica |
| 111 | 3089640 | 3089864 | + | NZ_CP013661.2 | Planococcus kocurii |
| 112 | 2170762 | 2170986 | - | NZ_CP019401.1 | Planococcus faecalis |
| 113 | 2433043 | 2433273 | - | NZ_CP017560.1 | Sporosarcina ureilytica |
| 114 | 2031377 | 2031604 | - | NZ_CP014342.1 | Geobacillus subterraneus |
| 115 | 1663838 | 1664068 | + | NZ_CP009416.1 | Jeotgalibacillus malaysiensis |
| 116 | 2458455 | 2458679 | - | NZ_CP018866.1 | Sutcliffiella cohnii |
| 117 | 757553 | 757777 | + | NZ_CP064060.1 | Anoxybacillus caldiproteolyticus |
| 118 | 2718321 | 2718557 | + | NZ_CP022121.1 | Dehalobacterium formicoaceticum |
| 119 | 1336945 | 1337175 | + | NC_006510.1 | Geobacillus kaustophilus HTA426 |
| 120 | 425911 | 426141 | + | NZ_CP061470.1 | Geobacillus zalihae |
| 121 | 2645782 | 2646012 | - | NZ_CP018058.1 | Geobacillus thermocatenulatus |
| 122 | 786675 | 786905 | + | NZ_CP061472.1 | Geobacillus thermoleovorans |
| 123 | 2226857 | 2227087 | - | NC_013791.2 | Alkalihalobacillus pseudofirmus OF4 |
| 124 | 1294655 | 1294900 | - | NZ_CP007452.1 | Peptoclostridium acidaminophilum DSM 3953 |
| 125 | 2606542 | 2606775 | - | NC_014829.1 | Evansella cellulosilytica DSM 2522 |
| 126 | 1659629 | 1659838 | - | NC_009922.1 | Alkaliphilus oremlandii OhILAs |
| 127 | 1946456 | 1946680 | + | NZ_CP016622.1 | Parageobacillus thermoglucosidasius |
| 128 | 2582670 | 2582879 | - | NC_009633.1 | Alkaliphilus metalliredigens QYMF |
| 129 | 2040870 | 2041094 | - | NZ_CP016540.2 | Planococcus versutus |
| 130 | 3875270 | 3875494 | - | NZ_CP024035.1 | Priestia aryabhattai |
| 131 | 1878999 | 1879223 | - | NZ_CP016539.2 | Planococcus plakortidis |
| 132 | 1678794 | 1679021 | - | NZ_LR134483.1 | Listeria grayi |
| 133 | 1987144 | 1987368 | - | NZ_CP017962.1 | Virgibacillus halodenitrificans |
| 134 | 1680421 | 1680630 | - | NZ_CP038012.1 | Sporosarcina pasteurii |
| 135 | 1761350 | 1761595 | - | NZ_CP048104.1 | Kroppenstedtia pulmonis |
| 136 | 1133146 | 1133397 | + | NC_010556.1 | Exiguobacterium sibiricum 255-15 |
| 137 | 1636585 | 1636809 | + | NZ_CP040336.1 | Bacillus luti |
| 138 | 3516246 | 3516470 | - | NC_007530.2 | Bacillus anthracis str. 'Ames Ancestor' |
| 139 | 3540573 | 3540797 | - | NZ_CP064875.1 | Bacillus toyonensis |
| 140 | 3723957 | 3724181 | - | NC_011725.1 | Bacillus cereus B4264 |
| 141 | 3720821 | 3721045 | - | NZ_CP032365.1 | Bacillus wiedmannii |
| 142 | 2553956 | 2554189 | - | NZ_LS483476.1 | Lederbergia lentus |
| 143 | 1774868 | 1775104 | + | NZ_CP015378.1 | Fictibacillus phosphorivorans |
| 144 | 2470816 | 2471040 | - | NZ_CP024109.1 | Bacillus cytotoxicus |
| 145 | 1754109 | 1754345 | - | NZ_CP012024.1 | Bacillus smithii |
| 146 | 3187772 | 3187972 | + | NZ_CP031092.1 | Salicibibacter kimchii |
| 147 | 1549681 | 1549905 | + | NZ_CP015438.1 | Anoxybacillus amylolyticus |
| 148 | 263667 | 263909 | - | NZ_CP017705.1 | Brevibacillus laterosporus DSM 25 |
| 149 | 2746597 | 2746803 | + | NZ_CP026363.1 | Brevibacillus agri |
| 150 | 2556045 | 2556251 | + | NZ_LR134338.1 | Brevibacillus brevis |
| 151 | 2531312 | 2531551 | + | NZ_CP053989.1 | Niallia circulans |
| 152 | 1233729 | 1233950 | - | NZ_CP035130.1 | Gudongella oleilytica |
| 153 | 2652317 | 2652541 | - | NZ_CP070511.1 | Parageobacillus toebii |
| 154 | 29177 | 29407 | - | NZ_CP022983.1 | Cytobacillus kochii |
| 155 | 819145 | 819378 | - | NZ_CP017704.1 | Peribacillus simplex NBRC 15720 = DSM 1321 |
| 156 | 3137478 | 3137687 | + | NZ_CP015108.1 | Sporosarcina ureae |
| 157 | 3187799 | 3188011 | + | NC_018020.1 | Turneriella parva DSM 21527 |
| 158 | 2439438 | 2439668 | - | NZ_CP065425.1 | Heyndrickxia vini |
| 159 | 4798259 | 4798489 | - | NZ_CP041305.1 | Cytobacillus ciccensis |
| 160 | 1901334 | 1901558 | - | NZ_CP016538.2 | Planococcus maritimus |
| 161 | 1925205 | 1925429 | - | NZ_CP059540.1 | Planococcus maritimus |
| 162 | 1656365 | 1656589 | - | NZ_CP013659.2 | Planococcus rifietoensis |
| 163 | 63172 | 63414 | + | NZ_HF545617.1 | Ruminococcus bicirculans |
| 164 | 4393900 | 4394133 | + | NZ_CP030926.1 | Peribacillus butanolivorans |
| 165 | 1892673 | 1892906 | + | NC_022524.1 | Bacillus infantis NRRL B-14911 |
| 166 | 3167601 | 3167813 | - | NZ_CP014616.1 | Sporosarcina psychrophila |
| 167 | 2313946 | 2314170 | - | NZ_CP016534.2 | Planococcus antarcticus DSM 14505 |
| 168 | 258340 | 258570 | + | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 169 | 1100715 | 1100936 | - | NZ_CP068053.1 | Peribacillus psychrosaccharolyticus |
| 170 | 1233509 | 1233742 | + | NC_013891.1 | Listeria seeligeri serovar 1/2b str. SLCC3954 |
| 171 | 1302017 | 1302250 | + | NZ_LT906444.1 | Listeria welshimeri |
| 172 | 1349798 | 1350031 | + | NZ_CP009577.1 | Listeria ivanovii subsp. ivanovii |
| 173 | 1323450 | 1323683 | + | NC_003210.1 | Listeria monocytogenes EGD-e |
| 174 | 122950 | 123216 | + | NC_009718.1 | Fervidobacterium nodosum Rt17-B1 |
| 175 | 1725569 | 1725796 | - | NC_014758.1 | Calditerrivibrio nitroreducens DSM 19672 |
| 176 | 1387148 | 1387381 | + | NC_014614.1 | Acetoanaerobium sticklandii |
| 177 | 1543793 | 1543996 | + | NZ_AP021853.1 | Sporolactobacillus terrae |
| 178 | 1179555 | 1179779 | + | NZ_CP035108.1 | Geovibrio thiophilus |
| 179 | 977965 | 978225 | + | NZ_CP046052.1 | Methylocystis heyeri |
| 180 | 3248481 | 3248720 | - | NZ_CP040818.1 | Paraoceanicella profunda |
| 181 | 1083394 | 1083618 | + | NC_013939.1 | Deferribacter desulfuricans SSM1 |
| 182 | 2076066 | 2076299 | - | NZ_CP012661.1 | Defluviimonas alba |
| 183 | 2897457 | 2897705 | + | NZ_CP030265.1 | Skermanella pratensis |
| 184 | 1449752 | 1450000 | - | NZ_CP029353.1 | Azospirillum thermophilum |
| 185 | 2577727 | 2577948 | + | NC_007626.1 | Magnetospirillum magneticum AMB-1 |
| 186 | 1192037 | 1192282 | - | NZ_CP018221.1 | Tardibacter chloracetimidivorans |
| 187 | 1012168 | 1012416 | - | NZ_CP029829.1 | Azospirillum ramasamyi |
| 188 | 1686756 | 1687004 | + | NZ_CP054619.1 | Azospirillum oryzae |
| 189 | 2641590 | 2641838 | - | NZ_CP012401.1 | Azospirillum thiophilum |
| 190 | 1661905 | 1662138 | + | NZ_CP011102.1 | Listeria weihenstephanensis |
| 191 | 2725997 | 2726230 | - | NZ_CP024899.1 | Rhodobaca barguzinensis |
| 192 | 606377 | 606613 | - | NZ_CP051181.1 | Thalassobius gelatinovorus |
| 193 | 2192813 | 2193043 | + | NZ_CP042593.1 | Bacillus dafuensis |
| 194 | 650537 | 650776 | - | NZ_CP027407.1 | Roseobacter denitrificans |
| 195 | 1848076 | 1848315 | + | NC_015730.1 | Roseobacter litoralis Och 149 |
| 196 | 2726985 | 2727233 | + | NZ_CP072611.1 | Aureimonas populi |
| 197 | 1806489 | 1806728 | + | NZ_CP054599.1 | Sulfitobacter pseudonitzschiae |
| 198 | 1264200 | 1264475 | + | NC_017033.1 | Frateuria aurantia DSM 6220 |
| 199 | 1763487 | 1763699 | - | NZ_LN824141.1 | Defluviitoga tunisiensis |
| 200 | 722769 | 723002 | - | NZ_CP061498.1 | Roseicitreum antarcticum |
| 201 | 3600366 | 3600566 | - | NZ_CP010820.1 | Lysinibacillus fusiformis |
| 202 | 3421391 | 3421624 | - | NZ_CP014327.1 | Halocynthiibacter arcticus |
| 203 | 807790 | 808029 | - | NZ_CP060436.1 | Pseudooceanicola algae |
| 204 | 2052112 | 2052351 | + | NZ_CP033219.1 | Parasedimentitalea marina |
| 205 | 1060744 | 1060983 | + | NZ_CP045201.1 | Pseudopuniceibacterium antarcticum |
| 206 | 1856990 | 1857214 | - | NC_013943.1 | Denitrovibrio acetiphilus DSM 12809 |
| 207 | 1913234 | 1913473 | - | NZ_CP048788.1 | Roseobacter ponti |
| 208 | 952376 | 952609 | - | NZ_CP042261.1 | Qingshengfaniella alkalisoli |
| 209 | 1600476 | 1600694 | + | NC_018664.1 | Gottschalkia acidurici 9a |
| 210 | 2926032 | 2926286 | + | NZ_CP039546.1 | Methylorubrum populi |
| 211 | 1086869 | 1087105 | - | NC_010103.1 | Brucella canis ATCC 23365 |
| 212 | 1087977 | 1088213 | - | NC_004310.3 | Brucella suis 1330 |
| 213 | 1089984 | 1090220 | - | NC_009505.1 | Brucella ovis ATCC 25840 |
| 214 | 1093531 | 1093767 | - | NC_013119.1 | Brucella microti CCM 4915 |
| 215 | 900419 | 900655 | + | NC_003317.1 | Brucella melitensis bv. 1 str. 16M |
| 216 | 900532 | 900768 | + | NC_022905.1 | Brucella ceti TE10759-12 |
| 217 | 1102489 | 1102725 | - | NC_007618.1 | Brucella abortus 2308 |
| 218 | 1779534 | 1779770 | - | NZ_LT605585.1 | Brucella inopinata |
| 219 | 1184892 | 1185128 | - | NZ_CP022604.1 | [Ochrobactrum] quorumnocens |
| 220 | 1181670 | 1181906 | + | NZ_CP064063.1 | Brucella anthropi |
| 221 | 1758584 | 1758823 | + | NZ_CP017940.1 | Phyllobacterium zundukense |
| 222 | 2082638 | 2082877 | - | NZ_AP022873.1 | Dissulfurispira thermophila |
| 223 | 6632833 | 6633087 | + | NC_011894.1 | Methylobacterium nodulans ORS 2060 |
| 224 | 1701080 | 1701313 | + | NZ_CP003984.1 | Planktomarina temperata RCA23 |
| 225 | 2655468 | 2655716 | - | NZ_CP026671.1 | Leptospira borgpetersenii serovar Ceylonica |
| 226 | 3415518 | 3415766 | - | NZ_CP030142.1 | Leptospira mayottensis |
| 227 | 3776483 | 3776731 | + | NZ_CP033614.1 | Leptospira kmetyi |
| 228 | 2928720 | 2928968 | - | NZ_CP040840.1 | Leptospira weilii |
| 229 | 1501814 | 1502062 | + | NZ_CP015217.1 | Leptospira tipperaryensis |
| 230 | 5638264 | 5638518 | - | NZ_CP029553.1 | Methylobacterium terrae |
| 231 | 1628620 | 1628856 | - | NZ_CP032125.1 | Profundibacter amoris |
| 232 | 1489852 | 1490091 | + | NZ_CP010855.1 | Marinovum algicola DG 898 |
| 233 | 1990569 | 1990799 | - | NZ_CP021404.1 | Pacificitalea manganoxidans |
| 234 | 855 | 1109 | + | NZ_CP016616.1 | Microvirga ossetica |
| 235 | 435688 | 435921 | - | NZ_CP020470.1 | Rhodobacter blasticus |
| 236 | 3075499 | 3075744 | + | NZ_AP014946.1 | Variibacter gotjawalensis |
| 237 | 1343337 | 1343570 | - | NZ_CP035510.1 | Haematobacter massiliensis |
| 238 | 438597 | 438836 | + | NZ_CP049037.1 | Pseudohalocynthiibacter aestuariivivens |
| 239 | 2103497 | 2103757 | - | NZ_CP012946.1 | Blastochloris viridis |
| 240 | 1548414 | 1548641 | + | NZ_CP018911.1 | Glycocaulis alkaliphilus |
| 241 | 1191357 | 1191557 | + | NZ_CP006837.1 | Lysinibacillus varians |
| 242 | 3481604 | 3481804 | - | NZ_CP019980.1 | Lysinibacillus sphaericus |
| 243 | 2292260 | 2292505 | + | NC_022997.1 | Hyphomicrobium nitrativorans NL23 |
| 244 | 3912506 | 3912742 | + | NZ_CP048436.1 | Flavonifractor plautii |
| 245 | 2078378 | 2078626 | - | NC_015684.1 | Afipia carboxidovorans OM5 |
| 246 | 2653944 | 2654195 | + | NZ_CP052766.1 | Alteromonas pelagimontana |
| 247 | 867727 | 867936 | + | NC_017934.1 | Mesotoga prima MesG1.Ag.4.2 |
| 248 | 4307564 | 4307812 | + | NZ_CP042968.1 | Bradyrhizobium paxllaeri |
| 249 | 2052001 | 2052249 | + | NC_007964.1 | Nitrobacter hamburgensis X14 |
| 250 | 1579848 | 1580096 | + | NC_007406.1 | Nitrobacter winogradskyi Nb-255 |
| 251 | 2766525 | 2766773 | + | NZ_CP058907.1 | Rhodopseudomonas palustris |
| 252 | 5937954 | 5938202 | - | NZ_CP050066.1 | Bradyrhizobium symbiodeficiens |
| 253 | 3279028 | 3279276 | + | NZ_CP029426.1 | Bradyrhizobium amphicarpaeae |
| 254 | 6983087 | 6983335 | - | NZ_CP044543.1 | Bradyrhizobium betae |
| 255 | 3808510 | 3808758 | - | NZ_CP030053.1 | Bradyrhizobium guangzhouense |
| 256 | 3159529 | 3159777 | + | NZ_CP022219.1 | Bradyrhizobium guangxiense |
| 257 | 3795847 | 3796095 | - | NC_017082.1 | Bradyrhizobium cosmicum |
| 258 | 3990084 | 3990332 | + | NZ_CP030051.1 | Bradyrhizobium guangdongense |
| 259 | 4174113 | 4174361 | - | NZ_LS398110.1 | Bradyrhizobium vignae |
| 260 | 4442194 | 4442442 | - | NC_020453.1 | Bradyrhizobium oligotrophicum S58 |
| 261 | 4324694 | 4324942 | - | NZ_CP016428.1 | Bradyrhizobium icense |
| 262 | 6540238 | 6540486 | - | NZ_CP029425.1 | Bradyrhizobium ottawaense |
| 263 | 4911006 | 4911254 | + | NZ_CP032617.1 | Bradyrhizobium diazoefficiens |
| 264 | 4726440 | 4726688 | + | NZ_CP058354.1 | Bradyrhizobium japonicum |
| 265 | 5288065 | 5288313 | + | NZ_CP030050.1 | Bradyrhizobium arachidis |
| 266 | 5207966 | 5208214 | - | NZ_CP022221.1 | Bradyrhizobium zhanjiangense |
| 267 | 2234295 | 2234525 | + | NZ_AP014648.1 | Methyloceanibacter caenitepidi |
| 268 | 1488950 | 1489150 | + | NC_010003.1 | Petrotoga mobilis SJ95 |
| 269 | 1407129 | 1407338 | - | NC_004757.1 | Nitrosomonas europaea ATCC 19718 |
| 270 | 3494450 | 3494659 | - | NZ_CP017689.1 | Thalassotalea crassostreae |
| 271 | 1437222 | 1437479 | + | NZ_CP020038.1 | Agarilytica rhodophyticola |
| 272 | 2429636 | 2429878 | + | NZ_LS974202.1 | Mesotoga infera |
| 273 | 3817126 | 3817326 | + | NZ_CP025491.2 | Legionella sainthelensi |
| 274 | 18863 | 19063 | + | NC_013861.1 | Legionella longbeachae NSW150 |
| 275 | 1974424 | 1974669 | - | NZ_CP012373.2 | Beggiatoa leptomitoformis |
| 276 | 3265600 | 3265803 | - | NZ_CP016397.1 | Legionella clemsonensis |
| 277 | 2232834 | 2233052 | - | NZ_CP018787.1 | Oxalobacter formigenes |
| 278 | 375392 | 375634 | + | NZ_LT615228.1 | Polynucleobacter necessarius |
| 279 | 992166 | 992387 | + | NC_008344.1 | Nitrosomonas eutropha C91 |
| 280 | 282586 | 282816 | - | NZ_CP072793.1 | Thiothrix unzii |
| 281 | 51172 | 51426 | - | NZ_CP068345.1 | Succinivibrio dextrinosolvens |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_011837.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01715.19 | 0.69 | 192 | 45.0 | same-strand | IPP transferase |
++ More..