* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR699004.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF18291.3
|
1.0
|
2
|
3554.5
|
opposite-strand
|
HU domain fused to wHTH, Ig, or Glycine-rich motif
|
2
|
PF14848.8
|
1.0
|
2
|
3554.5
|
opposite-strand
|
DNA-binding domain
|
3
|
PF14053.8
|
1.0
|
2
|
2990.5
|
opposite-strand
|
Domain of unknown function (DUF4248)
|
4
|
PF13148.8
|
1.0
|
2
|
893.0
|
opposite-strand
|
Protein of unknown function (DUF3987)
|
5
|
PF08707.13
|
1.0
|
2
|
893.0
|
opposite-strand
|
Primase C terminal 2 (PriCT-2)
|
6
|
PF08800.12
|
1.0
|
2
|
159.5
|
opposite-strand
|
VirE N-terminal domain
|
7
|
PF00271.33
|
1.0
|
2
|
1719.0
|
same-strand
|
Helicase conserved C-terminal domain
|
++ More..