Result : B8I3I4
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S20 |
| NCBI Accession ID | CP001348.1 |
| Organism | Ruminiclostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) (Clostridium cellulolyticum) |
| Left | 2342482 |
| Right | 2342739 |
| Strand | + |
| Nucleotide Sequence | GTGCCAAACATTAAATCTGCTATAAAGAGAGTTAAGGTAAACGAGGCCAAGACTTTGGAGAACACTATTAGAAAGTCAGCACTCAAGACTACTATTAAGAAGTGTAAGGAAGCTATCGTTACTGGTGAAAATACGTCTGACGCTTACACAGCAGCAACAAAGGCTTTAGATAAAGCCGCAGCAAAGAACATATTGCATAAAAACACCGCTGCGAGAAAGAAATCCAGATTAGCAAAAGCTTTAAATGCAGCAAAATAA |
| Sequence | MPNIKSAIKRVKVNEAKTLENTIRKSALKTTIKKCKEAIVTGENTSDAYTAATKALDKAAAKNILHKNTAARKKSRLAKALNAAK |
| Source of smORF | Swiss-Prot |
| Function | Binds directly to 16S ribosomal RNA. {ECO:0000255|HAMAP-Rule:MF_00500}. |
| Pubmed ID | |
| Domain | CDD:412349 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | B8I3I4 |
| ORF Length (Amino Acid) | 85 |
++ More..
| Conservation Analysis |
No. of Species: 258
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2342482 | 2342739 | + | NC_011898.1 | Ruminiclostridium cellulolyticum H10 |
| 2 | 2048423 | 2048683 | - | NZ_CP061336.1 | Ruminiclostridium herbifermentans |
| 3 | 1400883 | 1401152 | - | NZ_CP016502.1 | Acetivibrio thermocellus DSM 2360 |
| 4 | 2131040 | 2131303 | + | NZ_CP021850.1 | Pseudoclostridium thermosuccinogenes |
| 5 | 1620070 | 1620330 | - | NZ_CP025197.1 | Acetivibrio saccincola |
| 6 | 2828653 | 2828913 | + | NZ_CP025286.1 | Ethanoligenens harbinense YUAN-3 |
| 7 | 2922448 | 2922714 | + | NC_016627.1 | Acetivibrio clariflavus DSM 19732 |
| 8 | 1561092 | 1561340 | - | NZ_CP010820.1 | Lysinibacillus fusiformis |
| 9 | 2865308 | 2865580 | - | NZ_CP034235.1 | Paenibacillus psychroresistens |
| 10 | 2948989 | 2949252 | + | NZ_CP030775.1 | Clostridium butyricum |
| 11 | 1628655 | 1628918 | + | NZ_LR590481.1 | Hathewaya histolytica |
| 12 | 3482276 | 3482542 | + | NZ_CP053989.1 | Niallia circulans |
| 13 | 1733744 | 1734013 | + | NZ_CP045875.1 | Heliorestis convoluta |
| 14 | 3429591 | 3429857 | + | NZ_CP042593.1 | Bacillus dafuensis |
| 15 | 1002107 | 1002370 | - | NC_020291.1 | Clostridium saccharoperbutylacetonicum N1-4(HMT) |
| 16 | 277452 | 277700 | + | NZ_CP013661.2 | Planococcus kocurii |
| 17 | 1505418 | 1505666 | - | NZ_CP019401.1 | Planococcus faecalis |
| 18 | 1662079 | 1662342 | - | NZ_LS483476.1 | Lederbergia lentus |
| 19 | 3346896 | 3347162 | - | NZ_CP041305.1 | Cytobacillus ciccensis |
| 20 | 1641457 | 1641717 | + | NZ_HG917868.1 | Clostridium bornimense |
| 21 | 974007 | 974270 | - | NZ_CP043998.1 | Clostridium diolis |
| 22 | 6751188 | 6751460 | + | NC_017672.3 | Paenibacillus mucilaginosus K02 |
| 23 | 751066 | 751332 | + | NZ_CP030926.1 | Peribacillus butanolivorans |
| 24 | 4408964 | 4409230 | - | NZ_CP017704.1 | Peribacillus simplex NBRC 15720 = DSM 1321 |
| 25 | 90688 | 90954 | + | NZ_CP063356.1 | Anaerobacillus isosaccharinicus |
| 26 | 2949305 | 2949577 | + | NZ_CP019659.1 | Paenibacillus larvae subsp. larvae |
| 27 | 3418501 | 3418767 | + | NZ_CP022657.1 | Tumebacillus algifaecis |
| 28 | 1431926 | 1432177 | - | NZ_CP016540.2 | Planococcus versutus |
| 29 | 1981373 | 1981636 | + | NZ_CP014204.2 | Clostridium baratii |
| 30 | 5154317 | 5154589 | + | NZ_CP026520.1 | Paenibacillus chitinolyticus |
| 31 | 1085717 | 1085983 | - | NC_013791.2 | Alkalihalobacillus pseudofirmus OF4 |
| 32 | 2939750 | 2940016 | - | NZ_CP021434.1 | Tumebacillus avium |
| 33 | 2956820 | 2957086 | + | NZ_CP014176.1 | Clostridium argentinense |
| 34 | 902348 | 902620 | - | NZ_CP013652.1 | Paenibacillus naphthalenovorans |
| 35 | 5305178 | 5305450 | + | NZ_CP021780.1 | Paenibacillus donghaensis |
| 36 | 1195561 | 1195824 | - | NC_022571.1 | Clostridium saccharobutylicum DSM 13864 |
| 37 | 2418421 | 2418687 | - | NC_010337.2 | Heliomicrobium modesticaldum Ice1 |
| 38 | 4203774 | 4204046 | + | NC_018068.1 | Desulfosporosinus acidiphilus SJ4 |
| 39 | 766971 | 767243 | - | NZ_CP033433.1 | Cohnella candidum |
| 40 | 879717 | 879980 | - | NZ_CP017253.2 | Clostridium taeniosporum |
| 41 | 633032 | 633304 | - | NZ_CP046996.1 | Dehalobacter restrictus |
| 42 | 1494849 | 1495097 | - | NZ_CP016539.2 | Planococcus plakortidis |
| 43 | 2548089 | 2548352 | + | NC_008261.1 | Clostridium perfringens ATCC 13124 |
| 44 | 5297975 | 5298247 | + | NZ_CP009428.1 | Paenibacillus odorifer |
| 45 | 472908 | 473174 | - | NZ_CP020953.1 | Clostridium drakei |
| 46 | 3774083 | 3774349 | + | NZ_CP009933.1 | Clostridium scatologenes |
| 47 | 284235 | 284507 | + | NZ_CP048429.1 | Paenibacillus jilunlii |
| 48 | 5548366 | 5548638 | + | NZ_CP009287.1 | Paenibacillus graminis |
| 49 | 260500 | 260772 | + | NZ_CP068595.1 | Paenibacillus sonchi |
| 50 | 6082503 | 6082775 | + | NZ_LN831776.1 | Paenibacillus riograndensis SBR5 |
| 51 | 530998 | 531261 | + | NZ_CP023671.1 | Clostridium septicum |
| 52 | 1583955 | 1584203 | - | NZ_CP016534.2 | Planococcus antarcticus DSM 14505 |
| 53 | 3692896 | 3693168 | + | NC_018017.1 | Desulfitobacterium dehalogenans ATCC 51507 |
| 54 | 3070013 | 3070285 | + | NC_019903.1 | Desulfitobacterium dichloroeliminans LMG P-21439 |
| 55 | 3827086 | 3827352 | + | NZ_CP017703.1 | Aeribacillus pallidus |
| 56 | 1437190 | 1437444 | + | NZ_LR134483.1 | Listeria grayi |
| 57 | 4575886 | 4576158 | + | NC_011830.1 | Desulfitobacterium hafniense DCB-2 |
| 58 | 5244179 | 5244445 | - | NZ_CP011803.1 | Clostridium carboxidivorans P7 |
| 59 | 1418990 | 1419256 | - | NC_015687.1 | Clostridium acetobutylicum DSM 1731 |
| 60 | 3383131 | 3383397 | + | NC_022524.1 | Bacillus infantis NRRL B-14911 |
| 61 | 664146 | 664409 | - | NZ_CP029256.1 | Christensenella minuta |
| 62 | 1723165 | 1723431 | + | NC_008593.1 | Clostridium novyi NT |
| 63 | 1409967 | 1410218 | - | NZ_CP016543.2 | Planococcus donghaensis |
| 64 | 1464852 | 1465103 | - | NZ_CP016537.2 | Planococcus halocryophilus |
| 65 | 1894866 | 1895120 | + | NZ_CP011102.1 | Listeria weihenstephanensis |
| 66 | 2486200 | 2486472 | + | NC_015172.1 | Syntrophobotulus glycolicus DSM 8271 |
| 67 | 2603291 | 2603563 | + | NZ_CP007032.1 | Desulfitobacterium metallireducens DSM 15288 |
| 68 | 4311547 | 4311819 | + | NZ_CP013023.1 | Paenibacillus bovis |
| 69 | 2402608 | 2402874 | + | NZ_CP014170.1 | Clostridium tyrobutyricum |
| 70 | 1734855 | 1735127 | + | NZ_CP035492.1 | Paenibacillus protaetiae |
| 71 | 6276105 | 6276377 | + | NZ_CP009285.1 | Paenibacillus borealis |
| 72 | 1845735 | 1846007 | + | NZ_CP054614.1 | Paenibacillus barcinonensis |
| 73 | 3284688 | 3284960 | + | NZ_CP015756.1 | Clostridium estertheticum subsp. estertheticum |
| 74 | 784388 | 784648 | + | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 75 | 895200 | 895466 | - | NC_011837.1 | Clostridium kluyveri NBRC 12016 |
| 76 | 3359032 | 3359298 | + | NZ_CP011663.1 | Clostridium sporogenes |
| 77 | 4179713 | 4179985 | + | NZ_CP009286.1 | Paenibacillus stellifer |
| 78 | 3091855 | 3092103 | + | NZ_CP006837.1 | Lysinibacillus varians |
| 79 | 1562212 | 1562460 | - | NZ_CP019980.1 | Lysinibacillus sphaericus |
| 80 | 1211730 | 1211978 | - | NZ_CP013659.2 | Planococcus rifietoensis |
| 81 | 3457402 | 3457668 | + | NC_013216.1 | Desulfofarcimen acetoxidans DSM 771 |
| 82 | 2586172 | 2586438 | + | NZ_CP015438.1 | Anoxybacillus amylolyticus |
| 83 | 466916 | 467188 | + | NZ_CP045298.1 | Paenibacillus brasilensis |
| 84 | 1855223 | 1855495 | - | NZ_CP020028.1 | Paenibacillus kribbensis |
| 85 | 1320667 | 1320939 | + | NZ_CP048286.1 | Paenibacillus rhizovicinus |
| 86 | 2432230 | 2432484 | - | NZ_CP034465.1 | Jeotgalibaca ciconiae |
| 87 | 3297144 | 3297416 | - | NZ_CP011388.1 | Paenibacillus swuensis |
| 88 | 3126925 | 3127191 | + | NZ_CP028842.1 | Clostridium botulinum |
| 89 | 3125387 | 3125653 | - | NZ_CP012395.1 | Clostridium autoethanogenum DSM 10061 |
| 90 | 875801 | 876067 | - | NC_014328.1 | Clostridium ljungdahlii DSM 13528 |
| 91 | 1790410 | 1790664 | - | NZ_CP016843.1 | Carnobacterium divergens |
| 92 | 2079575 | 2079829 | + | NZ_CP009416.1 | Jeotgalibacillus malaysiensis |
| 93 | 2337478 | 2337750 | - | NZ_CP048209.1 | Paenibacillus lycopersici |
| 94 | 4035097 | 4035363 | - | NZ_CP068053.1 | Peribacillus psychrosaccharolyticus |
| 95 | 3454838 | 3455107 | + | NZ_CP016622.1 | Parageobacillus thermoglucosidasius |
| 96 | 4242136 | 4242408 | - | NZ_CP011058.1 | Paenibacillus beijingensis |
| 97 | 1594864 | 1595127 | - | NZ_CP065425.1 | Heyndrickxia vini |
| 98 | 4717399 | 4717671 | + | NZ_CP043611.1 | Paenibacillus antarcticus |
| 99 | 4332809 | 4333075 | + | NZ_CP024035.1 | Priestia aryabhattai |
| 100 | 1734268 | 1734528 | - | NC_014393.1 | Clostridium cellulovorans 743B |
| 101 | 1982122 | 1982385 | + | NZ_CP016786.1 | Clostridium isatidis |
| 102 | 3141566 | 3141832 | + | NZ_CP018866.1 | Sutcliffiella cohnii |
| 103 | 2149612 | 2149878 | + | NZ_CP064060.1 | Anoxybacillus caldiproteolyticus |
| 104 | 2035281 | 2035547 | + | NZ_AP021853.1 | Sporolactobacillus terrae |
| 105 | 531603 | 531857 | - | NZ_CP019728.1 | Jeotgalibaca dankookensis |
| 106 | 2491396 | 2491662 | + | NZ_CP013019.1 | Clostridium pasteurianum |
| 107 | 2547825 | 2548097 | + | NZ_CP014167.1 | Paenibacillus yonginensis |
| 108 | 1013923 | 1014174 | + | NZ_CP044496.1 | Lactobacillus acetotolerans |
| 109 | 1426491 | 1426745 | + | NC_013891.1 | Listeria seeligeri serovar 1/2b str. SLCC3954 |
| 110 | 2335015 | 2335281 | + | NZ_CP032416.1 | Clostridium fermenticellae |
| 111 | 1423793 | 1424068 | - | NC_002570.2 | Alkalihalobacillus halodurans C-125 |
| 112 | 1651 | 1905 | - | NC_014314.1 | Dehalogenimonas lykanthroporepellens BL-DC-9 |
| 113 | 1314639 | 1314905 | - | NZ_AP017312.1 | Aneurinibacillus soli |
| 114 | 23639 | 23902 | + | NZ_CP048436.1 | Flavonifractor plautii |
| 115 | 3870304 | 3870576 | + | NZ_CP004078.1 | Paenibacillus sabinae T27 |
| 116 | 687235 | 687507 | - | NZ_CP045293.1 | Paenibacillus guangzhouensis |
| 117 | 3257594 | 3257860 | + | NC_014624.2 | Eubacterium callanderi |
| 118 | 4112589 | 4112855 | - | NZ_CP029487.1 | Eubacterium maltosivorans |
| 119 | 857682 | 857933 | - | NZ_CP029544.1 | Lactobacillus helsingborgensis |
| 120 | 2726250 | 2726516 | + | NC_009253.1 | Desulfotomaculum reducens MI-1 |
| 121 | 5575305 | 5575577 | + | NC_016641.1 | Paenibacillus terrae HPL-003 |
| 122 | 2844367 | 2844639 | - | NZ_CP034437.1 | Paenibacillus albus |
| 123 | 983759 | 984022 | - | NZ_CP039710.1 | Thermoactinomyces vulgaris |
| 124 | 573632 | 573922 | - | NC_020134.1 | Thermoclostridium stercorarium subsp. stercorarium DSM 8532 |
| 125 | 4501134 | 4501406 | + | NZ_CP009288.1 | Paenibacillus durus |
| 126 | 1317771 | 1318025 | - | NZ_CP017713.1 | Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 |
| 127 | 1985983 | 1986255 | - | NZ_CP034346.1 | Paenibacillus lutimineralis |
| 128 | 1956861 | 1957127 | - | NC_016894.1 | Acetobacterium woodii DSM 1030 |
| 129 | 1925137 | 1925403 | - | NZ_CP019962.1 | Eubacterium limosum |
| 130 | 3447627 | 3447890 | - | NZ_CP022983.1 | Cytobacillus kochii |
| 131 | 1061761 | 1062018 | - | NZ_CP040336.1 | Bacillus luti |
| 132 | 4136729 | 4136986 | + | NC_007530.2 | Bacillus anthracis str. 'Ames Ancestor' |
| 133 | 4172249 | 4172506 | + | NZ_CP064875.1 | Bacillus toyonensis |
| 134 | 1778048 | 1778305 | + | NZ_LT906477.1 | Clostridium cochlearium |
| 135 | 747599 | 747868 | - | NZ_CP014342.1 | Geobacillus subterraneus |
| 136 | 1998337 | 1998591 | - | NZ_CP023392.1 | Lactococcus raffinolactis |
| 137 | 1357429 | 1357677 | - | NZ_CP038015.1 | Paenisporosarcina antarctica |
| 138 | 4345747 | 4346004 | + | NZ_CP032365.1 | Bacillus wiedmannii |
| 139 | 2724750 | 2725013 | + | NZ_CP053187.1 | Turicibacter sanguinis |
| 140 | 1425834 | 1426103 | - | NZ_CP070511.1 | Parageobacillus toebii |
| 141 | 1557608 | 1557862 | + | NZ_CP030105.1 | Lactiplantibacillus plantarum |
| 142 | 2791442 | 2791708 | + | NZ_CP015378.1 | Fictibacillus phosphorivorans |
| 143 | 4306676 | 4306933 | + | NC_011725.1 | Bacillus cereus B4264 |
| 144 | 2890825 | 2891097 | + | NZ_AP019308.1 | Paenibacillus baekrokdamisoli |
| 145 | 2532216 | 2532485 | + | NC_006510.1 | Geobacillus kaustophilus HTA426 |
| 146 | 1733055 | 1733324 | + | NZ_CP061470.1 | Geobacillus zalihae |
| 147 | 1404000 | 1404269 | - | NZ_CP018058.1 | Geobacillus thermocatenulatus |
| 148 | 3405030 | 3405299 | - | NZ_CP061472.1 | Geobacillus thermoleovorans |
| 149 | 3091974 | 3092231 | + | NZ_CP024109.1 | Bacillus cytotoxicus |
| 150 | 789737 | 790012 | + | NZ_CP041217.1 | Saccharibacillus brassicae |
| 151 | 1974129 | 1974395 | + | NZ_CP012152.1 | Anoxybacillus gonensis |
| 152 | 4185380 | 4185652 | + | NC_018515.1 | Desulfosporosinus meridiei DSM 13257 |
| 153 | 1548001 | 1548255 | + | NZ_CP009577.1 | Listeria ivanovii subsp. ivanovii |
| 154 | 1513917 | 1514171 | + | NC_003210.1 | Listeria monocytogenes EGD-e |
| 155 | 1887014 | 1887274 | + | NC_014654.1 | Halanaerobium hydrogeniformans |
| 156 | 1093862 | 1094128 | - | NZ_LS483427.1 | Arcanobacterium haemolyticum |
| 157 | 823782 | 824039 | - | NC_021181.2 | Lactobacillus acidophilus La-14 |
| 158 | 966673 | 966936 | - | NZ_CP027286.1 | Clostridium chauvoei |
| 159 | 5222055 | 5222327 | + | NC_016584.1 | Desulfosporosinus orientis DSM 765 |
| 160 | 2658258 | 2658521 | + | NZ_CP019698.1 | Desulfotomaculum ferrireducens |
| 161 | 4630322 | 4630594 | + | NZ_AP019400.1 | Cohnella abietis |
| 162 | 4976568 | 4976831 | + | NZ_AP018920.1 | Pseudonocardia autotrophica |
| 163 | 426985 | 427245 | + | NC_013895.2 | Mageeibacillus indolicus UPII9-5 |
| 164 | 1491010 | 1491264 | + | NZ_LT906444.1 | Listeria welshimeri |
| 165 | 137010 | 137273 | + | NZ_CP071376.1 | Clostridium gasigenes |
| 166 | 5050239 | 5050505 | - | NZ_CP023701.1 | Streptomyces subrutilus |
| 167 | 3443249 | 3443515 | + | NZ_CP034539.1 | Streptomyces cyaneochromogenes |
| 168 | 2053248 | 2053535 | + | NC_013205.1 | Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 |
| 169 | 3403045 | 3403311 | + | NZ_CP071139.1 | Streptomyces nojiriensis |
| 170 | 1370820 | 1371092 | + | NZ_CP016809.1 | Paenibacillus ihbetae |
| 171 | 617854 | 618111 | - | NZ_CP015444.1 | Lactobacillus helveticus |
| 172 | 2587395 | 2587661 | + | NZ_CP023703.1 | Streptomyces galilaeus |
| 173 | 1538873 | 1539145 | + | NZ_CP045295.1 | Paenibacillus cellulositrophicus |
| 174 | 1390274 | 1390531 | + | NZ_CP059829.1 | Lactobacillus ultunensis |
| 175 | 2298769 | 2299029 | + | NZ_CP012024.1 | Bacillus smithii |
| 176 | 1815113 | 1815364 | - | NZ_HF545616.1 | Ruminococcus bicirculans |
| 177 | 3127758 | 3128024 | + | NZ_CP071839.1 | Streptomyces cyanogenus |
| 178 | 9219878 | 9220138 | + | NZ_CP016279.1 | Streptomyces griseochromogenes |
| 179 | 6577073 | 6577339 | - | NZ_CP017248.1 | Streptomyces fodineus |
| 180 | 3675085 | 3675351 | + | NZ_CP034463.1 | Streptomyces aquilus |
| 181 | 4966585 | 4966851 | - | NZ_CP023692.1 | Streptomyces vinaceus |
| 182 | 1473930 | 1474187 | - | NZ_CP044499.1 | Lapidilactobacillus dextrinicus |
| 183 | 2464086 | 2464349 | + | NZ_CP009687.1 | Clostridium aceticum |
| 184 | 2548780 | 2549028 | + | NZ_CP031223.1 | Psychrobacillus glaciei |
| 185 | 1161188 | 1161454 | - | NC_015589.1 | Desulfotomaculum ruminis DSM 2154 |
| 186 | 5034069 | 5034308 | + | NZ_CP031142.1 | Saccharopolyspora pogona |
| 187 | 1293178 | 1293444 | - | NZ_CP040924.1 | Clostridium thermarum |
| 188 | 2649903 | 2650166 | + | NZ_CP020559.1 | Clostridium formicaceticum |
| 189 | 1063696 | 1063980 | - | NC_015958.1 | Thermoanaerobacter wiegelii Rt8.B1 |
| 190 | 1444089 | 1444361 | + | NZ_CP007452.1 | Peptoclostridium acidaminophilum DSM 3953 |
| 191 | 2204081 | 2204347 | + | NZ_CP042266.1 | Streptomyces qinzhouensis |
| 192 | 6607472 | 6607738 | - | NZ_CP022744.1 | Streptomyces lincolnensis |
| 193 | 3566850 | 3567116 | + | NZ_CP023690.1 | Streptomyces spectabilis |
| 194 | 2161262 | 2161528 | + | NZ_CP020563.1 | Kitasatospora albolonga |
| 195 | 5879846 | 5880112 | - | NC_010572.1 | Streptomyces griseus subsp. griseus NBRC 13350 |
| 196 | 3056649 | 3056915 | + | NZ_CP059991.1 | Streptomyces gardneri |
| 197 | 5303151 | 5303417 | - | NZ_CP023702.1 | Streptomyces nitrosporeus |
| 198 | 5793472 | 5793738 | - | NZ_CP011340.1 | Streptomyces pristinaespiralis |
| 199 | 2375749 | 2376015 | + | NZ_CP020700.1 | Streptomyces tsukubensis |
| 200 | 1963583 | 1963849 | + | NZ_CP032229.1 | Streptomyces seoulensis |
| 201 | 2378823 | 2379089 | + | NZ_CP029043.1 | Streptomyces nigra |
| 202 | 2740693 | 2740959 | + | NZ_CP063374.1 | Streptomyces chromofuscus |
| 203 | 2406169 | 2406435 | + | NZ_CP029196.1 | Streptomyces venezuelae |
| 204 | 5825089 | 5825355 | - | NZ_CP026652.1 | Streptomyces dengpaensis |
| 205 | 1838326 | 1838592 | - | NZ_CP063373.1 | Streptomyces ferrugineus |
| 206 | 2010411 | 2010674 | + | NZ_CP034413.2 | Dysosmobacter welbionis |
| 207 | 2260700 | 2260966 | + | NZ_CP070242.1 | Streptomyces californicus |
| 208 | 2247973 | 2248239 | + | NZ_CP020570.1 | Streptomyces violaceoruber |
| 209 | 2463673 | 2463936 | + | NC_014387.1 | Butyrivibrio proteoclasticus B316 |
| 210 | 3041876 | 3042142 | + | NZ_CP027306.1 | Streptomyces atratus |
| 211 | 4986353 | 4986619 | - | NC_020990.1 | Streptomyces albidoflavus |
| 212 | 5286196 | 5286462 | - | NZ_CP031742.1 | Streptomyces koyangensis |
| 213 | 2834670 | 2834936 | + | NZ_CP010407.1 | Streptomyces vietnamensis |
| 214 | 4987821 | 4988087 | - | NZ_CP034279.1 | Streptomyces ficellus |
| 215 | 6321515 | 6321775 | - | NZ_CP032427.1 | Streptomyces griseorubiginosus |
| 216 | 2107074 | 2107340 | + | NZ_CP024957.1 | Streptomyces cavourensis |
| 217 | 3863651 | 3863911 | + | NZ_AP022610.1 | Mycolicibacterium madagascariense |
| 218 | 2574808 | 2575074 | + | NZ_CP023693.1 | Streptomyces cinereoruber |
| 219 | 955763 | 956029 | + | NZ_CP040887.1 | Serinicoccus chungangensis |
| 220 | 252082 | 252333 | + | NC_014833.1 | Ruminococcus albus 7 = DSM 20455 |
| 221 | 6396023 | 6396289 | - | NZ_AP023440.1 | Streptomyces glomeroaurantiacus |
| 222 | 1773073 | 1773339 | - | NC_014829.1 | Evansella cellulosilytica DSM 2522 |
| 223 | 1468541 | 1468807 | + | NZ_CP029254.1 | Streptomyces spongiicola |
| 224 | 2995257 | 2995523 | + | NZ_CP045096.1 | Streptomyces phaeolivaceus |
| 225 | 1465963 | 1466214 | - | NZ_CP018888.1 | Amylolactobacillus amylophilus DSM 20533 = JCM 1125 |
| 226 | 2051815 | 2052081 | + | NZ_CP031194.1 | Streptomyces paludis |
| 227 | 6724561 | 6724827 | - | NC_003155.5 | Streptomyces avermitilis MA-4680 = NBRC 14893 |
| 228 | 775890 | 776153 | - | NZ_CP022413.2 | Blautia hansenii DSM 20583 |
| 229 | 1814169 | 1814435 | + | NZ_CP029188.1 | Streptomyces tirandamycinicus |
| 230 | 5105086 | 5105352 | - | NZ_CP023202.1 | Streptomyces xinghaiensis S187 |
| 231 | 5702621 | 5702887 | + | NZ_CP030862.1 | Streptomyces globosus |
| 232 | 685487 | 685738 | - | NZ_AP019750.1 | Lactobacillus delbrueckii subsp. delbrueckii |
| 233 | 6746776 | 6747042 | + | NZ_CP051486.1 | Streptomyces pratensis |
| 234 | 2439986 | 2440252 | + | NZ_CP013738.1 | Streptomyces globisporus C-1027 |
| 235 | 6258077 | 6258343 | - | NZ_CP060404.1 | Streptomyces buecherae |
| 236 | 5165704 | 5165973 | - | NZ_CP023698.1 | Streptomyces viridifaciens |
| 237 | 1640163 | 1640423 | - | NZ_CP039126.1 | Blautia producta |
| 238 | 2728512 | 2728784 | - | NZ_CP034248.1 | Paenibacillus lentus |
| 239 | 2744211 | 2744474 | + | NZ_CP030280.1 | Blautia argi |
| 240 | 1334732 | 1334998 | + | NZ_CP031356.1 | Brachybacterium saurashtrense |
| 241 | 2338140 | 2338403 | - | NC_015275.1 | Cellulosilyticum lentocellum DSM 5427 |
| 242 | 734179 | 734430 | + | NZ_CP031088.1 | Spiroplasma phoeniceum P40 |
| 243 | 942552 | 942812 | - | NZ_CP025120.1 | Kangiella profundi |
| 244 | 1806488 | 1806748 | + | NC_013166.1 | Kangiella koreensis DSM 16069 |
| 245 | 2467600 | 2467866 | + | NZ_CP040752.1 | Streptomyces rectiverticillatus |
| 246 | 1115205 | 1115465 | - | NZ_CP045737.1 | Aeromicrobium yanjiei |
| 247 | 5809274 | 5809540 | - | NZ_CP032698.1 | Streptomyces hundungensis |
| 248 | 925402 | 925653 | - | NZ_CP029477.1 | Lactobacillus kullabergensis |
| 249 | 1550690 | 1550950 | - | NZ_CP049257.1 | Nocardioides anomalus |
| 250 | 3699519 | 3699785 | + | NZ_CP070326.1 | Streptomyces noursei |
| 251 | 729806 | 730057 | - | NZ_CP029476.1 | Lactobacillus apis |
| 252 | 1305071 | 1305322 | + | NZ_CP010899.1 | Spiroplasma kunkelii CR2-3x |
| 253 | 171683 | 171934 | - | NZ_CP013197.1 | Spiroplasma citri |
| 254 | 779795 | 780046 | + | NZ_CP031835.1 | Lactobacillus amylolyticus |
| 255 | 919709 | 919927 | - | NZ_CP029494.1 | Deinococcus irradiatisoli |
| 256 | 1169939 | 1170190 | + | NZ_CP018809.1 | Lactobacillus jensenii |
| 257 | 1424320 | 1424598 | - | NZ_CP013910.1 | Deinococcus actinosclerus |
| 258 | 3108981 | 3109259 | - | NZ_CP011389.1 | Deinococcus soli (ex Cha et al. 2016) |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP010820.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF06144.15 | 0.91 | 234 | 122.5 | opposite-strand | DNA polymerase III, delta subunit |
| 2 | PF03772.18 | 0.69 | 177 | 1591 | opposite-strand | Competence protein |
| 3 | PF00009.29 | 0.8 | 207 | 2941 | opposite-strand | Elongation factor Tu GTP binding domain |
| 4 | PF06421.14 | 0.75 | 194 | 2613.0 | opposite-strand | GTP-binding protein LepA C-terminus |
| 5 | PF00679.26 | 0.76 | 195 | 2653 | opposite-strand | Elongation factor G C-terminus |
| 6 | PF03144.27 | 0.8 | 206 | 2940.5 | opposite-strand | Elongation factor Tu domain 2 |
| 7 | PF01926.25 | 0.6 | 156 | 3156.5 | opposite-strand | 50S ribosome-binding GTPase |
++ More..