* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_011916.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00889.21
|
0.62
|
5
|
5515
|
same-strand
|
Elongation factor TS
|
2
|
PF00318.22
|
0.75
|
6
|
4491.0
|
same-strand
|
Ribosomal protein S2
|
3
|
PF07733.14
|
1.0
|
8
|
32.5
|
same-strand
|
Bacterial DNA polymerase III alpha NTPase domain
|
4
|
PF17657.3
|
1.0
|
8
|
32.5
|
same-strand
|
Bacterial DNA polymerase III alpha subunit finger domain
|
5
|
PF02811.21
|
1.0
|
8
|
32.5
|
same-strand
|
PHP domain
|
6
|
PF14579.8
|
1.0
|
8
|
32.5
|
same-strand
|
Helix-hairpin-helix motif
|
7
|
PF01336.27
|
1.0
|
8
|
32.5
|
same-strand
|
OB-fold nucleic acid binding domain
|
8
|
PF00005.29
|
0.88
|
7
|
1125
|
same-strand
|
ABC transporter
|
9
|
PF12704.9
|
0.88
|
7
|
1804
|
same-strand
|
MacB-like periplasmic core domain
|
10
|
PF02687.23
|
0.88
|
7
|
1804
|
same-strand
|
FtsX-like permease family
|
11
|
PF00587.27
|
0.62
|
5
|
3084
|
same-strand
|
tRNA synthetase class II core domain (G, H, P, S and T)
|
12
|
PF03129.22
|
0.62
|
5
|
3084
|
same-strand
|
Anticodon binding domain
|
13
|
PF07330.14
|
0.62
|
5
|
4717
|
same-strand
|
Protein of unknown function (DUF1467)
|
++ More..