Result : EXP03054
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP03054 |
| NCBI Accession ID | |
| Organism | Clostridium,Blautia,Dorea,Roseburia,Lachnoclostridium,Ruminococcus,Coprococcus,Eubacterium,Butyrivibrio |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | ATGGGTAAGAAAAAGAAACAAAAGAAAAAGCCTATCGAATGGCGAGACCTGACAATCAACGCATTGATAGACTTAATCATAGGCATAATACTTATCATAATCGGTAAGTACATAGGTTAG |
| Sequence | MGKKKKQKKKPIEWRDLTINALIDLIIGIILIIIGKYIG |
| Source of smORF | Metagenomic Ribo-seq |
| Function | |
| Pubmed ID | 32601270 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 39 |
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| Conservation Analysis |
No. of Species: 2
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3185669 | 3185788 | + | NZ_CP027002.1 | [Ruminococcus] gnavus ATCC 29149 |
| 2 | 811615 | 811734 | + | NZ_CP022413.2 | Blautia hansenii DSM 20583 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP027002.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF05105.14 | 1.0 | 2 | 1657.0 | same-strand | Bacteriophage holin family |
| 2 | PF18013.3 | 1.0 | 2 | 169.0 | same-strand | Phage tail lysozyme |
| 3 | PF01510.27 | 1.0 | 2 | 169.0 | same-strand | N-acetylmuramoyl-L-alanine amidase |
| 4 | PF01381.24 | 1.0 | 2 | 178.0 | same-strand | Helix-turn-helix |
| 5 | PF12844.9 | 1.0 | 2 | 178.0 | same-strand | Helix-turn-helix domain |
| 6 | PF13560.8 | 1.0 | 2 | 178.0 | same-strand | Helix-turn-helix domain |
| 7 | PF13443.8 | 1.0 | 2 | 178.0 | same-strand | Cro/C1-type HTH DNA-binding domain |
| 8 | PF13936.8 | 1.0 | 2 | 1172.5 | same-strand | Helix-turn-helix domain |
++ More..