Result : B8E0J2
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S6 |
| NCBI Accession ID | CP001251.1 |
| Organism | Dictyoglomus turgidum (strain Z-1310 / DSM 6724) |
| Left | 1377816 |
| Right | 1378109 |
| Strand | - |
| Nucleotide Sequence | ATGCGTAAATACGAGATTATGTGTTTAATAAGTCCTGAGTTATCCGAAGAAGATTTCAAAACACTTTATGAGGGTATCCAACAAGATATTCAAAATTTGGGTGGCGAAGTACAAAATGTAGACGTATGGGGTAAAAGAACCCTTGCGTATCCTGTTAAAAAATTTACCGAGGGTTATTATGTGGTTATGAACTTTTTGTTTCCTCAGACTCAGCTTCCAGAATTTGAGCGGAGATTAAAATTAAGAGAAAAACTCTTGCGCTATATGATTACTCTCTTGGAGAAAGAAGAGTAA |
| Sequence | MRKYEIMCLISPELSEEDFKTLYEGIQQDIQNLGGEVQNVDVWGKRTLAYPVKKFTEGYYVVMNFLFPQTQLPEFERRLKLREKLLRYMITLLEKEE |
| Source of smORF | Swiss-Prot |
| Function | Binds together with S18 to 16S ribosomal RNA. {ECO:0000255|HAMAP-Rule:MF_00360}. |
| Pubmed ID | 28066333 |
| Domain | CDD:412366 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | B8E0J2 |
| ORF Length (Amino Acid) | 97 |
++ More..
| Conservation Analysis |
No. of Species: 7
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1377816 | 1378109 | - | NC_011661.1 | Dictyoglomus turgidum DSM 6724 |
| 2 | 1197487 | 1197780 | - | NC_011297.1 | Dictyoglomus thermophilum H-6-12 |
| 3 | 1393921 | 1394202 | - | NC_016148.1 | Thermovirga lienii DSM 17291 |
| 4 | 2287703 | 2287990 | - | NC_014209.1 | Thermoanaerobacter mathranii subsp. mathranii str. A3 |
| 5 | 2431379 | 2431666 | - | NC_013921.1 | Thermoanaerobacter italicus Ab9 |
| 6 | 2378619 | 2378906 | - | NZ_CP009170.1 | Thermoanaerobacter kivui |
| 7 | 2765919 | 2766206 | - | NC_015958.1 | Thermoanaerobacter wiegelii Rt8.B1 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_011661.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF09991.11 | 1.0 | 7 | 1158 | same-strand | Predicted membrane protein (DUF2232) |
| 2 | PF01084.22 | 1.0 | 7 | 499 | same-strand | Ribosomal protein S18 |
| 3 | PF00436.27 | 1.0 | 7 | 31 | same-strand | Single-strand binding protein family |
++ More..