* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR699011.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF07719.19
|
1.0
|
3
|
37
|
same-strand
|
Tetratricopeptide repeat
|
2
|
PF13432.8
|
0.67
|
2
|
38.0
|
same-strand
|
Tetratricopeptide repeat
|
3
|
PF01740.23
|
1.0
|
3
|
1581
|
same-strand
|
STAS domain
|
4
|
PF13466.8
|
1.0
|
3
|
1581
|
same-strand
|
STAS domain
|
5
|
PF13581.8
|
1.0
|
3
|
1929
|
same-strand
|
Histidine kinase-like ATPase domain
|
6
|
PF02518.28
|
1.0
|
3
|
1929
|
same-strand
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
|
7
|
PF04542.16
|
1.0
|
3
|
2373
|
same-strand
|
Sigma-70 region 2
|
8
|
PF04545.18
|
1.0
|
3
|
2373
|
same-strand
|
Sigma-70, region 4
|
++ More..