Result : EXP02990
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP02990 |
| NCBI Accession ID | |
| Organism | Roseburia,Eubacterium,Clostridium |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | ATGATTAAAGGATACACTGTACCCAACGGCTATATGGGATGGCTGAAAAGCGAAAGTAGATATCAGTTATTCGCAACGGAAACTGATTATCTTGAATATGTATTATTAAAGGAGGATGCAGCATGA |
| Sequence | MIKGYTVPNGYMGWLKSESRYQLFATETDYLEYVLLKEDAA |
| Source of smORF | Metagenomic Ribo-seq |
| Function | |
| Pubmed ID | 32601270 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 41 |
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| Conservation Analysis |
No. of Species: 2
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1924349 | 1924453 | + | NZ_CP036170.1 | [Clostridium] scindens ATCC 35704 |
| 2 | 1615130 | 1615231 | + | NZ_LT990039.1 | Massilistercora timonensis |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP036170.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00005.29 | 1.0 | 2 | 5255 | same-strand | ABC transporter |
| 2 | PF13280.8 | 1.0 | 2 | 110.0 | same-strand | WYL domain |
| 3 | PF00528.24 | 1.0 | 2 | 2478 | same-strand | Binding-protein-dependent transport system inner membrane component |
++ More..