Result : B7VL66
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | YcgL domain-containing protein VS_0884 |
| NCBI Accession ID | FM954972.2 |
| Organism | Vibrio atlanticus (strain LGP32) (Vibrio splendidus (strain Mel32)) |
| Left | 908428 |
| Right | 908718 |
| Strand | + |
| Nucleotide Sequence | ATGCTGTGTTCTATATATAAAAGTTCAAAGAAAGAAGGAACATACCTTTATATCCCTAAGAAGGATGATTTCTCACAAGTTCCTGACGCATTGATGCAAATGTTTGGTAAACCTAGTTTTGTAATGGTAATTAAAATGGATGGCCGTAAACTGGCGCAAGTGAACATCGATAAAGTGAGAGAATCACTGAACACCGATGGTTTCTTTTTGCAGGTTCCGCCACCACCGGTTAATGAACTTGAACTTCATAAAGAGCGTAAAGCTCAGCAAAACGTTCAAGACGAAGAGTGA |
| Sequence | MLCSIYKSSKKEGTYLYIPKKDDFSQVPDALMQMFGKPSFVMVIKMDGRKLAQVNIDKVRESLNTDGFFLQVPPPPVNELELHKERKAQQNVQDEE |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl22628. Profile Description: YcgL domain. This family of proteins formerly called DUF709 includes the E. coli gene ycgL. homologs of YcgL are found in gammaproteobacteria. The structure of this protein shows a novel alpha/beta/alpha sandwich structure. |
| Pubmed ID | |
| Domain | CDD:419850 |
| Functional Category | Others |
| Uniprot ID | B7VL66 |
| ORF Length (Amino Acid) | 96 |
++ More..
| Conservation Analysis |
No. of Species: 142
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 908428 | 908718 | + | NC_011753.2 | Vibrio atlanticus |
| 2 | 923140 | 923430 | + | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 3 | 504180 | 504470 | - | NZ_CP065150.1 | Vibrio kanaloae |
| 4 | 1042132 | 1042413 | + | NZ_CP044069.1 | Vibrio vulnificus |
| 5 | 2747621 | 2747902 | - | NC_013456.1 | Vibrio antiquarius |
| 6 | 2354712 | 2354996 | - | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 7 | 2011123 | 2011407 | - | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 8 | 887404 | 887679 | + | NZ_AP018689.1 | Vibrio aphrogenes |
| 9 | 870254 | 870535 | + | NZ_CP030788.1 | Vibrio campbellii |
| 10 | 1114118 | 1114399 | + | NZ_CP009467.1 | Vibrio harveyi |
| 11 | 915447 | 915728 | - | NZ_CP019959.1 | Vibrio owensii |
| 12 | 1323665 | 1323946 | - | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 13 | 1636899 | 1637177 | - | NZ_CP035688.1 | Vibrio metoecus |
| 14 | 2210904 | 2211188 | - | NZ_CP018312.1 | Vibrio rotiferianus |
| 15 | 2066093 | 2066374 | - | NZ_CP016414.1 | Vibrio scophthalmi |
| 16 | 1966017 | 1966295 | - | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 17 | 1500041 | 1500319 | + | NZ_CP040990.1 | Vibrio furnissii |
| 18 | 2309690 | 2309977 | - | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 19 | 1743351 | 1743629 | - | NZ_CP014035.2 | Vibrio fluvialis |
| 20 | 2167050 | 2167325 | - | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 21 | 1073754 | 1074035 | + | NZ_CP045350.1 | Vibrio aquimaris |
| 22 | 1822543 | 1822815 | - | NZ_AP018685.1 | Vibrio rumoiensis |
| 23 | 2389418 | 2389699 | - | NZ_AP014635.1 | Vibrio tritonius |
| 24 | 1797677 | 1797958 | - | NZ_CP022741.1 | Vibrio qinghaiensis |
| 25 | 2783494 | 2783784 | + | NZ_CP046793.1 | Vibrio metschnikovii |
| 26 | 1950178 | 1950459 | - | NZ_AP019657.1 | Vibrio ponticus |
| 27 | 1766184 | 1766474 | - | NZ_CP033078.1 | Vibrio zhugei |
| 28 | 1341711 | 1341992 | + | NZ_CP046268.1 | Vibrio spartinae |
| 29 | 1159542 | 1159823 | + | NC_011312.1 | Aliivibrio salmonicida LFI1238 |
| 30 | 1945146 | 1945421 | - | NZ_CP047475.1 | Vibrio astriarenae |
| 31 | 1916956 | 1917228 | - | NZ_CP065534.1 | Lonsdalea populi |
| 32 | 3154477 | 3154749 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 33 | 2427603 | 2427881 | - | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 34 | 1346654 | 1346938 | + | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 35 | 4037419 | 4037694 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 36 | 2514805 | 2515074 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 37 | 3728056 | 3728325 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 38 | 1003011 | 1003301 | + | NZ_CP071325.1 | Photobacterium ganghwense |
| 39 | 4233522 | 4233797 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 40 | 4231107 | 4231376 | - | NZ_CP065640.1 | Serratia rubidaea |
| 41 | 2957840 | 2958115 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 42 | 1000682 | 1000957 | + | NZ_CP040021.1 | Salinivibrio kushneri |
| 43 | 3025733 | 3026005 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 44 | 2249344 | 2249619 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 45 | 5078875 | 5079147 | - | NZ_CP011254.1 | Serratia fonticola |
| 46 | 3029835 | 3030107 | - | NZ_LR134494.1 | Serratia quinivorans |
| 47 | 2028740 | 2029012 | - | NZ_CP032487.1 | Yersinia hibernica |
| 48 | 815073 | 815366 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 49 | 147153 | 147428 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 50 | 4422546 | 4422839 | - | NZ_CP053416.1 | Salmonella bongori |
| 51 | 3690593 | 3690865 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 52 | 2546936 | 2547208 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 53 | 217852 | 218124 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 54 | 2221173 | 2221445 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 55 | 4022626 | 4022898 | + | NZ_CP007230.1 | Yersinia similis |
| 56 | 1778659 | 1778895 | - | NZ_CP029206.1 | Actinobacillus porcitonsillarum |
| 57 | 2130133 | 2130411 | + | NZ_CP050508.1 | Raoultella terrigena |
| 58 | 2139970 | 2140242 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 59 | 2437328 | 2437585 | - | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 60 | 2357226 | 2357504 | - | NC_008700.1 | Shewanella amazonensis SB2B |
| 61 | 4716405 | 4716677 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 62 | 3034178 | 3034450 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 63 | 1217572 | 1217865 | + | NZ_AP014857.1 | Escherichia albertii |
| 64 | 479096 | 479368 | + | NZ_CP009787.1 | Yersinia rohdei |
| 65 | 1945760 | 1946035 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 66 | 2655628 | 2655903 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 67 | 2282225 | 2282497 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 68 | 3563313 | 3563588 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 69 | 1862497 | 1862775 | - | NZ_CP020373.1 | Shewanella khirikhana |
| 70 | 1033321 | 1033599 | - | NZ_CP041783.1 | Shewanella donghaensis |
| 71 | 2234980 | 2235252 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 72 | 1608462 | 1608737 | - | NZ_CP028271.1 | Mixta intestinalis |
| 73 | 1658421 | 1658696 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 74 | 1911662 | 1911955 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 75 | 2499704 | 2499976 | - | NZ_CP043727.1 | Yersinia canariae |
| 76 | 608423 | 608695 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 77 | 3444926 | 3445198 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 78 | 2149866 | 2150141 | - | NZ_CP023567.1 | Erwinia pyrifoliae |
| 79 | 716711 | 716986 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 80 | 2482741 | 2483016 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 81 | 1227714 | 1228007 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 82 | 2828551 | 2828826 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 83 | 1669338 | 1669631 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 84 | 1494823 | 1495098 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 85 | 285985 | 286260 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 86 | 2287325 | 2287606 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 87 | 2147134 | 2147412 | + | NZ_LR134376.1 | Aeromonas encheleia |
| 88 | 2279841 | 2280119 | - | NZ_CP069213.1 | Shewanella litorisediminis |
| 89 | 2985611 | 2985886 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 90 | 4219680 | 4219970 | + | NZ_CP034759.1 | Litorilituus sediminis |
| 91 | 2067157 | 2067429 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 92 | 248496 | 248774 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 93 | 2472824 | 2473099 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 94 | 2564879 | 2565154 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 95 | 1143728 | 1144021 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 96 | 926767 | 927042 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 97 | 2036940 | 2037221 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 98 | 2465729 | 2466001 | - | NZ_CP025799.1 | Dickeya zeae |
| 99 | 1923025 | 1923306 | + | NC_014541.1 | Ferrimonas balearica DSM 9799 |
| 100 | 1903503 | 1903796 | + | NZ_LR134340.1 | Escherichia marmotae |
| 101 | 2283211 | 2283489 | + | NZ_AP022188.1 | Aeromonas media |
| 102 | 2175683 | 2175955 | + | NZ_CP071320.1 | Serratia ureilytica |
| 103 | 2952124 | 2952396 | - | NZ_LT906479.1 | Serratia ficaria |
| 104 | 1645052 | 1645333 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 105 | 1862121 | 1862378 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 106 | 1457747 | 1458025 | + | NZ_CP044399.1 | Moritella marina ATCC 15381 |
| 107 | 1893714 | 1894001 | + | NC_007954.1 | Shewanella denitrificans OS217 |
| 108 | 1211416 | 1211709 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 109 | 255880 | 256158 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 110 | 2377160 | 2377441 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 111 | 766373 | 766654 | + | NZ_CP031962.1 | Pseudoalteromonas tunicata |
| 112 | 2465577 | 2465867 | - | NZ_CP072844.1 | Psychrosphaera aestuarii |
| 113 | 1925281 | 1925562 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 114 | 2482276 | 2482569 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 115 | 2099168 | 2099440 | + | NZ_CP046293.1 | Yersinia intermedia |
| 116 | 2923845 | 2924117 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 117 | 2703782 | 2704051 | + | NZ_CP029736.1 | Providencia rettgeri |
| 118 | 1508358 | 1508630 | - | NZ_CP067057.1 | Rahnella aceris |
| 119 | 834278 | 834517 | - | NZ_CP030753.1 | Actinobacillus pleuropneumoniae |
| 120 | 66866 | 67138 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 121 | 2189954 | 2190232 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 122 | 5178406 | 5178687 | - | NZ_CP026047.1 | Raoultella planticola |
| 123 | 2089605 | 2089886 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 124 | 1509005 | 1509244 | - | NC_021883.1 | Mannheimia haemolytica USMARC_2286 |
| 125 | 672337 | 672612 | - | NZ_CP049115.1 | Pantoea stewartii |
| 126 | 1962364 | 1962642 | + | NZ_CP037951.1 | Parashewanella tropica |
| 127 | 2015095 | 2015376 | + | NZ_CP041247.1 | Raoultella electrica |
| 128 | 2350063 | 2350320 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 129 | 3204725 | 3204994 | - | NZ_CP023536.1 | Providencia alcalifaciens |
| 130 | 728096 | 728335 | + | NZ_CP007715.1 | Actinobacillus equuli subsp. equuli |
| 131 | 1615220 | 1615510 | - | NZ_CP051180.1 | Ferrimonas lipolytica |
| 132 | 2385590 | 2385883 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 133 | 187583 | 187861 | + | NC_011852.1 | Glaesserella parasuis SH0165 |
| 134 | 1369171 | 1369440 | + | NZ_CP031123.2 | Providencia huaxiensis |
| 135 | 2774665 | 2774937 | - | NC_012962.1 | Photorhabdus asymbiotica |
| 136 | 2070481 | 2070759 | + | NZ_CP022358.1 | Shewanella bicestrii |
| 137 | 2222363 | 2222635 | - | NZ_CP015581.1 | Tatumella citrea |
| 138 | 2033079 | 2033360 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 139 | 2272076 | 2272354 | + | NC_016901.1 | Shewanella baltica OS678 |
| 140 | 3741337 | 3741648 | + | NZ_CP020465.1 | Cognaticolwellia beringensis |
| 141 | 1265395 | 1265670 | - | NZ_LR134167.1 | Avibacterium volantium |
| 142 | 45841 | 46080 | + | NZ_CP015425.1 | [Haemophilus] ducreyi |
| 143 | 923500 | 923790 | + | NZ_CP006954.1 | Bibersteinia trehalosi USDA-ARS-USMARC-188 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP065534.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03776.16 | 0.91 | 129 | 1673 | opposite-strand | Septum formation topological specificity factor MinE |
| 2 | PF13614.8 | 0.91 | 129 | 857.0 | opposite-strand | AAA domain |
| 3 | PF01656.25 | 0.91 | 129 | 857.0 | opposite-strand | CobQ/CobB/MinD/ParA nucleotide binding domain |
| 4 | PF03775.18 | 0.91 | 129 | 137.0 | opposite-strand | Septum formation inhibitor MinC, C-terminal domain |
| 5 | PF05209.15 | 0.91 | 129 | 137.0 | opposite-strand | Septum formation inhibitor MinC, N-terminal domain |
| 6 | PF00501.30 | 0.67 | 95 | 3271 | same-strand | AMP-binding enzyme |
| 7 | PF13193.8 | 0.68 | 96 | 3271.5 | same-strand | AMP-binding enzyme C-terminal domain |
| 8 | PF01612.22 | 0.78 | 111 | 2054 | same-strand | 3'-5' exonuclease |
| 9 | PF00570.25 | 0.78 | 111 | 2054 | same-strand | HRDC domain |
| 10 | PF03692.17 | 0.69 | 98 | 1091.0 | same-strand | Putative zinc- or iron-chelating domain |
++ More..