Protein Information |
Information Type | Description |
---|---|
Protein name | EXP02925 |
NCBI Accession ID | |
Organism | |
Left | |
Right | |
Strand | |
Nucleotide Sequence | ATGATCTGGGAAGGTCAGTCGAAGAAGGTAATAACCCTGTATGCGAAAGCCAGAAATTTGGGGAAGGATCCGGAGTACCACGAAGCACGTGAAATTTCGTGGGAAGCAGGGGGGACCACCCTCCAAGGCTAA |
Sequence | MIWEGQSKKVITLYAKARNLGKDPEYHEAREISWEAGGTTLQG |
Source of smORF | Metagenomic Ribo-seq |
Function | |
Pubmed ID | 32601270 |
Domain | |
Functional Category | Function not yet assigned |
Uniprot ID | |
ORF Length (Amino Acid) | 43 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 2020973 | 2021080 | - | NC_007503.1 | Carboxydothermus hydrogenoformans Z-2901 |
2 | 1896488 | 1896595 | - | NC_007503.1 | Carboxydothermus hydrogenoformans Z-2901 |
3 | 1395461 | 1395568 | - | NC_007503.1 | Carboxydothermus hydrogenoformans Z-2901 |
4 | 2111392 | 2111499 | - | NC_007503.1 | Carboxydothermus hydrogenoformans Z-2901 |
5 | 3874878 | 3875006 | - | NZ_CP009687.1 | Clostridium aceticum |
6 | 3727429 | 3727557 | - | NZ_CP009687.1 | Clostridium aceticum |
7 | 1163789 | 1163917 | + | NZ_CP009687.1 | Clostridium aceticum |
8 | 41490 | 41618 | + | NZ_CP020559.1 | Clostridium formicaceticum |
9 | 4242289 | 4242417 | - | NZ_CP020559.1 | Clostridium formicaceticum |
10 | 4111840 | 4111968 | - | NZ_CP020559.1 | Clostridium formicaceticum |
11 | 4084644 | 4084772 | - | NZ_CP020559.1 | Clostridium formicaceticum |
12 | 1392705 | 1392833 | + | NZ_CP020559.1 | Clostridium formicaceticum |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF07724.16 | 0.67 | 2 | 4662.5 | same-strand | AAA domain (Cdc48 subfamily) |
2 | PF00004.31 | 0.67 | 2 | 5288 | same-strand | ATPase family associated with various cellular activities (AAA) |
3 | PF07728.16 | 0.67 | 2 | 4662.5 | same-strand | AAA domain (dynein-related subfamily) |
4 | PF17975.3 | 0.67 | 2 | 3937.5 | same-strand | Ribonucleotide reductase alpha domain |
5 | PF03477.18 | 0.67 | 2 | 3937.5 | same-strand | ATP cone domain |
6 | PF14595.8 | 0.67 | 2 | 3138.5 | same-strand | Thioredoxin |
7 | PF00152.22 | 0.67 | 2 | 2572.5 | same-strand | tRNA synthetases class II (D, K and N) |
8 | PF01336.27 | 0.67 | 2 | 2572.5 | same-strand | OB-fold nucleic acid binding domain |
9 | PF03449.17 | 0.67 | 2 | 4123.0 | same-strand | Transcription elongation factor, N-terminal |
10 | PF01272.21 | 0.67 | 2 | 4123.0 | same-strand | Transcription elongation factor, GreA/GreB, C-term |
11 | PF04972.19 | 0.67 | 2 | 7600.0 | opposite-strand | BON domain |
12 | PF00764.21 | 0.67 | 2 | 6225.0 | opposite-strand | Arginosuccinate synthase |
13 | PF01488.22 | 0.67 | 2 | 5107.0 | same-strand | Shikimate / quinate 5-dehydrogenase |
14 | PF00202.23 | 0.67 | 2 | 3690.5 | same-strand | Aminotransferase class-III |
15 | PF07613.13 | 0.67 | 2 | 3081.0 | same-strand | Protein of unknown function (DUF1576) |
16 | PF00885.21 | 0.67 | 2 | 4798.0 | same-strand | 6,7-dimethyl-8-ribityllumazine synthase |