Result : EXP02915
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP02915 |
| NCBI Accession ID | |
| Organism | Roseburia,Bacteroides,Butyrivibrio,Dorea,Eubacterium,Blautia |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | ATGGAGCAGGAACTTACCGTAGAAGAACTGATTGCTCTTGTAAACAGCCAGAAAGGTGACTTTATTATCCGTATTGAGTTTGGAGAGGAGGCGGATTCCTGTGACAGAGAAGAACGACTTCAAACTTGA |
| Sequence | MEQELTVEELIALVNSQKGDFIIRIEFGEEADSCDREERLQT |
| Source of smORF | Metagenomic Ribo-seq |
| Function | |
| Pubmed ID | 32601270 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 42 |
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| Conservation Analysis |
No. of Species: 2
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2699589 | 2699717 | - | NZ_LR027880.1 | Roseburia intestinalis L1-82 |
| 2 | 3516633 | 3516761 | - | NZ_LR699011.1 | Roseburia hominis |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR027880.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03432.16 | 1.0 | 2 | 2724.0 | same-strand | Relaxase/Mobilisation nuclease domain |
| 2 | PF05713.13 | 1.0 | 2 | 2405.0 | same-strand | Bacterial mobilisation protein (MobC) |
| 3 | PF13154.8 | 1.0 | 2 | 516.0 | same-strand | Protein of unknown function (DUF3991) |
| 4 | PF13155.8 | 1.0 | 2 | 516.0 | same-strand | Toprim-like |
| 5 | PF04002.17 | 1.0 | 2 | -28.0 | same-strand | RadC-like JAB domain |
| 6 | PF18941.2 | 1.0 | 2 | 10.0 | same-strand | Family of unknown function (DUF5688) |
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