Result : B7LSK4
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Protein YcgL |
| NCBI Accession ID | CU928158.2 |
| Organism | Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) |
| Left | 1827874 |
| Right | 1828167 |
| Strand | - |
| Nucleotide Sequence | ATGCTTTGTGTGATCTATAGAAGTAGTAAACGTGATCAGACCTATTTATATGTCGAAAAAAAAGACGATTTTTCACGTGTTCCCGAAGAGCTGATGCAGGGATTCGGTAAACCACAACTGGCGATGATTCTGCCGTTGGACGGGCGTAAAAAATTAGTCAATGCTGATATTGAAAAAGTGAAAAAGGCGTTAACCGAGCAGGGATATTATTTGCAGTTACCGCCACCACCAGAAGATTTACTGAAACAGCATCTTTCTTTGACTGGGCATATCCGTACAGAGAGTGAGCAATAA |
| Sequence | MLCVIYRSSKRDQTYLYVEKKDDFSRVPEELMQGFGKPQLAMILPLDGRKKLVNADIEKVKKALTEQGYYLQLPPPPEDLLKQHLSLTGHIRTESEQ |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl22628. Profile Description: YcgL domain. This family of proteins formerly called DUF709 includes the E. coli gene ycgL. homologs of YcgL are found in gammaproteobacteria. The structure of this protein shows a novel alpha/beta/alpha sandwich structure. |
| Pubmed ID | 19165319 |
| Domain | CDD:419850 |
| Functional Category | Others |
| Uniprot ID | B7LSK4 |
| ORF Length (Amino Acid) | 97 |
++ More..
| Conservation Analysis |
No. of Species: 260
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 815073 | 815366 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 2 | 1217572 | 1217865 | + | NZ_AP014857.1 | Escherichia albertii |
| 3 | 1227714 | 1228007 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 4 | 1669338 | 1669631 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 5 | 1211416 | 1211709 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 6 | 2482276 | 2482569 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 7 | 1957351 | 1957644 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 8 | 1340068 | 1340361 | - | NZ_CP038469.1 | Citrobacter tructae |
| 9 | 1903503 | 1903796 | + | NZ_LR134340.1 | Escherichia marmotae |
| 10 | 1143728 | 1144021 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 11 | 4422546 | 4422839 | - | NZ_CP053416.1 | Salmonella bongori |
| 12 | 1911662 | 1911955 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 13 | 4552177 | 4552470 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 14 | 2862178 | 2862453 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 15 | 579263 | 579538 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 16 | 2704388 | 2704663 | - | NC_015968.1 | Enterobacter soli |
| 17 | 716711 | 716986 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 18 | 2752038 | 2752313 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 19 | 1993598 | 1993873 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 20 | 535141 | 535434 | - | NZ_CP033744.1 | Citrobacter freundii |
| 21 | 2773972 | 2774247 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 22 | 4516800 | 4517075 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 23 | 1925281 | 1925562 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 24 | 1824447 | 1824722 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 25 | 2985611 | 2985886 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 26 | 4115013 | 4115306 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 27 | 2834651 | 2834944 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 28 | 2655628 | 2655903 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 29 | 2772935 | 2773210 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 30 | 1521106 | 1521381 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 31 | 1982382 | 1982663 | + | NZ_CP054254.1 | Klebsiella variicola |
| 32 | 1905067 | 1905348 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 33 | 2957840 | 2958115 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 34 | 147153 | 147428 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 35 | 3312071 | 3312352 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 36 | 2249344 | 2249619 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 37 | 2828551 | 2828826 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 38 | 1906767 | 1907042 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 39 | 2514805 | 2515074 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 40 | 3728056 | 3728325 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 41 | 1945760 | 1946035 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 42 | 285985 | 286260 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 43 | 3563313 | 3563588 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 44 | 4233522 | 4233797 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 45 | 2377160 | 2377441 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 46 | 926767 | 927042 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 47 | 4037419 | 4037694 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 48 | 2036940 | 2037221 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 49 | 2130133 | 2130411 | + | NZ_CP050508.1 | Raoultella terrigena |
| 50 | 2221173 | 2221445 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 51 | 1494823 | 1495098 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 52 | 2482741 | 2483016 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 53 | 2564879 | 2565154 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 54 | 2287325 | 2287606 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 55 | 2755542 | 2755808 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 56 | 1988904 | 1989179 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 57 | 1658421 | 1658696 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 58 | 1852912 | 1853187 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 59 | 2952124 | 2952396 | - | NZ_LT906479.1 | Serratia ficaria |
| 60 | 2407116 | 2407391 | - | NZ_CP061511.1 | Mixta calida |
| 61 | 2526903 | 2527178 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 62 | 3029835 | 3030107 | - | NZ_LR134494.1 | Serratia quinivorans |
| 63 | 3025733 | 3026005 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 64 | 3464329 | 3464604 | + | NZ_CP019706.1 | Pantoea alhagi |
| 65 | 2149866 | 2150141 | - | NZ_CP023567.1 | Erwinia pyrifoliae |
| 66 | 2599694 | 2599951 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 67 | 1862121 | 1862378 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 68 | 2506056 | 2506313 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 69 | 2059731 | 2060006 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 70 | 2282883 | 2283140 | + | NZ_CP038498.1 | Pectobacterium punjabense |
| 71 | 3874715 | 3874972 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 72 | 5178406 | 5178687 | - | NZ_CP026047.1 | Raoultella planticola |
| 73 | 2089605 | 2089886 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 74 | 1608462 | 1608737 | - | NZ_CP028271.1 | Mixta intestinalis |
| 75 | 1928263 | 1928538 | + | NZ_CP023525.1 | Cedecea neteri |
| 76 | 1746967 | 1747242 | + | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 77 | 2028740 | 2029012 | - | NZ_CP032487.1 | Yersinia hibernica |
| 78 | 3034178 | 3034450 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 79 | 1850217 | 1850492 | + | NZ_LR134201.1 | Cedecea lapagei |
| 80 | 2437328 | 2437585 | - | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 81 | 2530588 | 2530863 | - | NZ_CP026377.1 | Mixta gaviniae |
| 82 | 1092330 | 1092587 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 83 | 2350063 | 2350320 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 84 | 2015095 | 2015376 | + | NZ_CP041247.1 | Raoultella electrica |
| 85 | 2402399 | 2402656 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 86 | 4072265 | 4072522 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 87 | 4716405 | 4716677 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 88 | 2923845 | 2924117 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 89 | 2037235 | 2037519 | + | NZ_CP050150.1 | Hafnia alvei |
| 90 | 5078875 | 5079147 | - | NZ_CP011254.1 | Serratia fonticola |
| 91 | 1680422 | 1680679 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 92 | 1853594 | 1853869 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 93 | 1836029 | 1836304 | + | NZ_CP038853.1 | Pantoea vagans |
| 94 | 4022626 | 4022898 | + | NZ_CP007230.1 | Yersinia similis |
| 95 | 248496 | 248774 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 96 | 2175683 | 2175955 | + | NZ_CP071320.1 | Serratia ureilytica |
| 97 | 2472824 | 2473099 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 98 | 2139970 | 2140242 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 99 | 2546936 | 2547208 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 100 | 217852 | 218124 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 101 | 4231107 | 4231376 | - | NZ_CP065640.1 | Serratia rubidaea |
| 102 | 2221107 | 2221382 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 103 | 3444926 | 3445198 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 104 | 2234980 | 2235252 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 105 | 1991152 | 1991409 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 106 | 2499704 | 2499976 | - | NZ_CP043727.1 | Yersinia canariae |
| 107 | 2189954 | 2190232 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 108 | 479096 | 479368 | + | NZ_CP009787.1 | Yersinia rohdei |
| 109 | 2282225 | 2282497 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 110 | 2414755 | 2415027 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 111 | 1916956 | 1917228 | - | NZ_CP065534.1 | Lonsdalea populi |
| 112 | 2135634 | 2135909 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 113 | 2067157 | 2067429 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 114 | 3154477 | 3154749 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 115 | 3690593 | 3690865 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 116 | 1645052 | 1645333 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 117 | 255880 | 256158 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 118 | 608423 | 608695 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 119 | 2158139 | 2158414 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 120 | 2465729 | 2466001 | - | NZ_CP025799.1 | Dickeya zeae |
| 121 | 2099168 | 2099440 | + | NZ_CP046293.1 | Yersinia intermedia |
| 122 | 1231862 | 1232149 | + | NC_010554.1 | Proteus mirabilis HI4320 |
| 123 | 672337 | 672612 | - | NZ_CP049115.1 | Pantoea stewartii |
| 124 | 3489532 | 3489813 | + | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 125 | 1508358 | 1508630 | - | NZ_CP067057.1 | Rahnella aceris |
| 126 | 1584968 | 1585249 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 127 | 2385590 | 2385883 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 128 | 66866 | 67138 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 129 | 2362264 | 2362533 | - | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 130 | 2774665 | 2774937 | - | NC_012962.1 | Photorhabdus asymbiotica |
| 131 | 1957838 | 1958125 | - | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 132 | 3514339 | 3514626 | - | NZ_CP026364.1 | Proteus hauseri |
| 133 | 4647732 | 4648004 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 134 | 2148907 | 2149185 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 135 | 2389003 | 2389272 | - | NZ_LS483422.1 | Providencia heimbachae |
| 136 | 957651 | 957929 | + | NZ_CP016176.1 | Xenorhabdus hominickii |
| 137 | 1760556 | 1760837 | - | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 138 | 2033079 | 2033360 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 139 | 3204725 | 3204994 | - | NZ_CP023536.1 | Providencia alcalifaciens |
| 140 | 2703782 | 2704051 | + | NZ_CP029736.1 | Providencia rettgeri |
| 141 | 2447927 | 2448199 | - | NZ_CP048796.1 | Providencia vermicola |
| 142 | 1369171 | 1369440 | + | NZ_CP031123.2 | Providencia huaxiensis |
| 143 | 2522856 | 2523128 | + | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 144 | 2222363 | 2222635 | - | NZ_CP015581.1 | Tatumella citrea |
| 145 | 1851508 | 1851789 | + | NZ_LR134531.1 | Pragia fontium |
| 146 | 1944934 | 1945203 | - | NZ_CP029185.2 | Limnobaculum parvum |
| 147 | 2018769 | 2019050 | - | NZ_CP012621.1 | Zobellella denitrificans |
| 148 | 2003076 | 2003345 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 149 | 2080278 | 2080535 | - | NZ_LS483470.1 | Leminorella richardii |
| 150 | 1923025 | 1923306 | + | NC_014541.1 | Ferrimonas balearica DSM 9799 |
| 151 | 2453458 | 2453739 | - | NZ_CP017689.1 | Thalassotalea crassostreae |
| 152 | 3655970 | 3656263 | - | NC_003910.7 | Colwellia psychrerythraea 34H |
| 153 | 1033321 | 1033599 | - | NZ_CP041783.1 | Shewanella donghaensis |
| 154 | 4219680 | 4219970 | + | NZ_CP034759.1 | Litorilituus sediminis |
| 155 | 2427603 | 2427881 | - | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 156 | 1003011 | 1003301 | + | NZ_CP071325.1 | Photobacterium ganghwense |
| 157 | 2389418 | 2389699 | - | NZ_AP014635.1 | Vibrio tritonius |
| 158 | 745280 | 745558 | + | NZ_CP044060.1 | Aeromonas veronii |
| 159 | 2357226 | 2357504 | - | NC_008700.1 | Shewanella amazonensis SB2B |
| 160 | 914424 | 914702 | + | NZ_CP065745.1 | Aeromonas allosaccharophila |
| 161 | 1042132 | 1042413 | + | NZ_CP044069.1 | Vibrio vulnificus |
| 162 | 2279841 | 2280119 | - | NZ_CP069213.1 | Shewanella litorisediminis |
| 163 | 2543261 | 2543542 | - | NC_009092.1 | Shewanella loihica PV-4 |
| 164 | 1615220 | 1615510 | - | NZ_CP051180.1 | Ferrimonas lipolytica |
| 165 | 1902782 | 1903063 | + | NZ_CP022272.1 | Shewanella marisflavi |
| 166 | 1862497 | 1862775 | - | NZ_CP020373.1 | Shewanella khirikhana |
| 167 | 2747621 | 2747902 | - | NC_013456.1 | Vibrio antiquarius |
| 168 | 716039 | 716320 | + | NZ_CP021376.1 | Oceanisphaera avium |
| 169 | 1950178 | 1950459 | - | NZ_AP019657.1 | Vibrio ponticus |
| 170 | 1893714 | 1894001 | + | NC_007954.1 | Shewanella denitrificans OS217 |
| 171 | 1346654 | 1346938 | + | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 172 | 504180 | 504470 | - | NZ_CP065150.1 | Vibrio kanaloae |
| 173 | 48829 | 49110 | - | NZ_CP021377.1 | Oceanisphaera profunda |
| 174 | 1341711 | 1341992 | + | NZ_CP046268.1 | Vibrio spartinae |
| 175 | 2465577 | 2465867 | - | NZ_CP072844.1 | Psychrosphaera aestuarii |
| 176 | 766373 | 766654 | + | NZ_CP031962.1 | Pseudoalteromonas tunicata |
| 177 | 2354712 | 2354996 | - | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 178 | 2011123 | 2011407 | - | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 179 | 2066093 | 2066374 | - | NZ_CP016414.1 | Vibrio scophthalmi |
| 180 | 2283211 | 2283489 | + | NZ_AP022188.1 | Aeromonas media |
| 181 | 2147134 | 2147412 | + | NZ_LR134376.1 | Aeromonas encheleia |
| 182 | 887404 | 887679 | + | NZ_AP018689.1 | Vibrio aphrogenes |
| 183 | 1500041 | 1500319 | + | NZ_CP040990.1 | Vibrio furnissii |
| 184 | 2616501 | 2616782 | - | NZ_CP050851.1 | Aeromonas hydrophila |
| 185 | 1950485 | 1950763 | + | NZ_CP041036.1 | Shewanella polaris |
| 186 | 1159542 | 1159823 | + | NC_011312.1 | Aliivibrio salmonicida LFI1238 |
| 187 | 2194045 | 2194326 | + | NC_010334.1 | Shewanella halifaxensis HAW-EB4 |
| 188 | 2714234 | 2714512 | - | NZ_CP020472.1 | Shewanella japonica |
| 189 | 870254 | 870535 | + | NZ_CP030788.1 | Vibrio campbellii |
| 190 | 1114118 | 1114399 | + | NZ_CP009467.1 | Vibrio harveyi |
| 191 | 915447 | 915728 | - | NZ_CP019959.1 | Vibrio owensii |
| 192 | 1323665 | 1323946 | - | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 193 | 1127321 | 1127599 | + | NZ_CP051883.1 | Aeromonas salmonicida |
| 194 | 3741337 | 3741648 | + | NZ_CP020465.1 | Cognaticolwellia beringensis |
| 195 | 2309690 | 2309977 | - | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 196 | 1422667 | 1422945 | + | NZ_CP040449.1 | Aeromonas simiae |
| 197 | 1743351 | 1743629 | - | NZ_CP014035.2 | Vibrio fluvialis |
| 198 | 3267057 | 3267344 | + | NZ_CP041660.1 | Catenovulum sediminis |
| 199 | 1966017 | 1966295 | - | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 200 | 2210904 | 2211188 | - | NZ_CP018312.1 | Vibrio rotiferianus |
| 201 | 2987344 | 2987625 | - | NC_009901.1 | Shewanella pealeana ATCC 700345 |
| 202 | 2390125 | 2390406 | + | NC_011566.1 | Shewanella piezotolerans WP3 |
| 203 | 908428 | 908718 | + | NC_011753.2 | Vibrio atlanticus |
| 204 | 3029194 | 3029472 | - | NZ_CP034015.1 | Shewanella livingstonensis |
| 205 | 179956 | 180231 | - | NZ_CP014056.2 | Grimontia hollisae |
| 206 | 1636899 | 1637177 | - | NZ_CP035688.1 | Vibrio metoecus |
| 207 | 1797677 | 1797958 | - | NZ_CP022741.1 | Vibrio qinghaiensis |
| 208 | 2829129 | 2829410 | - | NC_014012.1 | Shewanella violacea DSS12 |
| 209 | 194763 | 195044 | + | NZ_CP032091.1 | Pseudoalteromonas donghaensis |
| 210 | 2045207 | 2045485 | + | NC_008345.1 | Shewanella frigidimarina NCIMB 400 |
| 211 | 2590237 | 2590518 | + | NC_010506.1 | Shewanella woodyi ATCC 51908 |
| 212 | 3063206 | 3063487 | - | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 213 | 304086 | 304367 | + | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 214 | 2462323 | 2462619 | - | NC_016041.1 | Glaciecola nitratireducens FR1064 |
| 215 | 880604 | 880882 | - | NZ_CP009889.1 | Pseudoalteromonas piratica |
| 216 | 1504440 | 1504691 | + | NZ_CP061280.1 | Mannheimia bovis |
| 217 | 1073754 | 1074035 | + | NZ_CP045350.1 | Vibrio aquimaris |
| 218 | 1945146 | 1945421 | - | NZ_CP047475.1 | Vibrio astriarenae |
| 219 | 573526 | 573807 | + | NC_007482.1 | Pseudoalteromonas translucida |
| 220 | 616823 | 617104 | + | NZ_CP011037.1 | Pseudoalteromonas nigrifaciens |
| 221 | 2070481 | 2070759 | + | NZ_CP022358.1 | Shewanella bicestrii |
| 222 | 784421 | 784699 | + | NZ_CP011040.1 | Pseudoalteromonas spongiae UST010723-006 |
| 223 | 696745 | 697035 | + | NZ_CP016604.1 | Otariodibacter oris |
| 224 | 661767 | 662048 | + | NZ_CP011031.1 | Pseudoalteromonas issachenkonii |
| 225 | 662047 | 662328 | + | NZ_CP011042.1 | Pseudoalteromonas tetraodonis |
| 226 | 1822543 | 1822815 | - | NZ_AP018685.1 | Vibrio rumoiensis |
| 227 | 1416112 | 1416393 | - | NZ_CP014782.1 | Shewanella psychrophila |
| 228 | 2729075 | 2729353 | + | NZ_CP037952.1 | Parashewanella spongiae |
| 229 | 728096 | 728335 | + | NZ_CP007715.1 | Actinobacillus equuli subsp. equuli |
| 230 | 2288391 | 2288678 | + | NZ_CP046378.1 | Shewanella algae |
| 231 | 1962364 | 1962642 | + | NZ_CP037951.1 | Parashewanella tropica |
| 232 | 2783494 | 2783784 | + | NZ_CP046793.1 | Vibrio metschnikovii |
| 233 | 2167050 | 2167325 | - | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 234 | 720040 | 720321 | + | NZ_CP011026.1 | Pseudoalteromonas arctica A 37-1-2 |
| 235 | 2272076 | 2272354 | + | NC_016901.1 | Shewanella baltica OS678 |
| 236 | 834278 | 834517 | - | NZ_CP030753.1 | Actinobacillus pleuropneumoniae |
| 237 | 1318811 | 1319050 | + | NZ_CP046531.1 | Mannheimia ovis |
| 238 | 1766184 | 1766474 | - | NZ_CP033078.1 | Vibrio zhugei |
| 239 | 1509005 | 1509244 | - | NC_021883.1 | Mannheimia haemolytica USMARC_2286 |
| 240 | 67331 | 67618 | - | NZ_CP027524.1 | Pseudoalteromonas carrageenovora |
| 241 | 1478578 | 1478817 | + | NZ_CP055305.1 | Mannheimia pernigra |
| 242 | 1348769 | 1349065 | - | NC_008709.1 | Psychromonas ingrahamii 37 |
| 243 | 1778659 | 1778895 | - | NZ_CP029206.1 | Actinobacillus porcitonsillarum |
| 244 | 1141731 | 1141970 | - | NZ_CP006944.1 | Mannheimia varigena USDA-ARS-USMARC-1312 |
| 245 | 704380 | 704619 | + | NZ_CP009159.1 | Actinobacillus suis ATCC 33415 |
| 246 | 652621 | 652884 | - | NZ_CP016180.1 | Pasteurella skyensis |
| 247 | 392499 | 392780 | - | NZ_CP072426.1 | Pseudoalteromonas viridis |
| 248 | 2692582 | 2692875 | - | NZ_CP008849.1 | Alteromonas australica |
| 249 | 716164 | 716451 | + | NZ_CP011029.1 | Pseudoalteromonas espejiana DSM 9414 |
| 250 | 574278 | 574565 | + | NZ_CP033066.1 | Pseudoalteromonas agarivorans |
| 251 | 984560 | 984841 | + | NZ_CP013188.1 | Pseudoalteromonas phenolica |
| 252 | 1708982 | 1709218 | + | NC_020888.1 | Thalassolituus oleivorans MIL-1 |
| 253 | 1031469 | 1031777 | + | NC_006300.1 | [Mannheimia] succiniciproducens MBEL55E |
| 254 | 686416 | 686667 | + | NZ_LT906448.1 | Pasteurella dagmatis |
| 255 | 1336539 | 1336838 | + | NZ_CP015029.1 | Frederiksenia canicola |
| 256 | 3991215 | 3991454 | + | NC_018868.3 | Simiduia agarivorans SA1 = DSM 21679 |
| 257 | 1101945 | 1102241 | + | NC_015554.1 | Alteromonas naphthalenivorans |
| 258 | 2994206 | 2994502 | - | NZ_CP014322.1 | Alteromonas addita |
| 259 | 952848 | 953084 | - | NZ_CP045302.1 | Azotobacter salinestris |
| 260 | 2810764 | 2811006 | - | NZ_CP011835.1 | Azotobacter chroococcum |
| 261 | 3373485 | 3373721 | - | NC_012560.1 | Azotobacter vinelandii DJ |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP053416.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03692.17 | 0.74 | 193 | 1102 | same-strand | Putative zinc- or iron-chelating domain |
| 2 | PF05209.15 | 0.89 | 231 | 137.0 | opposite-strand | Septum formation inhibitor MinC, N-terminal domain |
| 3 | PF03775.18 | 0.89 | 231 | 137.0 | opposite-strand | Septum formation inhibitor MinC, C-terminal domain |
| 4 | PF13614.8 | 0.88 | 230 | 855 | opposite-strand | AAA domain |
| 5 | PF01656.25 | 0.88 | 230 | 855 | opposite-strand | CobQ/CobB/MinD/ParA nucleotide binding domain |
| 6 | PF03776.16 | 0.88 | 230 | 1671.5 | opposite-strand | Septum formation topological specificity factor MinE |
| 7 | PF01612.22 | 0.78 | 202 | 2039.0 | same-strand | 3'-5' exonuclease |
| 8 | PF00570.25 | 0.78 | 202 | 2039.0 | same-strand | HRDC domain |
| 9 | PF00501.30 | 0.68 | 176 | 3258.0 | same-strand | AMP-binding enzyme |
| 10 | PF13193.8 | 0.68 | 177 | 3259 | same-strand | AMP-binding enzyme C-terminal domain |
++ More..