* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LT906470.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01192.24
|
0.73
|
8
|
5661.0
|
same-strand
|
RNA polymerase Rpb6
|
2
|
PF04127.17
|
0.73
|
8
|
4361.5
|
same-strand
|
DNA / pantothenate metabolism flavoprotein
|
3
|
PF02441.21
|
0.73
|
8
|
4361.5
|
same-strand
|
Flavoprotein
|
4
|
PF17764.3
|
0.73
|
8
|
389.0
|
same-strand
|
3'DNA-binding domain (3'BD)
|
5
|
PF04851.17
|
0.82
|
9
|
389
|
same-strand
|
Type III restriction enzyme, res subunit
|
6
|
PF00270.31
|
0.82
|
9
|
389
|
same-strand
|
DEAD/DEAH box helicase
|
7
|
PF18319.3
|
0.73
|
8
|
389.0
|
same-strand
|
PriA DNA helicase Cys-rich region (CRR) domain
|
8
|
PF18074.3
|
0.73
|
8
|
389.0
|
same-strand
|
Primosomal protein N C-terminal domain
|
9
|
PF00551.21
|
0.73
|
8
|
0.0
|
same-strand
|
Formyl transferase
|
10
|
PF02911.20
|
0.73
|
8
|
0.0
|
same-strand
|
Formyl transferase, C-terminal domain
|
11
|
PF01189.19
|
0.73
|
8
|
1760.5
|
same-strand
|
16S rRNA methyltransferase RsmB/F
|
12
|
PF01029.20
|
0.73
|
8
|
1760.5
|
same-strand
|
NusB family
|
++ More..