ProsmORF-pred
Result : B7IA31
Protein Information
Information Type Description
Protein name 50S ribosomal protein L29
NCBI Accession ID CP001182.2
Organism Acinetobacter baumannii (strain AB0057)
Left 3635643
Right 3635840
Strand -
Nucleotide Sequence ATGAAAACTAAAGATCTACGTGAAAAATCGGTAGAAGAGTTGAAAGCTTTGCTTGATGAGCAACAGCTTAACCAATTCCGTCTTCGTATGGCGAAAGCAACTGGTCAGTTGGGTAAATCGCACGAAGTGCAAGTTGCTCGTAAGACAATTGCTCGTATTAAGACACTCCTTACCGAAAAACAGGGGAACGGACAATGA
Sequence MKTKDLREKSVEELKALLDEQQLNQFRLRMAKATGQLGKSHEVQVARKTIARIKTLLTEKQGNGQ
Source of smORF Swiss-Prot
Function The ORF matches to the profile of cl09943. Profile Description: N/A. This family represents the N-terminal region (approximately 8 residues) of the eukaryotic mitochondrial 39-S ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins (MRPs) are the counterparts of the cytoplasmic ribosomal proteins, in that they fulfil similar functions in protein biosynthesis. However, they are distinct in number, features and primary structure.
Pubmed ID 18931120
Domain CDD:415815
Functional Category Ribosomal_protein
Uniprot ID B7IA31
ORF Length (Amino Acid) 65
++ More..
Conservation Analysis
Conservation Analysis
No. of Species: 467
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 2476533 2476730 + NZ_CP040105.1 Acinetobacter nosocomialis M2
2 2727057 2727254 - NC_016603.1 Acinetobacter pittii PHEA-2
3 2393867 2394064 + NZ_CP070518.1 Acinetobacter calcoaceticus
4 446994 447191 + NZ_CP053391.1 Acinetobacter lactucae
5 441977 442174 + NZ_CP015121.1 Acinetobacter baumannii
6 458379 458576 + NC_014259.1 Acinetobacter oleivorans DR1
7 407951 408148 + NZ_CP030880.1 Acinetobacter haemolyticus
8 3535109 3535306 + NZ_CP041970.1 Acinetobacter dispersus
9 476195 476392 + NZ_CP065820.1 Acinetobacter seifertii
10 454476 454673 + NZ_CP024632.1 Acinetobacter junii
11 3130313 3130510 - NC_005966.1 Acinetobacter baylyi ADP1
12 471923 472120 + NZ_CP016895.1 Acinetobacter larvae
13 411787 411984 + NZ_CP044483.1 Acinetobacter schindleri
14 196981 197178 - NZ_CP071766.1 Acinetobacter towneri
15 493147 493344 - NZ_CP012808.1 Acinetobacter equi
16 497795 497992 + NZ_CP035934.2 Acinetobacter cumulans
17 3144894 3145091 - NZ_CP032134.1 Acinetobacter chinensis
18 4149060 4149257 - NZ_AP014630.1 Acinetobacter guillouiae
19 475815 476012 + NZ_CP049801.1 Acinetobacter shaoyimingii
20 548551 548748 + NZ_CP029397.2 Acinetobacter defluvii
21 419286 419483 + NZ_CP049916.1 Acinetobacter lanii
22 2362332 2362529 - NZ_CP045650.1 Acinetobacter wanghuae
23 2332986 2333192 - NZ_CP031222.1 Aquirhabdus parva
24 380105 380302 + NZ_CP065728.1 Moraxella nonliquefaciens
25 2657561 2657758 - NZ_CP030241.1 Moraxella bovis
26 1702116 1702313 - NZ_CP011381.2 Moraxella bovoculi
27 1798609 1798806 - NZ_CP011158.1 Moraxella ovis
28 157971 158168 - NZ_LR134343.1 Moraxella cuniculi
29 986070 986276 - NZ_CP014234.1 Moraxella osloensis
30 1556098 1556295 - NC_014147.1 Moraxella catarrhalis BBH18
31 701950 702147 + NZ_CP014945.1 Psychrobacter alimentarius
32 600190 600387 + NC_007204.1 Psychrobacter arcticus 273-4
33 885910 886107 - NZ_CP012678.1 Psychrobacter urativorans
34 597398 597595 + NC_007969.1 Psychrobacter cryohalolentis K5
35 1266863 1267060 - NZ_LR884459.1 Psychrobacter arenosus
36 2255780 2255971 + NZ_CP019343.1 Oceanicoccus sagamiensis
37 1577209 1577400 + NZ_CP014143.1 Microbulbifer aggregans
38 3513824 3514015 - NZ_CP019650.1 Microbulbifer agarilyticus
39 3442561 3442752 - NZ_CP047491.1 Microbulbifer hydrolyticus
40 2013232 2013423 - NC_018868.3 Simiduia agarivorans SA1 = DSM 21679
41 303456 303647 + NZ_CP031416.1 Gallaecimonas mangrovi
42 369505 369696 + NZ_CP051183.1 Bermanella marisrubri
43 547287 547478 + NZ_CP031415.1 Saccharospirillum mangrovi
44 839766 839957 + NC_010995.1 Cellvibrio japonicus Ueda107
45 2620016 2620207 - NZ_CP009977.1 Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759
46 124994 125185 - NC_013456.1 Vibrio antiquarius
47 2996135 2996326 - NZ_CP031781.1 Vibrio parahaemolyticus
48 453034 453225 + NC_008260.1 Alcanivorax borkumensis SK2
49 5303612 5303803 - NZ_CP037952.1 Parashewanella spongiae
50 3678880 3679071 - NC_015559.1 Marinomonas posidonica IVIA-Po-181
51 330891 331082 + NZ_AP018933.1 Zymobacter palmae
52 1774564 1774755 - NZ_CP070273.1 Marinomonas foliarum
53 6025854 6026045 - NZ_CP007142.1 Gynuella sunshinyii YC6258
54 519911 520102 - NZ_CP042382.1 Pistricoccus aurantiacus
55 598823 599029 + NZ_CP014864.1 Microbulbifer thermotolerans
56 4307903 4308094 - NZ_CP061081.1 Marinomonas arctica
57 2702241 2702432 - NZ_CP016414.1 Vibrio scophthalmi
58 361633 361824 + NZ_CP011797.1 Reinekea forsetii
59 410243 410434 - NZ_LT906463.1 Haemophilus pittmaniae
60 255866 256057 + NC_015276.1 Marinomonas mediterranea MMB-1
61 19304 19495 + NZ_CP016180.1 Pasteurella skyensis
62 205832 206023 - NZ_CP009610.1 Haemophilus influenzae
63 301461 301652 - NZ_LS483458.1 Haemophilus haemolyticus
64 216126 216317 - NZ_LS483429.1 Haemophilus aegyptius
65 4198178 4198369 - NC_018691.1 Alcanivorax dieselolei B5
66 2171430 2171621 + NZ_CP046793.1 Vibrio metschnikovii
67 2330636 2330821 + NZ_CP042218.1 Luteimonas granuli
68 983793 983984 - NZ_CP048812.1 Halomonas socia
69 241847 242038 + NZ_CP022358.1 Shewanella bicestrii
70 2183230 2183421 - NZ_CP059569.1 Kingella oralis
71 610734 610925 + NZ_CP005974.1 Photobacterium gaetbulicola Gung47
72 2579866 2580066 - NC_016147.2 Pseudoxanthomonas spadix BD-a59
73 5493839 5494030 - NC_005126.1 Photorhabdus laumondii subsp. laumondii TTO1
74 289747 289941 - NZ_CP059563.1 Conchiformibius steedae
75 132456 132647 + NZ_CP014226.1 Halomonas chromatireducens
76 3589017 3589208 - NZ_CP040449.1 Aeromonas simiae
77 1858973 1859158 + NZ_CP060731.1 Pseudoxanthomonas mexicana
78 4434807 4434998 - NZ_CP041036.1 Shewanella polaris
79 1249182 1249379 + NC_007912.1 Saccharophagus degradans 2-40
80 270171 270362 + NZ_CP071325.1 Photobacterium ganghwense
81 3932028 3932219 - NZ_CP065435.1 Halomonas sp. SS10-MC5
82 2324977 2325168 - NZ_CP031700.1 Neisseria zalophi
83 226556 226747 + NZ_CP069213.1 Shewanella litorisediminis
84 256398 256589 + NC_008700.1 Shewanella amazonensis SB2B
85 4415545 4415736 + NZ_CP020373.1 Shewanella khirikhana
86 4677727 4677918 - NZ_CP046378.1 Shewanella algae
87 4013767 4013958 - NZ_CP037951.1 Parashewanella tropica
88 2618803 2618994 + NZ_CP036200.1 Shewanella maritima
89 2869026 2869211 - NZ_CP029843.1 Lysobacter maris
90 1967454 1967645 - NZ_CP016604.1 Otariodibacter oris
91 616776 616967 + NZ_LS483443.1 Aggregatibacter segnis ATCC 33393
92 3609109 3609300 - NC_020888.1 Thalassolituus oleivorans MIL-1
93 168231 168422 + NZ_CP006954.1 Bibersteinia trehalosi USDA-ARS-USMARC-188
94 2685988 2686173 - NZ_CP041242.1 Lysobacter alkalisoli
95 2878335 2878514 - NZ_CP038254.1 Legionella israelensis
96 640993 641190 + NZ_AP018724.1 Sulfurivermis fontis
97 4232379 4232570 - NZ_CP038498.1 Pectobacterium punjabense
98 5020391 5020582 - NC_010334.1 Shewanella halifaxensis HAW-EB4
99 2095817 2096008 + NC_011566.1 Shewanella piezotolerans WP3
100 5280155 5280346 - NC_009831.1 Shewanella sediminis HAW-EB3
101 5651808 5651999 - NC_010506.1 Shewanella woodyi ATCC 51908
102 127507 127698 + NC_012691.1 Tolumonas auensis DSM 9187
103 1088540 1088731 + NZ_CP028926.1 Pasteurella multocida
104 3419826 3420017 + NZ_CP041783.1 Shewanella donghaensis
105 750673 750864 + NZ_CP021425.1 Oleiphilus messinensis
106 3511207 3511398 - NZ_CP036422.1 Halioglobus maricola
107 1266728 1266919 + NZ_CP046027.1 Neisseria brasiliensis
108 5639164 5639355 - NZ_CP048878.1 Spartinivicinus ruber
109 1918174 1918365 + NZ_CP012362.1 Oblitimonas alkaliphila
110 1604196 1604387 - NZ_CP015031.1 Basfia succiniciproducens
111 2001829 2002020 - NC_006300.1 [Mannheimia] succiniciproducens MBEL55E
112 4255203 4255394 - NZ_CP050150.1 Hafnia alvei
113 2496812 2497003 - NZ_LT906434.1 Neisseria zoodegmatis
114 4750272 4750463 - NC_014012.1 Shewanella violacea DSS12
115 407573 407764 + NZ_CP014782.1 Shewanella psychrophila
116 587711 587902 + NZ_CP070624.1 Photobacterium damselae subsp. damselae
117 2042885 2043076 + NZ_CP030753.1 Actinobacillus pleuropneumoniae
118 1917916 1918107 - NZ_CP007715.1 Actinobacillus equuli subsp. equuli
119 1912618 1912809 - NZ_CP009159.1 Actinobacillus suis ATCC 33415
120 477070 477261 + NZ_CP042220.2 Dickeya poaceiphila
121 4043447 4043638 - NZ_LT615367.1 Dickeya aquatica
122 455021 455212 + NC_012880.1 Musicola paradisiaca Ech703
123 4187248 4187439 - NZ_CP025799.1 Dickeya zeae
124 380343 380534 + NC_012912.1 Dickeya chrysanthemi Ech1591
125 4387154 4387345 - NC_014500.1 Dickeya dadantii 3937
126 3318774 3318965 + NZ_CP009460.1 Dickeya fangzhongdai
127 588214 588405 + NZ_CP015029.1 Frederiksenia canicola
128 1101074 1101265 + NZ_CP031699.1 Neisseria animalis
129 2014082 2014273 + NZ_LT906448.1 Pasteurella dagmatis
130 1562197 1562382 + NZ_AP014940.1 Lysobacter enzymogenes
131 1083696 1083881 + NZ_CP046603.1 Lysobacter soli
132 1192459 1192650 - NZ_LR134327.1 Aggregatibacter aphrophilus ATCC 33389
133 2139388 2139579 + NZ_CP047495.1 Pectobacterium brasiliense
134 481167 481358 + NZ_CP051652.1 Pectobacterium carotovorum
135 522216 522407 + NZ_CP065044.1 Pectobacterium aroidearum
136 4392818 4393009 - NZ_CP034938.1 Pectobacterium odoriferum
137 3205623 3205814 - NZ_CP017482.1 Pectobacterium polaris
138 4737436 4737627 + NZ_CP015749.1 Pectobacterium parmentieri
139 1134004 1134195 - NZ_CP015750.1 Pectobacterium wasabiae CFBP 3304
140 619948 620139 + NZ_CP004387.1 Alcanivorax pacificus W11-5
141 808703 808894 + NZ_CP043042.1 Marinobacter fonticola
142 1967510 1967701 + NZ_CP018139.1 Halomonas aestuarii
143 2626518 2626721 - NZ_CP017415.1 Acidihalobacter yilgarnenesis
144 1956731 1956922 - NZ_CP072524.1 Neisseria sicca
145 427260 427451 + NZ_CP034015.1 Shewanella livingstonensis
146 175062 175253 + NC_008345.1 Shewanella frigidimarina NCIMB 400
147 4742284 4742475 - NZ_CP020472.1 Shewanella japonica
148 252589 252780 + NC_016901.1 Shewanella baltica OS678
149 2056119 2056310 - NZ_CP006944.1 Mannheimia varigena USDA-ARS-USMARC-1312
150 334585 334776 - NZ_CP046531.1 Mannheimia ovis
151 538683 538874 + NZ_CP061280.1 Mannheimia bovis
152 363087 363278 - NZ_CP055305.1 Mannheimia pernigra
153 1593665 1593856 + NC_011852.1 Glaesserella parasuis SH0165
154 2548405 2548596 - NC_021883.1 Mannheimia haemolytica USMARC_2286
155 172416 172607 + NZ_CP022272.1 Shewanella marisflavi
156 183724 183915 + NC_009092.1 Shewanella loihica PV-4
157 87788 87979 + NZ_CP018804.1 Histophilus somni
158 130896 131087 - NZ_LR134167.1 Avibacterium volantium
159 505241 505432 + NZ_CP014544.1 Zhongshania aliphaticivorans
160 3028214 3028405 - NZ_CP043420.1 Kushneria phosphatilytica
161 1364234 1364422 + NZ_CP023406.1 Luteimonas chenhongjianii
162 390625 390816 + NC_017506.1 Marinobacter adhaerens HP15
163 2851611 2851802 - NZ_CP045350.1 Vibrio aquimaris
164 5172657 5172848 - NZ_CP020038.1 Agarilytica rhodophyticola
165 1643860 1644051 - NZ_CP015137.1 Dickeya solani IPO 2222
166 1927419 1927610 - NZ_LR134516.1 Neisseria animaloris
167 3776328 3776519 + NZ_CP051180.1 Ferrimonas lipolytica
168 2096378 2096569 - NZ_CP016605.1 Bisgaardia hudsonensis
169 3843633 3843824 - NZ_CP054301.1 Marinomonas primoryensis
170 3639466 3639657 - NZ_CP021435.1 Halomonas beimenensis
171 2986162 2986353 - NZ_CP044060.1 Aeromonas veronii
172 3242475 3242666 - NZ_CP065745.1 Aeromonas allosaccharophila
173 4452966 4453157 - NZ_AP022188.1 Aeromonas media
174 331747 331938 + NZ_CP050851.1 Aeromonas hydrophila
175 214926 215117 + NC_009901.1 Shewanella pealeana ATCC 700345
176 4402280 4402471 - NZ_CP009125.1 Pectobacterium atrosepticum
177 2361747 2361938 + NZ_CP019448.1 Simonsiella muelleri ATCC 29453
178 288938 289129 + NC_014532.2 Halomonas elongata DSM 2581
179 313416 313607 + NC_014541.1 Ferrimonas balearica DSM 9799
180 2466883 2467077 + NC_013960.1 Nitrosococcus halophilus Nc 4
181 1790538 1790729 - NZ_CP039887.1 Neisseria subflava
182 1956412 1956603 + NZ_CP039886.1 Neisseria flavescens
183 936291 936482 - NZ_CP031325.1 Neisseria polysaccharea
184 1726724 1726915 - NZ_CP021520.1 Neisseria meningitidis
185 1055113 1055304 + NZ_CP012028.1 Neisseria gonorrhoeae
186 457645 457836 - NZ_CP022355.1 Paraphotobacterium marinum
187 1910420 1910611 - NZ_CP031253.1 Neisseria lactamica
188 2716930 2717121 - NZ_AP019651.1 Vibrio taketomensis
189 2853393 2853584 - NZ_CP032093.1 Vibrio alfacsensis
190 3184255 3184446 + NZ_AP019657.1 Vibrio ponticus
191 408956 409147 + NZ_CP044069.1 Vibrio vulnificus
192 280258 280449 + NZ_CP030788.1 Vibrio campbellii
193 255227 255418 + NZ_CP009354.1 Vibrio tubiashii ATCC 19109
194 2822526 2822717 - NZ_CP018312.1 Vibrio rotiferianus
195 1543835 1544026 - NZ_CP019959.1 Vibrio owensii
196 487958 488149 + NZ_CP009467.1 Vibrio harveyi
197 1956313 1956504 - NZ_CP025792.1 Vibrio jasicida 090810c
198 626761 626952 + NZ_AP014862.1 Pseudomonas furukawaii
199 919006 919197 - NZ_CP022278.1 Neisseria chenwenguii
200 2269486 2269671 + NZ_CP060820.1 Lysobacter solisilvae (ex Woo and Kim 2020)
201 3824373 3824564 - NZ_CP012621.1 Zobellella denitrificans
202 697273 697464 + NZ_CP047698.1 Pseudomonas knackmussii
203 4762928 4763119 - NC_002516.2 Pseudomonas aeruginosa PAO1
204 6417623 6417814 - NZ_CP048833.1 Pseudomonas multiresinivorans
205 3789526 3789717 - NZ_CP020931.1 Marinobacter salarius
206 2278126 2278317 - NZ_CP035688.1 Vibrio metoecus
207 2620372 2620563 - NZ_AP014524.1 Vibrio cholerae MS6
208 3096292 3096483 + NZ_CP014035.2 Vibrio fluvialis
209 2674030 2674221 - NZ_CP017715.1 Marinobacter salinus
210 1695263 1695454 + NZ_LS483369.1 Neisseria cinerea
211 2736720 2736917 - NZ_CP072793.1 Thiothrix unzii
212 1877331 1877516 - NZ_CP071517.1 Lysobacter arenosi
213 620673 620864 + NZ_CP031093.1 Hydrocarboniclastica marina
214 233623 233814 + NZ_CP061941.1 Marinomonas algicola
215 200815 201006 + NC_007954.1 Shewanella denitrificans OS217
216 4296001 4296192 - NZ_LR134376.1 Aeromonas encheleia
217 3819190 3819381 + NZ_CP051883.1 Aeromonas salmonicida
218 876830 877015 + NZ_LS483377.1 Stenotrophomonas maltophilia
219 2993065 2993256 + NZ_CP048711.1 Kineobactrum salinum
220 336329 336517 + NZ_CP029556.1 Lysobacter oculi
221 2404644 2404829 + NC_017856.1 Methylophaga frappieri
222 2398076 2398270 - NZ_AP018725.1 Sulfuriflexus mobilis
223 138839 139030 + NZ_CP047349.1 Proteus terrae subsp. cibarius
224 3586908 3587099 + NC_010554.1 Proteus mirabilis HI4320
225 1021521 1021712 + NZ_LR134510.1 Actinobacillus delphinicola
226 4494706 4494891 - NZ_CP011129.1 Lysobacter antibioticus
227 979309 979494 + NZ_CP012900.1 Stenotrophomonas acidaminiphila
228 1708198 1708389 + NZ_CP026364.1 Proteus hauseri
229 4212696 4212881 - NZ_CP011131.1 Lysobacter gummosus
230 2323492 2323683 + NZ_CP041660.1 Catenovulum sediminis
231 3112398 3112589 - NZ_AP014635.1 Vibrio tritonius
232 108042 108233 + NZ_CP015581.1 Tatumella citrea
233 1787332 1787523 + NZ_CP065150.1 Vibrio kanaloae
234 2975575 2975766 - NC_011753.2 Vibrio atlanticus
235 312625 312816 + NZ_CP039700.1 Vibrio cyclitrophicus
236 629258 629449 + NZ_CP043311.1 Pseudomonas lalkuanensis
237 3197153 3197344 + NZ_CP014476.1 Methylomonas denitrificans
238 3262067 3262258 + NZ_CP037953.1 Permianibacter aggregans
239 368050 368241 + NC_011312.1 Aliivibrio salmonicida LFI1238
240 3774474 3774659 - NZ_CP058243.1 Xanthomonas campestris pv. raphani
241 1150043 1150228 + NZ_CP048044.1 Xanthomonas citri
242 4102488 4102679 - NZ_LS483422.1 Providencia heimbachae
243 2545787 2545978 - NZ_CP033078.1 Vibrio zhugei
244 121350 121541 - NZ_CP040990.1 Vibrio furnissii
245 4413698 4413898 - NZ_CP060092.1 Teredinibacter purpureus
246 2682182 2682373 + NZ_CP060414.1 Neisseria musculi
247 898710 898895 + NZ_CP007810.1 Xanthomonas oryzae pv. oryzicola
248 1153706 1153891 + NZ_CP028127.1 Xanthomonas vasicola pv. vasculorum
249 4109999 4110184 + NZ_CP018725.1 Xanthomonas vesicatoria ATCC 35937
250 898124 898309 + NZ_CP033326.1 Xanthomonas cucurbitae
251 905183 905374 + NZ_CP015425.1 [Haemophilus] ducreyi
252 282760 282951 + NZ_AP018689.1 Vibrio aphrogenes
253 317638 317829 + NZ_AP018685.1 Vibrio rumoiensis
254 924436 924621 + NZ_CP037883.1 Stenotrophomonas indicatrix
255 1183190 1183375 + NZ_CP072268.1 Xanthomonas euvesicatoria pv. alfalfae
256 2641251 2641457 + NZ_LR134374.1 Legionella spiritensis
257 418005 418196 + NZ_CP014322.1 Alteromonas addita
258 3728538 3728729 - NC_015554.1 Alteromonas naphthalenivorans
259 4878006 4878197 - NZ_CP015839.1 Marinobacterium aestuarii
260 2377980 2378171 - NZ_CP007446.1 Snodgrassella alvi wkB2
261 3956728 3956919 - NZ_CP011835.1 Azotobacter chroococcum
262 3419658 3419849 + NZ_CP045302.1 Azotobacter salinestris
263 347311 347502 + NZ_CP047475.1 Vibrio astriarenae
264 1185771 1185962 - NZ_CP019706.1 Pantoea alhagi
265 376427 376618 + NZ_CP059571.1 Neisseria bacilliformis
266 2118305 2118496 + NZ_CP042941.1 Atlantibacter hermannii
267 3951757 3951948 - NZ_LR134340.1 Escherichia marmotae
268 1441966 1442157 - NZ_CP053416.1 Salmonella bongori
269 3424575 3424766 - NZ_AP014857.1 Escherichia albertii
270 4346936 4347127 - NC_009792.1 Citrobacter koseri ATCC BAA-895
271 3830478 3830669 + NZ_CP038469.1 Citrobacter tructae
272 3591835 3592026 - NC_003197.2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
273 2832092 2832283 + NZ_CP044098.1 Citrobacter portucalensis
274 2250590 2250781 - NZ_CP033744.1 Citrobacter freundii
275 1657375 1657566 + NZ_LT556085.1 Citrobacter amalonaticus
276 4761695 4761886 + NC_013716.1 Citrobacter rodentium ICC168
277 24999 25190 - NZ_CP045205.1 Citrobacter telavivensis
278 3486478 3486669 - NZ_FO704551.1 Xenorhabdus poinarii G6
279 275720 275911 + NZ_FO704550.1 Xenorhabdus doucetiae
280 3165816 3166007 - NZ_CP060401.1 Xenorhabdus nematophila
281 4192449 4192640 - NZ_CP072455.1 Xenorhabdus budapestensis
282 3161347 3161538 - NZ_CP016176.1 Xenorhabdus hominickii
283 319176 319367 + NZ_CP065534.1 Lonsdalea populi
284 747008 747199 - NZ_CP023009.1 Lonsdalea britannica
285 1082827 1083015 + NZ_CP041335.1 Chitinolyticbacter meiyuanensis
286 824032 824223 + NZ_CP014158.1 Pseudomonas citronellolis
287 3090222 3090413 - NZ_CP028901.1 Algicoccus marinus
288 1823437 1823628 + NZ_CP040863.1 Rodentibacter heylii
289 521069 521254 + NZ_CP046570.1 Xanthomonas albilineans
290 1365085 1365276 + NZ_LR134533.1 Neisseria weaveri
291 2411051 2411236 - NZ_CP016878.1 Xanthomonas hortorum
292 483975 484166 + NC_007963.1 Chromohalobacter salexigens DSM 3043
293 3304652 3304846 - NZ_CP043869.1 Neptunomonas concharum
294 313484 313675 + NC_017910.1 Shimwellia blattae DSM 4481 = NBRC 105725
295 421894 422085 + NC_016041.1 Glaciecola nitratireducens FR1064
296 1193918 1194109 + NZ_CP023536.1 Providencia alcalifaciens
297 4096903 4097094 - NZ_CP048796.1 Providencia vermicola
298 974058 974249 + NZ_CP029736.1 Providencia rettgeri
299 3564663 3564854 - NZ_CP031123.2 Providencia huaxiensis
300 4872761 4872952 - NC_012962.1 Photorhabdus asymbiotica
301 1682002 1682193 - NZ_CP011104.1 Photorhabdus thracensis
302 4273281 4273472 - NZ_CP027986.1 Enterobacter sichuanensis
303 4396231 4396422 - NZ_CP009756.1 Enterobacter cloacae
304 761757 761945 - NZ_CP021323.1 Kushneria konosiri
305 2537556 2537744 + NZ_CP021358.1 Kushneria marisflavi
306 258061 258276 + NZ_CP060084.1 Teredinibacter haidensis
307 4419370 4419555 - NZ_CP023465.1 Lysobacter capsici
308 2525517 2525708 + NZ_CP011078.1 Yersinia ruckeri
309 4424037 4424228 - NZ_CP031560.1 Dickeya dianthicola
310 2913277 2913462 - NC_017857.3 Methylophaga nitratireducenticrescens
311 2251613 2251804 - NZ_CP046415.1 Guyparkeria halophila
312 3330787 3330978 - NZ_CP029185.2 Limnobaculum parvum
313 373238 373429 + NZ_LS483470.1 Leminorella richardii
314 308899 309090 + NZ_LR134531.1 Pragia fontium
315 1149607 1149798 + NZ_LR134313.1 Neisseria canis
316 820691 820876 - NZ_CP043476.1 Xanthomonas hyacinthi
317 405477 405668 + NZ_CP061511.1 Mixta calida
318 480094 480285 + NZ_CP026377.1 Mixta gaviniae
319 4062580 4062771 - NC_013892.1 Xenorhabdus bovienii SS-2004
320 3799569 3799760 + NZ_CP027107.1 Cronobacter sakazakii
321 226826 227017 + NZ_CP013940.1 Cronobacter malonaticus LMG 23826
322 3886917 3887108 - NZ_CP012257.1 Cronobacter universalis NCTC 9529
323 3964272 3964463 - NZ_CP012264.1 Cronobacter condimenti 1330
324 80807 80998 + NZ_CP012268.1 Cronobacter muytjensii ATCC 51329
325 4054161 4054352 - NZ_CP012266.1 Cronobacter dublinensis subsp. dublinensis LMG 23823
326 408233 408424 + NZ_CP035129.1 Kosakonia cowanii
327 2693153 2693344 - NZ_CP016337.1 Kosakonia sacchari
328 4443214 4443405 - NZ_CP063425.1 Kosakonia pseudosacchari
329 711873 712064 - NZ_CP040428.1 Jejubacter calystegiae
330 425420 425611 + NZ_CP041247.1 Raoultella electrica
331 453854 454045 + NZ_CP014007.2 Kosakonia oryzae
332 1252813 1253004 - NZ_CP026047.1 Raoultella planticola
333 463759 463950 + NZ_CP046672.1 Raoultella ornithinolytica
334 4870195 4870386 - NZ_CP015113.1 Kosakonia radicincitans
335 152894 153085 + NZ_CP034035.1 Brenneria rubrifaciens
336 4801001 4801192 + NZ_CP014137.1 Brenneria goodwinii
337 2446180 2446371 - NZ_CP049115.1 Pantoea stewartii
338 459615 459806 + NC_017554.1 Pantoea ananatis PA13
339 303270 303461 + NZ_CP046670.1 Alteromonas mediterranea
340 3134034 3134219 - NZ_LT853882.1 Xanthomonas fragariae
341 2369859 2370050 - NZ_CP057657.1 Escherichia fergusonii
342 3448568 3448759 - NC_000913.3 Escherichia coli str. K-12 substr. MG1655
343 4183708 4183899 - NC_002695.2 Escherichia coli O157:H7 str. Sakai
344 77537 77728 - NZ_LT907988.1 Orrella dioscoreae
345 2939668 2939859 - NZ_LT960611.1 Vibrio tapetis subsp. tapetis
346 306492 306683 + NZ_CP040021.1 Salinivibrio kushneri
347 726455 726646 + NZ_CP011494.1 Marinobacter psychrophilus
348 1584603 1584794 - NC_016043.1 Taylorella asinigenitalis MCE3
349 404569 404760 + NZ_CP046268.1 Vibrio spartinae
350 171801 171992 + NZ_CP007030.1 Thiomicrospira aerophila AL3
351 424113 424304 + NZ_LN907827.1 Erwinia gerundensis
352 4586657 4586848 - NC_014306.1 Erwinia billingiae Eb661
353 311737 311928 + NZ_LR134373.1 Yersinia pseudotuberculosis
354 1264308 1264499 - NZ_CP007230.1 Yersinia similis
355 3561515 3561706 + NZ_CP045300.1 Kosakonia arachidis
356 4893153 4893344 - NZ_CP048784.1 Serratia liquefaciens
357 4937124 4937315 - NZ_LR134494.1 Serratia quinivorans
358 5009178 5009369 - NC_015567.1 Serratia plymuthica AS9
359 1315241 1315432 - NZ_CP011254.1 Serratia fonticola
360 2025133 2025324 - NZ_AP019007.1 Enterobacter oligotrophicus
361 4199294 4199485 - NZ_AP022508.1 Enterobacter bugandensis
362 4292217 4292408 - NZ_CP017184.1 Enterobacter roggenkampii
363 240778 240969 + NZ_LR134201.1 Cedecea lapagei
364 3007416 3007607 + NZ_CP025034.2 Enterobacter sp. SGAir0187
365 2854778 2854969 - NZ_CP017279.1 Enterobacter ludwigii
366 4054494 4054685 + NZ_CP045769.1 Enterobacter cancerogenus
367 4628334 4628525 - NZ_CP043318.1 Enterobacter chengduensis
368 1199851 1200042 + NZ_CP059565.1 Neisseria wadsworthii
369 972016 972207 - NZ_CP014056.2 Grimontia hollisae
370 376326 376517 + NZ_CP061527.1 Shigella dysenteriae
371 3432951 3433142 - NC_004337.2 Shigella flexneri 2a str. 301
372 2590352 2590543 - NZ_CP009787.1 Yersinia rohdei
373 3007426 3007617 + NZ_CP009781.1 Yersinia aldovae 670-83
374 1568019 1568210 + NZ_CP054043.1 Yersinia mollaretii ATCC 43969
375 4364585 4364776 - NZ_CP043727.1 Yersinia canariae
376 336370 336561 + NZ_CP011118.1 Yersinia enterocolitica
377 4378691 4378882 - NZ_CP032487.1 Yersinia hibernica
378 140799 140990 + NZ_CP046293.1 Yersinia intermedia
379 742201 742392 + NZ_CP013124.1 Pseudomonas mendocina S5.2
380 4573811 4574002 - NZ_CP068551.1 Pseudomonas khazarica
381 550214 550411 + NZ_CP043929.1 Methylomonas rhizoryzae
382 4806682 4806873 - NZ_LT906479.1 Serratia ficaria
383 2903104 2903295 + NZ_CP014136.1 Gibbsiella quercinecans
384 209708 209899 + NZ_AP022843.1 Halomonas hydrothermalis
385 454278 454469 + NZ_CP008849.1 Alteromonas australica
386 1115439 1115630 - NZ_CP065640.1 Serratia rubidaea
387 395848 396039 + NZ_AP023184.1 Buttiauxella agrestis
388 461528 461719 + NZ_CP045845.1 Kluyvera intermedia
389 4176216 4176407 - NZ_CP012871.1 [Enterobacter] lignolyticus
390 428652 428843 + NZ_LR134475.1 Klebsiella aerogenes
391 236256 236447 + NZ_CP023525.1 Cedecea neteri
392 424847 425038 + NZ_CP065838.1 Klebsiella quasipneumoniae
393 4866194 4866385 - NC_016845.1 Klebsiella pneumoniae subsp. pneumoniae HS11286
394 434382 434573 + NZ_CP054254.1 Klebsiella variicola
395 426987 427178 + NZ_CP050508.1 Raoultella terrigena
396 507533 507724 + NZ_CP060111.1 Klebsiella michiganensis
397 546682 546873 + NZ_CP036175.1 Klebsiella huaxiensis
398 3612280 3612471 - NZ_CP034148.1 Pantoea agglomerans
399 459093 459284 + NZ_CP045720.1 Pantoea eucalypti
400 469229 469420 + NZ_CP038853.1 Pantoea vagans
401 4032625 4032816 + NZ_CP067057.1 Rahnella aceris
402 3481743 3481934 - NC_013961.1 Erwinia amylovora CFBP1430
403 316910 317101 + NZ_CP023567.1 Erwinia pyrifoliae
404 4143651 4143842 - NZ_CP034752.1 Jinshanibacter zhutongyuii
405 1610165 1610356 - NZ_CP021060.1 Taylorella equigenitalis
406 1673096 1673287 + NZ_CP031252.1 Neisseria elongata
407 5730 5897 - NZ_LR134417.1 Legionella adelaidensis
408 379883 380077 + NC_012968.1 Methylotenera mobilis JLW8
409 157075 157266 + NZ_CP007445.1 Gilliamella apicola
410 372941 373132 + NZ_CP013106.1 Halomonas huangheensis
411 110811 111008 + NZ_CP038018.1 Eikenella exigua
412 2719273 2719464 - NZ_CP029347.1 Saliniradius amylolyticus
413 1386174 1386365 + NZ_CP007044.2 Chania multitudinisentens RB-25
414 4229059 4229250 + NZ_CP028271.1 Mixta intestinalis
415 173671 173862 + NZ_CP009056.1 Frischella perrara
416 434593 434787 + NZ_AP018558.1 Hydrogenophilus thermoluteolus
417 2462093 2462284 - NZ_CP022741.1 Vibrio qinghaiensis
418 4338467 4338658 - NC_008709.1 Psychromonas ingrahamii 37
419 2993671 2993862 - NZ_CP023529.1 Lelliottia amnigena
420 4306684 4306875 - NC_015968.1 Enterobacter soli
421 3528382 3528573 - NC_010694.1 Erwinia tasmaniensis Et1/99
422 237269 237460 + NZ_CP028897.1 Dongshaea marina
423 143333 143539 - NZ_CP009654.1 Francisella frigiditurris
424 702038 702229 - NZ_CP059082.1 Halomonas titanicae
425 340192 340383 + NZ_CP071320.1 Serratia ureilytica
426 4070503 4070694 - NZ_CP016948.1 Serratia surfactantfaciens
427 4842405 4842596 - NZ_CP038662.1 Serratia nematodiphila
428 483191 483382 + NZ_CP006569.1 Sodalis praecaptivus
429 380447 380641 + NC_014207.1 Methylotenera versatilis 301
430 449659 449850 + NZ_CP013990.1 Leclercia adecarboxylata
431 1182275 1182466 + NZ_CP020388.1 Pluralibacter gergoviae
432 981230 981421 + NZ_CP051548.1 Phytobacter diazotrophicus
433 5142160 5142351 + NZ_CP011602.1 Phytobacter ursingii
434 3859165 3859356 - NC_016112.1 Methylotuvimicrobium alcaliphilum 20Z
435 489225 489416 + NZ_CP034036.1 Brenneria nigrifluens DSM 30175 = ATCC 13028
436 392178 392369 + NZ_CP054058.1 Scandinavium goeteborgense
437 3854667 3854873 - NZ_CP019240.1 Rhodoferax antarcticus
438 2622910 2623116 + NZ_CP060711.1 Thermomonas brevis
439 1512034 1512225 + NZ_CP072425.1 Pseudoalteromonas viridis
440 3587043 3587234 - NZ_CP013187.1 Pseudoalteromonas phenolica
441 209169 209360 + NZ_CP065135.1 Halomonas venusta
442 1220634 1220831 + NZ_LT906482.1 Eikenella corrodens
443 2014327 2014518 + NZ_CP023706.1 Edwardsiella tarda
444 287288 287479 + NZ_CP016043.1 Edwardsiella hoshinae
445 3478365 3478556 - NC_012779.2 Edwardsiella ictaluri 93-146
446 1416862 1417053 - NZ_CP006664.1 Edwardsiella anguillarum ET080813
447 2212930 2213118 + NZ_CP058952.1 Chitinibacter fontanus
448 449720 449896 + NZ_CP035033.1 Hydrogenovibrio thermophilus
449 2106696 2106887 - NZ_CP059567.1 Neisseria shayeganii
450 215277 215468 + NZ_CP048602.1 Halomonas piezotolerans
451 1858664 1858852 - NZ_CP041730.1 Chitinimonas arctica
452 1005022 1005216 + NC_014816.1 Asticcacaulis excentricus CB 48
453 3298982 3299176 - NZ_CP012373.2 Beggiatoa leptomitoformis
454 3881901 3882101 - NZ_CP053069.1 Usitatibacter rugosus
455 1660255 1660446 - NZ_CP052766.1 Alteromonas pelagimontana
456 1473757 1473951 - NZ_CP022684.1 Ketobacter alkanivorans
457 4222632 4222823 - NC_015572.1 Methylomonas methanica MC09
458 3846215 3846406 - NZ_CP036536.1 Salinimonas lutimaris
459 3262894 3263100 + NZ_CP025611.1 Niveispirillum cyanobacteriorum
460 1480991 1481191 - NZ_CP038017.1 Allofrancisella frigidaquae
461 1552205 1552405 - NZ_CP038241.1 Allofrancisella inopinata
462 290670 290861 + NZ_CP031769.1 Salinimonas sediminis
463 1713320 1713514 - NZ_LR699114.1 Aquicella lusitana
464 480266 480460 + NZ_LR699119.1 Aquicella siphonis
465 2979843 2980037 - NZ_AP017928.1 Methylocaldum marinum
466 3157677 3157877 + NZ_CP011412.1 Sedimenticola thiotaurini
467 686181 686375 + NZ_AP012547.1 Sulfuritalea hydrogenivorans sk43H
468 3058325 3058537 + NZ_CP051131.1 Parasphingopyxis algicola
++ More..
Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NZ_CP040105.1
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF03947.20 1.0 465 1782.0 same-strand Ribosomal Proteins L2, C-terminal domain
2 PF00181.25 1.0 465 1782.0 same-strand Ribosomal Proteins L2, RNA binding domain
3 PF00203.23 0.97 454 1488 same-strand Ribosomal protein S19
4 PF00237.21 0.99 462 1142 same-strand Ribosomal protein L22p/L17e
5 PF00189.22 1.0 467 423.0 same-strand Ribosomal protein S3, C-terminal domain
6 PF07650.19 1.0 467 423.0 same-strand KH domain
7 PF00252.20 0.97 452 0 same-strand Ribosomal protein L16p/L10e
8 PF00366.22 0.99 463 0.0 same-strand Ribosomal protein S17
9 PF00238.21 0.93 435 418.5 same-strand Ribosomal protein L14p/L23e
10 PF17136.6 0.94 437 801.0 same-strand Ribosomal proteins 50S L24/mitochondrial 39S L24
11 PF00467.31 0.68 317 801.0 same-strand KOW motif
12 PF00673.23 0.95 442 1131 same-strand ribosomal L5P family C-terminus
13 PF00281.21 0.95 442 1131 same-strand Ribosomal protein L5
14 PF00253.23 0.89 417 1684.0 same-strand Ribosomal protein S14p/S29e
++ More..