* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LT635479.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF03755.15
|
0.75
|
6
|
2751.5
|
same-strand
|
YicC-like family, N-terminal region
|
2
|
PF08340.13
|
0.75
|
6
|
2751.5
|
same-strand
|
Domain of unknown function (DUF1732)
|
3
|
PF00625.23
|
0.88
|
7
|
2087
|
same-strand
|
Guanylate kinase
|
4
|
PF13238.8
|
0.75
|
6
|
2082.5
|
same-strand
|
AAA domain
|
5
|
PF01192.24
|
0.88
|
7
|
1813
|
same-strand
|
RNA polymerase Rpb6
|
6
|
PF00919.22
|
1.0
|
8
|
387.0
|
same-strand
|
Uncharacterized protein family UPF0004
|
7
|
PF04055.23
|
1.0
|
8
|
387.0
|
same-strand
|
Radical SAM superfamily
|
8
|
PF18693.3
|
1.0
|
8
|
387.0
|
same-strand
|
TRAM domain
|
9
|
PF01938.22
|
0.88
|
7
|
387
|
same-strand
|
TRAM domain
|
10
|
PF02464.19
|
1.0
|
8
|
4.0
|
same-strand
|
Competence-damaged protein
|
11
|
PF00994.26
|
0.62
|
5
|
4
|
same-strand
|
Probable molybdopterin binding domain
|
12
|
PF18146.3
|
0.62
|
5
|
4
|
same-strand
|
Damage-inducible protein CinA KH domain
|
++ More..