Result : B7GQC3
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L35 |
| NCBI Accession ID | CP001095.1 |
| Organism | Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) |
| Left | 1068306 |
| Right | 1068500 |
| Strand | + |
| Nucleotide Sequence | ATGCCGAAGATGAAAACTAATTCCGCCGCTTCCAAGCGCGCCAAGATCACCGGCACCGGCAAGGTGAAGCATGTCGGTTCCGCCATGCGCCACAACCTCGAGCACAAGTCCGCTCGCAAGCGCCGTGAACTGTCCGCCGACGATGTGCTGCGCGGCGGCCAGGCCAAGAAGCTGCACCAGCTTCTGCAGAAGTGA |
| Sequence | MPKMKTNSAASKRAKITGTGKVKHVGSAMRHNLEHKSARKRRELSADDVLRGGQAKKLHQLLQK |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00392. Profile Description: Ribosomal protein L35. This ribosomal protein is found in bacteria and organelles only. It is not closely related to any eukaryotic or archaeal ribosomal protein. [Protein synthesis, Ribosomal proteins: synthesis and modification] |
| Pubmed ID | 19033196 21270894 |
| Domain | CDD:412354 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | B7GQC3 |
| ORF Length (Amino Acid) | 64 |
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| Conservation Analysis |
No. of Species: 97
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1428333 | 1428527 | - | NZ_CP026999.1 | Bifidobacterium longum |
| 2 | 1429388 | 1429582 | - | NZ_CP006712.1 | Bifidobacterium breve JCM 7017 |
| 3 | 729443 | 729637 | + | NZ_AP012322.1 | Bifidobacterium angulatum DSM 20098 = JCM 7096 |
| 4 | 1513509 | 1513703 | - | NZ_CP028341.1 | Bifidobacterium adolescentis |
| 5 | 2828741 | 2828935 | + | NZ_CP062938.1 | Bifidobacterium eulemuris |
| 6 | 2955895 | 2956089 | - | NZ_CP062948.1 | Bifidobacterium lemurum |
| 7 | 17440 | 17634 | - | NZ_CP062948.1 | Bifidobacterium lemurum |
| 8 | 1689614 | 1689808 | - | NZ_AP012326.1 | Bifidobacterium dentium JCM 1195 = DSM 20436 |
| 9 | 1402039 | 1402233 | - | NZ_AP012325.1 | Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 |
| 10 | 1457019 | 1457213 | - | NZ_CP025199.1 | Bifidobacterium pseudocatenulatum |
| 11 | 749296 | 749490 | - | NZ_CP011786.1 | Bifidobacterium actinocoloniiforme DSM 22766 |
| 12 | 1369285 | 1369479 | - | NZ_CP022544.1 | Bifidobacterium pseudolongum |
| 13 | 2087455 | 2087649 | - | NZ_AP012331.1 | Bifidobacterium scardovii JCM 12489 = DSM 13734 |
| 14 | 629045 | 629239 | + | NZ_CP006018.1 | Bifidobacterium indicum LMG 11587 = DSM 20214 |
| 15 | 644897 | 645091 | + | NZ_CP007287.1 | Bifidobacterium coryneforme |
| 16 | 807992 | 808186 | + | NC_018720.1 | Bifidobacterium asteroides PRL2011 |
| 17 | 2167141 | 2167332 | - | NZ_CP018044.1 | Bifidobacterium choerinum |
| 18 | 808511 | 808705 | + | NZ_AP012333.1 | Parascardovia denticolens DSM 10105 = JCM 12538 |
| 19 | 1039142 | 1039336 | - | NZ_AP012334.1 | Scardovia inopinata JCM 12537 |
| 20 | 1765137 | 1765331 | - | NZ_CP061539.1 | Rothia terrae |
| 21 | 1666788 | 1666982 | - | NZ_CP061538.1 | Rothia amarae |
| 22 | 1759969 | 1760163 | - | NZ_CP056080.1 | Rothia nasimurium |
| 23 | 2415878 | 2416072 | + | NZ_CP049253.1 | Microbacterium amylolyticum |
| 24 | 3095488 | 3095682 | - | NZ_CP032630.1 | Protaetiibacter intestinalis |
| 25 | 780133 | 780327 | + | NZ_LR134479.1 | Rothia aeria |
| 26 | 1755787 | 1755981 | + | NC_014643.1 | Rothia dentocariosa ATCC 17931 |
| 27 | 1953623 | 1953817 | - | NZ_CP038256.1 | Microbacterium sediminis |
| 28 | 278921 | 279127 | - | NZ_CP040635.1 | Acidipropionibacterium jensenii |
| 29 | 2048147 | 2048341 | - | NZ_CP049933.1 | Leucobacter coleopterorum |
| 30 | 2823932 | 2824126 | + | NZ_CP035494.1 | Microbacterium protaetiae |
| 31 | 2350690 | 2350884 | - | NZ_CP031425.1 | Microbacterium foliorum |
| 32 | 1356337 | 1356531 | + | NZ_CP031422.1 | Microbacterium oxydans |
| 33 | 779590 | 779784 | - | NZ_AP017457.1 | Aurantimicrobium minutum |
| 34 | 1916459 | 1916653 | + | NZ_CP013254.1 | Kocuria flava |
| 35 | 756251 | 756445 | - | NZ_CP049863.1 | Leucobacter viscericola |
| 36 | 3375690 | 3375896 | + | NZ_CP019400.1 | Acidipropionibacterium acidipropionici |
| 37 | 34062 | 34256 | + | NZ_CP060716.1 | Leucobacter denitrificans |
| 38 | 1824664 | 1824858 | - | NZ_CP012507.1 | Kocuria palustris |
| 39 | 3039253 | 3039447 | - | NZ_CP035491.1 | Agromyces protaetiae |
| 40 | 2909793 | 2909987 | + | NZ_CP032624.1 | Gryllotalpicola protaetiae |
| 41 | 2486883 | 2487089 | - | NZ_CP025198.1 | Acidipropionibacterium virtanenii |
| 42 | 1075606 | 1075800 | + | NZ_CP064760.1 | Microbacterium schleiferi |
| 43 | 3235734 | 3235928 | - | NZ_CP071883.1 | Curtobacterium flaccumfaciens pv. flaccumfaciens |
| 44 | 280855 | 281052 | + | NZ_CP035810.1 | Brevibacterium luteolum |
| 45 | 36646 | 36840 | - | NZ_CP061344.1 | Microbacterium hominis |
| 46 | 2374974 | 2375168 | - | NZ_CP018762.1 | Microbacterium aurum |
| 47 | 388657 | 388851 | - | NZ_CP049255.1 | Microbacterium endophyticum |
| 48 | 1789718 | 1789924 | - | NZ_LT906441.1 | Cutibacterium granulosum |
| 49 | 1158071 | 1158265 | + | NZ_CP035037.1 | Leucobacter muris |
| 50 | 563035 | 563229 | - | NZ_CP035806.1 | Leucobacter triazinivorans |
| 51 | 1895795 | 1895992 | - | NZ_CP035504.1 | Kocuria indica |
| 52 | 1206075 | 1206269 | + | NZ_CP047186.1 | Rathayibacter tanaceti |
| 53 | 1166261 | 1166455 | + | NZ_CP015515.1 | Rathayibacter tritici |
| 54 | 2093088 | 2093282 | - | NZ_CP044231.1 | Microbacterium caowuchunii |
| 55 | 7644294 | 7644488 | + | NZ_CP023688.1 | Streptomyces rimosus |
| 56 | 858361 | 858555 | + | NZ_CP028129.1 | Rathayibacter rathayi |
| 57 | 388519 | 388713 | + | NZ_CP028130.1 | Rathayibacter iranicus |
| 58 | 1443368 | 1443562 | + | NZ_CP047180.1 | Rathayibacter festucae |
| 59 | 1165396 | 1165590 | + | NZ_CP031423.1 | Microbacterium lemovicicum |
| 60 | 2050548 | 2050742 | - | NC_022438.1 | Leifsonia xyli subsp. cynodontis DSM 46306 |
| 61 | 297056 | 297256 | + | NZ_AP013035.1 | Thermosulfidibacter takaii ABI70S6 |
| 62 | 1805908 | 1806102 | - | NZ_CP023691.1 | Streptomyces platensis |
| 63 | 4199343 | 4199543 | + | NZ_CP041217.1 | Saccharibacillus brassicae |
| 64 | 1894862 | 1895062 | - | NZ_CP036281.1 | Polystyrenella longa |
| 65 | 1399239 | 1399433 | - | NZ_CP072931.1 | Streptomyces auratus AGR0001 |
| 66 | 1002866 | 1003060 | + | NZ_LT593929.1 | Propionibacterium freudenreichii |
| 67 | 2809944 | 2810138 | - | NZ_CP017146.1 | Marisediminicola antarctica |
| 68 | 2578546 | 2578740 | - | NZ_CP070326.1 | Streptomyces noursei |
| 69 | 1778925 | 1779119 | - | NZ_CP019457.1 | Streptomyces lydicus |
| 70 | 4543520 | 4543720 | + | NZ_CP016809.1 | Paenibacillus ihbetae |
| 71 | 2309290 | 2309484 | - | NZ_CP047020.1 | Streptomyces broussonetiae |
| 72 | 7766568 | 7766762 | + | NZ_CP017248.1 | Streptomyces fodineus |
| 73 | 2289801 | 2289995 | - | NZ_CP020569.1 | Streptomyces gilvosporeus |
| 74 | 8000124 | 8000318 | - | NZ_CP016279.1 | Streptomyces griseochromogenes |
| 75 | 7947348 | 7947542 | + | NZ_CP023689.1 | Streptomyces chartreusis |
| 76 | 2306227 | 2306421 | - | NZ_CP034463.1 | Streptomyces aquilus |
| 77 | 1589993 | 1590187 | - | NZ_CP045096.1 | Streptomyces phaeolivaceus |
| 78 | 1836621 | 1836815 | - | NZ_CP015098.1 | Streptomyces qaidamensis |
| 79 | 1704552 | 1704746 | - | NZ_CP012382.1 | Streptomyces ambofaciens ATCC 23877 |
| 80 | 7955081 | 7955275 | + | NZ_CP022744.1 | Streptomyces lincolnensis |
| 81 | 1714524 | 1714718 | - | NZ_CP010849.1 | Streptomyces cyaneogriseus subsp. noncyanogenus |
| 82 | 6456977 | 6457171 | + | NZ_LN831790.1 | Streptomyces leeuwenhoekii |
| 83 | 7715634 | 7715828 | + | NZ_CP032427.1 | Streptomyces griseorubiginosus |
| 84 | 979623 | 979817 | + | NZ_CP031421.1 | Microbacterium oleivorans |
| 85 | 1332604 | 1332798 | - | NZ_CP015866.1 | Streptomyces parvulus |
| 86 | 8183139 | 8183333 | + | NC_013929.1 | Streptomyces scabiei 87.22 |
| 87 | 902387 | 902581 | - | NZ_CP031194.1 | Streptomyces paludis |
| 88 | 2189418 | 2189612 | - | NZ_CP023690.1 | Streptomyces spectabilis |
| 89 | 2642356 | 2642550 | - | NZ_CP031455.1 | Streptomyces olivoreticuli subsp. olivoreticuli |
| 90 | 5937759 | 5937953 | + | NC_020990.1 | Streptomyces albidoflavus |
| 91 | 6288603 | 6288797 | + | NZ_CP031742.1 | Streptomyces koyangensis |
| 92 | 7402662 | 7402856 | + | NZ_CP045643.1 | Streptomyces fagopyri |
| 93 | 1449439 | 1449633 | - | NZ_CP072827.1 | Streptomyces mobaraensis NBRC 13819 = DSM 40847 |
| 94 | 7066284 | 7066478 | + | NZ_CP034687.1 | Streptomyces griseoviridis |
| 95 | 7679105 | 7679299 | + | NZ_AP023440.1 | Streptomyces glomeroaurantiacus |
| 96 | 1217141 | 1217335 | - | NZ_AP023439.1 | Streptomyces tuirus |
| 97 | 1398064 | 1398258 | - | NZ_CP023703.1 | Streptomyces galilaeus |
| 98 | 1687572 | 1687766 | - | NC_016109.1 | Kitasatospora setae KM-6054 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP061538.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00453.20 | 1.0 | 97 | 72.5 | same-strand | Ribosomal protein L20 |
| 2 | PF00707.24 | 0.99 | 96 | 98 | same-strand | Translation initiation factor IF-3, C-terminal domain |
| 3 | PF05198.18 | 0.61 | 59 | 77.5 | same-strand | Translation initiation factor IF-3, N-terminal domain |
| 4 | PF00588.21 | 0.75 | 73 | 584 | same-strand | SpoU rRNA Methylase family |
| 5 | PF08032.14 | 0.74 | 72 | 589.5 | same-strand | RNA 2'-O ribose methyltransferase substrate binding |
| 6 | PF08899.13 | 0.72 | 70 | 1132.0 | opposite-strand | Domain of unknown function (DUF1844) |
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