Result : B6YR52
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S21 |
| NCBI Accession ID | AP010656.1 |
| Organism | Azobacteroides pseudotrichonymphae genomovar. CFP2 |
| Left | 576806 |
| Right | 576997 |
| Strand | - |
| Nucleotide Sequence | ATGATTATTGTCTCATTAAAGGAAGGCGAAAACCTTGAGAAAGCGTTAAAAAAATTCAAAAGAAAATTTGAAAGAACTGGTGTCTCAAAAGAACTCAAAAGAAGACAGGCATTTGTCAAGCCTTCCGTCTTGAGAAGAAATCAAAAAATTCATGCGATTTATGCACAAAAGTTTCTTCAATCGGGAGACTGA |
| Sequence | MIIVSLKEGENLEKALKKFKRKFERTGVSKELKRRQAFVKPSVLRRNQKIHAIYAQKFLQSGD |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00529. Profile Description: Ribosomal protein S21. 30S ribosomal protein S21; Reviewed |
| Pubmed ID | 19008447 |
| Domain | CDD:412427 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | B6YR52 |
| ORF Length (Amino Acid) | 63 |
++ More..
| Conservation Analysis |
No. of Species: 169
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2931439 | 2931630 | + | NZ_LT608328.1 | Petrimonas mucosa |
| 2 | 2055075 | 2055266 | + | NC_014734.1 | Paludibacter propionicigenes WB4 |
| 3 | 3677626 | 3677817 | + | NZ_LT605205.1 | Proteiniphilum saccharofermentans |
| 4 | 2917900 | 2918091 | + | NC_015164.1 | Phocaeicola salanitronis DSM 18170 |
| 5 | 3301865 | 3302056 | - | NZ_CP069440.1 | Phocaeicola coprophilus |
| 6 | 1063659 | 1063850 | + | NZ_CP041345.1 | Tenuifilum thalassicum |
| 7 | 2361781 | 2361972 | - | NZ_LT906459.1 | Odoribacter splanchnicus |
| 8 | 3103564 | 3103755 | - | NZ_CP054012.1 | Parabacteroides distasonis |
| 9 | 2572481 | 2572672 | - | NC_014033.1 | Prevotella ruminicola 23 |
| 10 | 1407271 | 1407462 | - | NZ_CP027231.1 | Bacteroides zoogleoformans |
| 11 | 1545352 | 1545543 | - | NZ_AP023049.1 | Alistipes indistinctus |
| 12 | 2705740 | 2705931 | + | NC_018011.1 | Alistipes finegoldii DSM 17242 |
| 13 | 2234956 | 2235147 | - | NZ_AP019736.1 | Alistipes dispar |
| 14 | 246002 | 246193 | + | NZ_LR027382.1 | Alistipes megaguti |
| 15 | 1555534 | 1555725 | - | NZ_CP027234.1 | Bacteroides heparinolyticus |
| 16 | 1337609 | 1337800 | + | NC_014933.1 | Bacteroides helcogenes P 36-108 |
| 17 | 3070795 | 3070986 | + | NZ_CP021904.1 | Alkalitalea saponilacus |
| 18 | 4709415 | 4709606 | - | NZ_LN877293.1 | Bacteroides fragilis |
| 19 | 2219030 | 2219221 | - | NZ_LR215980.1 | Paraprevotella xylaniphila YIT 11841 |
| 20 | 2213750 | 2213941 | - | NZ_CP032819.1 | Butyricimonas faecalis |
| 21 | 1121818 | 1122009 | - | NC_009614.1 | Phocaeicola vulgatus ATCC 8482 |
| 22 | 1124478 | 1124669 | - | NZ_LR699004.1 | Phocaeicola dorei |
| 23 | 2180574 | 2180765 | + | NZ_AP019735.1 | Alistipes communis |
| 24 | 2874088 | 2874279 | + | NZ_LR134384.1 | Prevotella oris |
| 25 | 3867691 | 3867882 | - | NZ_CP015401.2 | Bacteroides caecimuris |
| 26 | 699770 | 699961 | - | NZ_CP040530.1 | Bacteroides thetaiotaomicron |
| 27 | 3430480 | 3430671 | - | NZ_CP012938.1 | Bacteroides ovatus |
| 28 | 141971 | 142162 | - | NZ_CP015402.2 | Muribaculum intestinale |
| 29 | 187140 | 187331 | - | NZ_CP013195.1 | Prevotella enoeca |
| 30 | 1459736 | 1459927 | + | NZ_CP069450.1 | Butyricimonas virosa |
| 31 | 1235946 | 1236140 | + | NZ_LS483447.1 | Porphyromonas crevioricanis |
| 32 | 1168330 | 1168521 | - | NZ_LR134506.1 | Porphyromonas cangingivalis |
| 33 | 2586646 | 2586837 | + | NZ_CP007034.1 | Barnesiella viscericola DSM 18177 |
| 34 | 1168562 | 1168753 | + | NZ_CP045696.1 | Sodaliphilus pleomorphus |
| 35 | 1174233 | 1174424 | - | NZ_CP012074.1 | Prevotella fusca JCM 17724 |
| 36 | 1057796 | 1057987 | - | NZ_CP007451.1 | Draconibacterium orientale |
| 37 | 2002720 | 2002914 | - | NZ_CP019342.1 | Nonlabens tegetincola |
| 38 | 1144452 | 1144646 | + | NZ_CP034549.1 | Nonlabens ponticola |
| 39 | 2245151 | 2245345 | + | NC_020156.1 | Nonlabens dokdonensis DSW-6 |
| 40 | 1355895 | 1356092 | - | NZ_CP013118.1 | Salinivirga cyanobacteriivorans |
| 41 | 991158 | 991352 | + | NC_013061.1 | Pedobacter heparinus DSM 2366 |
| 42 | 103770 | 103961 | - | NZ_CP024727.1 | Prevotella intermedia |
| 43 | 4816043 | 4816234 | - | NZ_CP042436.1 | Mucilaginibacter ginsenosidivorans |
| 44 | 3344134 | 3344310 | + | NZ_AP018042.1 | Labilibaculum antarcticum |
| 45 | 1898006 | 1898197 | - | NZ_CP066775.1 | Mucilaginibacter ginkgonis |
| 46 | 2645522 | 2645710 | - | NC_015177.1 | Pseudopedobacter saltans DSM 12145 |
| 47 | 3584928 | 3585122 | - | NZ_CP010817.1 | Myroides profundi |
| 48 | 1857235 | 1857432 | + | NZ_CP032382.1 | Chryseolinea soli |
| 49 | 4222592 | 4222786 | + | NZ_CP048222.1 | Rhodocytophaga rosea |
| 50 | 68093 | 68287 | + | NZ_CP034930.1 | Apibacter raozihei |
| 51 | 1513867 | 1514061 | + | NZ_CP006828.1 | Ornithobacterium rhinotracheale ORT-UMN 88 |
| 52 | 410223 | 410414 | + | NC_014370.1 | Prevotella melaninogenica ATCC 25845 |
| 53 | 388829 | 389020 | + | NZ_CP023863.1 | Prevotella jejuni |
| 54 | 1981289 | 1981483 | + | NZ_CP029186.1 | Flavobacterium album |
| 55 | 863004 | 863198 | - | NZ_CP012836.1 | Algoriphagus sanaruensis |
| 56 | 3287539 | 3287733 | - | NC_013222.1 | Robiginitalea biformata HTCC2501 |
| 57 | 3473754 | 3473948 | + | NZ_CP012040.1 | Cyclobacterium amurskyense |
| 58 | 3412643 | 3412837 | + | NC_015914.1 | Cyclobacterium marinum DSM 745 |
| 59 | 1771370 | 1771561 | - | NC_010729.1 | Porphyromonas gingivalis ATCC 33277 |
| 60 | 841739 | 841933 | + | NZ_CP060723.1 | Pedobacter roseus |
| 61 | 109484 | 109678 | - | NZ_CP038810.1 | Flavobacterium sangjuense |
| 62 | 1797786 | 1797983 | + | NC_017045.1 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
| 63 | 2754793 | 2754987 | - | NZ_CP040896.1 | Hymenobacter jejuensis |
| 64 | 5218025 | 5218219 | + | NZ_CP024091.1 | Pedobacter ginsengisoli |
| 65 | 2844382 | 2844573 | + | NC_014759.1 | Marivirga tractuosa DSM 4126 |
| 66 | 558186 | 558380 | + | NC_018010.1 | Belliella baltica DSM 15883 |
| 67 | 2675620 | 2675811 | - | NZ_CP038029.1 | Sphingobacterium psychroaquaticum |
| 68 | 1937242 | 1937436 | + | NZ_CP050954.1 | Hymenobacter sp. BT18 |
| 69 | 2130289 | 2130483 | + | NZ_CP009976.1 | Cellulophaga baltica 18 |
| 70 | 2688960 | 2689154 | + | NC_014934.1 | Cellulophaga algicola DSM 14237 |
| 71 | 2604732 | 2604929 | - | NZ_CP033926.1 | Chryseobacterium joostei |
| 72 | 5111049 | 5111246 | - | NZ_LR134386.1 | Chryseobacterium nakagawai |
| 73 | 531611 | 531808 | - | NZ_CP033924.1 | Chryseobacterium lactis |
| 74 | 39938 | 40132 | - | NZ_CP020919.1 | Flavobacterium kingsejongi |
| 75 | 1769533 | 1769727 | - | NZ_CP042476.1 | Antarcticibacterium arcticum |
| 76 | 3677065 | 3677259 | + | NC_015703.1 | Runella slithyformis DSM 19594 |
| 77 | 125775 | 125969 | - | NZ_CP042831.1 | Flavobacterium alkalisoli |
| 78 | 705067 | 705264 | + | NZ_CP020822.1 | Tenacibaculum maritimum |
| 79 | 3566286 | 3566480 | - | NZ_CP047897.1 | Nibribacter ruber |
| 80 | 2704505 | 2704702 | + | NZ_CP015199.1 | Chryseobacterium glaciei |
| 81 | 526348 | 526542 | - | NZ_CP058595.1 | Costertonia aggregata |
| 82 | 1609027 | 1609218 | - | NC_016599.1 | Owenweeksia hongkongensis DSM 17368 |
| 83 | 177843 | 178037 | - | NZ_CP031188.1 | Flavobacterium arcticum |
| 84 | 505831 | 506028 | + | NZ_CP014224.1 | Wenyingzhuangia fucanilytica |
| 85 | 1905471 | 1905665 | - | NZ_CP009621.1 | Pontibacter korlensis |
| 86 | 458875 | 459069 | - | NZ_LR590484.1 | Sphingobacterium thalpophilum |
| 87 | 2295945 | 2296139 | - | NC_017025.1 | Flavobacterium indicum GPTSA100-9 = DSM 17447 |
| 88 | 2707004 | 2707195 | - | NZ_LR590470.1 | Sphingobacterium daejeonense |
| 89 | 3066702 | 3066893 | - | NZ_CP049246.1 | Sphingobacterium lactis |
| 90 | 2697529 | 2697720 | - | NZ_CP030848.1 | Sphingobacterium hotanense |
| 91 | 2360621 | 2360815 | + | NC_015945.1 | Muricauda ruestringensis DSM 13258 |
| 92 | 4133802 | 4134002 | + | NZ_CP007145.1 | Hymenobacter swuensis DY53 |
| 93 | 1370740 | 1370937 | - | NZ_CP018155.1 | Tenacibaculum todarodis |
| 94 | 1995174 | 1995368 | - | NZ_CP022389.1 | Capnocytophaga canimorsus |
| 95 | 591352 | 591546 | - | NC_015167.1 | Cellulophaga lytica DSM 7489 |
| 96 | 2148502 | 2148696 | + | NC_018013.1 | Aequorivita sublithincola DSM 14238 |
| 97 | 1173597 | 1173794 | - | NZ_CP017477.1 | Polaribacter vadi |
| 98 | 597069 | 597263 | - | NZ_CP037922.1 | Hymenobacter radiodurans |
| 99 | 595843 | 596037 | - | NZ_CP022022.1 | Capnocytophaga endodontalis |
| 100 | 43041 | 43235 | - | NC_014230.1 | Croceibacter atlanticus HTCC2559 |
| 101 | 2419884 | 2420081 | + | NZ_CP019419.1 | Polaribacter reichenbachii |
| 102 | 2790243 | 2790437 | - | NZ_CP012643.1 | Rufibacter tibetensis |
| 103 | 198479 | 198673 | - | NZ_CP010777.1 | Rufibacter radiotolerans |
| 104 | 884966 | 885160 | + | NZ_CP040106.1 | Echinicola rosea |
| 105 | 79363 | 79557 | + | NZ_LR134404.1 | Weeksella virosa |
| 106 | 2448248 | 2448442 | - | NZ_CP014766.1 | Pontibacter akesuensis |
| 107 | 2680376 | 2680570 | + | NZ_CP030041.1 | Echinicola strongylocentroti |
| 108 | 3229635 | 3229829 | + | NZ_CP022957.1 | Maribacter cobaltidurans |
| 109 | 627793 | 627987 | - | NZ_CP039456.1 | Changchengzhania lutea |
| 110 | 3475624 | 3475821 | + | NZ_CP061813.1 | Polaribacter haliotis |
| 111 | 2276571 | 2276765 | + | NZ_CP029255.1 | Flavobacterium crocinum |
| 112 | 1515314 | 1515508 | + | NZ_CP022379.1 | Capnocytophaga sputigena |
| 113 | 3520323 | 3520517 | + | NZ_CP040812.1 | Antarcticibacterium flavum |
| 114 | 944194 | 944388 | + | NC_019904.1 | Echinicola vietnamensis DSM 17526 |
| 115 | 991220 | 991414 | + | NC_013162.1 | Capnocytophaga ochracea DSM 7271 |
| 116 | 2378218 | 2378412 | + | NZ_CP011071.1 | Muricauda lutaonensis |
| 117 | 600453 | 600647 | - | NZ_CP043612.1 | Flavobacterium nitrogenifigens |
| 118 | 3211530 | 3211724 | - | NZ_CP047984.1 | Pontibacter russatus |
| 119 | 12247 | 12441 | + | NZ_CP053698.1 | Empedobacter stercoris |
| 120 | 326326 | 326520 | + | NZ_CP040908.1 | Empedobacter falsenii |
| 121 | 1248527 | 1248724 | - | NZ_CP017478.1 | Urechidicola croceus |
| 122 | 2481637 | 2481831 | + | NZ_CP028136.1 | Gramella fulva |
| 123 | 1557314 | 1557508 | + | NZ_CP032050.1 | Euzebyella marina |
| 124 | 1424611 | 1424805 | - | NZ_CP025791.1 | Flavivirga eckloniae |
| 125 | 812776 | 812970 | - | NC_015844.1 | Zobellia galactanivorans |
| 126 | 1329411 | 1329608 | + | NZ_LT899436.1 | Tenacibaculum jejuense |
| 127 | 4426113 | 4426307 | - | NZ_CP021235.1 | Pontibacter actiniarum |
| 128 | 2739377 | 2739571 | + | NZ_CP030104.1 | Flagellimonas maritima |
| 129 | 3683884 | 3684075 | - | NZ_CP032317.1 | Hymenobacter oligotrophus |
| 130 | 548442 | 548636 | - | NZ_CP054494.1 | Flavobacterium columnare |
| 131 | 1677654 | 1677848 | - | NZ_CP029187.1 | Flavobacterium pallidum |
| 132 | 4804237 | 4804431 | + | NZ_CP019288.1 | Kordia antarctica |
| 133 | 4214801 | 4214992 | - | NZ_CP054139.1 | Mucilaginibacter mali |
| 134 | 426934 | 427128 | - | NZ_CP044285.1 | Hymenobacter baengnokdamensis |
| 135 | 1864568 | 1864762 | + | NZ_CP022743.1 | Mucilaginibacter xinganensis |
| 136 | 2436354 | 2436548 | - | NZ_CP055156.1 | Adhaeribacter swui |
| 137 | 2871962 | 2872156 | + | NZ_CP048106.1 | Pontibacter pudoricolor |
| 138 | 1011640 | 1011837 | - | NZ_CP013355.1 | Lutibacter profundi |
| 139 | 6684485 | 6684679 | - | NZ_CP055153.1 | Adhaeribacter radiodurans |
| 140 | 3535244 | 3535402 | - | NZ_CP071878.1 | Mucilaginibacter gossypii |
| 141 | 1454962 | 1455156 | + | NZ_CP013909.1 | Hymenobacter sedentarius |
| 142 | 4515618 | 4515809 | - | NZ_CP032869.1 | Mucilaginibacter celer |
| 143 | 4715551 | 4715745 | + | NZ_CP042437.1 | Mucilaginibacter ginsenosidivorax |
| 144 | 2910879 | 2911073 | - | NZ_CP029145.1 | Hymenobacter nivis |
| 145 | 3994601 | 3994795 | - | NZ_AP017313.1 | Mucilaginibacter gotjawali |
| 146 | 1218618 | 1218815 | + | NZ_CP034161.1 | Epilithonimonas vandammei |
| 147 | 51967 | 52161 | - | NZ_CP020918.1 | Flavobacterium faecale |
| 148 | 6730294 | 6730491 | - | NZ_CP020104.1 | Spirosoma aerolatum |
| 149 | 894892 | 895089 | + | NZ_CP053435.1 | Spirosoma taeanense |
| 150 | 21252 | 21449 | + | NZ_CP014263.1 | Spirosoma montaniterrae |
| 151 | 8263047 | 8263244 | - | NZ_CP050063.1 | Spirosoma aureum |
| 152 | 3237138 | 3237341 | - | NC_015510.1 | Haliscomenobacter hydrossis DSM 1100 |
| 153 | 306163 | 306357 | - | NZ_CP061703.1 | Mesoflavibacter profundi |
| 154 | 2929430 | 2929627 | + | NZ_CP020105.1 | Spirosoma rigui |
| 155 | 2404398 | 2404592 | + | NZ_CP025938.1 | Tamlana carrageenivorans |
| 156 | 1351898 | 1352092 | - | NZ_CP012898.1 | Algibacter alginicilyticus |
| 157 | 3055539 | 3055733 | - | NZ_CP015125.1 | Dokdonia donghaensis DSW-1 |
| 158 | 1840996 | 1841193 | + | NC_015501.1 | Porphyromonas asaccharolytica DSM 20707 |
| 159 | 2477763 | 2477954 | + | NC_015321.1 | Fluviicola taffensis DSM 16823 |
| 160 | 1459847 | 1460041 | + | NZ_CP022378.1 | Capnocytophaga cynodegmi |
| 161 | 1305139 | 1305333 | - | NZ_CP022387.1 | Capnocytophaga stomatis |
| 162 | 1354888 | 1355082 | + | NC_014655.1 | Leadbetterella byssophila DSM 17132 |
| 163 | 1473564 | 1473758 | + | NZ_LT906449.1 | Capnocytophaga haemolytica |
| 164 | 3432212 | 3432403 | - | NZ_CP034120.1 | Glaciecola amylolytica |
| 165 | 512187 | 512378 | + | NC_017770.1 | Solitalea canadensis DSM 3403 |
| 166 | 33202 | 33396 | + | NZ_CP029480.1 | Arcticibacterium luteifluviistationis |
| 167 | 151013 | 151210 | - | NZ_CP042435.1 | Panacibacter ginsenosidivorans |
| 168 | 5939748 | 5939945 | + | NZ_CP048113.1 | Chitinophaga agri |
| 169 | 807078 | 807275 | + | NZ_AP017422.1 | Filimonas lacunae |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LT608328.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00589.24 | 0.88 | 149 | 77.0 | same-strand | Phage integrase family |
| 2 | PF02899.19 | 0.88 | 148 | 77.0 | same-strand | Phage integrase, N-terminal SAM-like domain |
| 3 | PF13495.8 | 0.86 | 146 | 77.0 | same-strand | Phage integrase, N-terminal SAM-like domain |
| 4 | PF02482.21 | 0.82 | 138 | 996.0 | same-strand | Sigma 54 modulation protein / S30EA ribosomal protein |
| 5 | PF00009.29 | 0.63 | 106 | 1922 | same-strand | Elongation factor Tu GTP binding domain |
| 6 | PF03143.19 | 0.62 | 104 | 1927.5 | same-strand | Elongation factor Tu C-terminal domain |
| 7 | PF03144.27 | 0.63 | 106 | 1922 | same-strand | Elongation factor Tu domain 2 |
| 8 | PF01926.25 | 0.63 | 107 | 1920.5 | same-strand | 50S ribosome-binding GTPase |
++ More..