Protein Information |
Information Type | Description |
---|---|
Protein name | EXP02709 |
NCBI Accession ID | |
Organism | Fusobacterium |
Left | |
Right | |
Strand | |
Nucleotide Sequence | ATGATACAATTAAATCAAATAAAGATAATTAAAAAACTAAAAAAAGAATATTTTTGGAGTAGAAGTTTTTTAGTGTTAAGTGTTGGTGGAGCAAGTATAGAAGTTATTAAAAAATATATTCAAGGACAAGGAGGAAAAAATGAAAATAGTTAA |
Sequence | MIQLNQIKIIKKLKKEYFWSRSFLVLSVGGASIEVIKKYIQGQGGKNENS |
Source of smORF | Metagenomic Ribo-seq |
Function | |
Pubmed ID | 32601270 |
Domain | |
Functional Category | Function not yet assigned |
Uniprot ID | |
ORF Length (Amino Acid) | 50 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 1248650 | 1248823 | + | NZ_CP024955.1 | Kyrpidia spormannii |
2 | 1610329 | 1610472 | + | NZ_AP019827.1 | Leptotrichia shahii |
3 | 5850835 | 5850993 | - | NC_016641.1 | Paenibacillus terrae HPL-003 |
4 | 29284 | 29439 | + | NC_014749.1 | Calditerrivibrio nitroreducens DSM 19672 |
5 | 533252 | 533398 | + | NZ_CP018061.1 | Enterococcus mundtii |
6 | 1357963 | 1358136 | + | NC_014098.1 | Kyrpidia tusciae DSM 2912 |
7 | 168854 | 168997 | - | NZ_CP013213.1 | Erysipelothrix larvae |
8 | 1187527 | 1187676 | + | NZ_CP012362.1 | Oblitimonas alkaliphila |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF01385.21 | 0.75 | 6 | 7.0 | same-strand | Probable transposase |
2 | PF07282.13 | 0.75 | 6 | 17 | same-strand | Putative transposase DNA-binding domain |