* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR027382.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01545.23
|
0.75
|
3
|
890
|
same-strand
|
Cation efflux family
|
2
|
PF16916.7
|
0.75
|
3
|
890
|
same-strand
|
Dimerisation domain of Zinc Transporter
|
3
|
PF04542.16
|
1.0
|
4
|
65.0
|
same-strand
|
Sigma-70 region 2
|
4
|
PF07638.13
|
1.0
|
4
|
65.0
|
same-strand
|
ECF sigma factor
|
5
|
PF04545.18
|
1.0
|
4
|
65.0
|
same-strand
|
Sigma-70, region 4
|
6
|
PF03729.15
|
0.75
|
3
|
1145
|
opposite-strand
|
Short repeat of unknown function (DUF308)
|
++ More..