Result : EXP02632
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP02632 |
| NCBI Accession ID | |
| Organism | Lachnospira |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | ATGAGCCTTGAGCAATACGATCAGATTATGAAGGCGGCGCATAATGCGGAATATCTTGCTATGATCGACAGGTCTATGGATCAGCTTTCAAGCGGAAACGGCAAGCAGCACGATCTTATCGAGGTAGACGATGACTAA |
| Sequence | MSLEQYDQIMKAAHNAEYLAMIDRSMDQLSSGNGKQHDLIEVDDD |
| Source of smORF | Metagenomic Ribo-seq |
| Function | |
| Pubmed ID | 32601270 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 45 |
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| Conservation Analysis |
No. of Species: 5
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 4468951 | 4469061 | - | NC_013216.1 | Desulfofarcimen acetoxidans DSM 771 |
| 2 | 806402 | 806515 | + | NZ_LT906446.1 | Megamonas hypermegale |
| 3 | 1094757 | 1094867 | - | NZ_AP019829.2 | Leptotrichia wadei |
| 4 | 1080941 | 1081051 | + | NZ_AP019827.1 | Leptotrichia shahii |
| 5 | 1816641 | 1816754 | - | NZ_AP019822.1 | Pseudoleptotrichia goodfellowii |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LT906446.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF06769.16 | 0.6 | 3 | -7 | same-strand | YoeB-like toxin of bacterial type II toxin-antitoxin system |
++ More..