Result : EXP02594
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP02594 |
| NCBI Accession ID | |
| Organism | Pseudoclavibacter |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | ATGTCGCTCGATACCTACAACAGCCTGACCGAAACCCTGCACCTGCTGAAAACGCCCGCCAACGCCGCCCACCTGCAACGCTCCATTGCCCAGTACCAAAGCGGCCAAGCCGCCCCGCAGGAACTCGCTGATGACTGA |
| Sequence | MSLDTYNSLTETLHLLKTPANAAHLQRSIAQYQSGQAAPQELADD |
| Source of smORF | Metagenomic Ribo-seq |
| Function | |
| Pubmed ID | 32601270 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 45 |
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| Conservation Analysis |
No. of Species: 94
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3608784 | 3608921 | - | NZ_CP013119.1 | Alcaligenes faecalis |
| 2 | 68073 | 68210 | + | NZ_CP033066.1 | Pseudoalteromonas agarivorans |
| 3 | 874156 | 874296 | - | NZ_CP018839.1 | Thauera chlorobenzoica |
| 4 | 4648492 | 4648629 | + | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 5 | 1816488 | 1816625 | - | NZ_CP059082.1 | Halomonas titanicae |
| 6 | 993965 | 994105 | + | NZ_CP028339.1 | Thauera aromatica K172 |
| 7 | 3206748 | 3206885 | - | NZ_AP021881.1 | Sulfuriferula nivalis |
| 8 | 300929 | 301066 | + | NC_006512.1 | Idiomarina loihiensis L2TR |
| 9 | 2646885 | 2647022 | - | NC_008609.1 | Pelobacter propionicus DSM 2379 |
| 10 | 1176201 | 1176341 | - | NZ_CP028897.1 | Dongshaea marina |
| 11 | 3493183 | 3493320 | + | NC_010995.1 | Cellvibrio japonicus Ueda107 |
| 12 | 1160473 | 1160613 | + | NC_017584.1 | Rhodospirillum rubrum F11 |
| 13 | 3214386 | 3214523 | + | NZ_CP041660.1 | Catenovulum sediminis |
| 14 | 1310313 | 1310450 | + | NC_020888.1 | Thalassolituus oleivorans MIL-1 |
| 15 | 23870 | 23983 | + | NZ_AP018558.1 | Hydrogenophilus thermoluteolus |
| 16 | 63086 | 63223 | + | NZ_CP032095.1 | Vibrio alfacsensis |
| 17 | 3745090 | 3745227 | - | NZ_CP034015.1 | Shewanella livingstonensis |
| 18 | 1562714 | 1562851 | + | NZ_CP043869.1 | Neptunomonas concharum |
| 19 | 4286325 | 4286462 | - | NC_015276.1 | Marinomonas mediterranea MMB-1 |
| 20 | 2382953 | 2383090 | + | NZ_CP072425.1 | Pseudoalteromonas viridis |
| 21 | 1389728 | 1389865 | - | NZ_AP022853.1 | Sulfurimicrobium lacus |
| 22 | 363019 | 363156 | + | NZ_AP018689.1 | Vibrio aphrogenes |
| 23 | 821061 | 821198 | + | NZ_CP031962.1 | Pseudoalteromonas tunicata |
| 24 | 159436 | 159573 | - | NZ_CP046794.1 | Vibrio metschnikovii |
| 25 | 1960041 | 1960178 | + | NZ_CP061081.1 | Marinomonas arctica |
| 26 | 426366 | 426506 | + | NZ_CP030086.1 | Polynucleobacter paneuropaeus |
| 27 | 277317 | 277481 | + | NZ_LR884459.1 | Psychrobacter arenosus |
| 28 | 58738 | 58875 | + | NZ_CP045871.1 | Litoricola lipolytica |
| 29 | 2013189 | 2013326 | + | NZ_AP018738.1 | Ferriphaselus amnicola |
| 30 | 1347526 | 1347663 | + | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 31 | 910360 | 910500 | + | NC_006513.1 | Aromatoleum aromaticum EbN1 |
| 32 | 1094450 | 1094593 | + | NZ_CP048812.1 | Halomonas socia |
| 33 | 595353 | 595490 | - | NZ_CP014322.1 | Alteromonas addita |
| 34 | 6094427 | 6094564 | - | NZ_CP021425.1 | Oleiphilus messinensis |
| 35 | 1864460 | 1864597 | - | NZ_CP044069.1 | Vibrio vulnificus |
| 36 | 421732 | 421869 | - | NZ_CP035807.1 | Thiospirochaeta perfilievii |
| 37 | 4207043 | 4207180 | + | NZ_LS483422.1 | Providencia heimbachae |
| 38 | 1209219 | 1209356 | + | NZ_CP018799.1 | Mariprofundus aestuarium |
| 39 | 526755 | 526892 | + | NZ_CP004387.1 | Alcanivorax pacificus W11-5 |
| 40 | 1836577 | 1836717 | - | NZ_AP018722.1 | Thiomicrorhabdus aquaedulcis |
| 41 | 1376372 | 1376512 | + | NZ_AP021888.1 | Thiosulfativibrio zosterae |
| 42 | 165077 | 165187 | - | NZ_AP018795.1 | Acidithiobacillus ferridurans |
| 43 | 807657 | 807794 | - | NC_017857.3 | Methylophaga nitratireducenticrescens |
| 44 | 3066567 | 3066701 | - | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 45 | 610779 | 610913 | + | NC_011313.1 | Aliivibrio salmonicida LFI1238 |
| 46 | 2040373 | 2040516 | - | NZ_CP011504.1 | Burkholderia pyrrocinia |
| 47 | 2364148 | 2364285 | - | NZ_CP036536.1 | Salinimonas lutimaris |
| 48 | 860898 | 861008 | + | NZ_CP045571.1 | Acidithiobacillus thiooxidans ATCC 19377 |
| 49 | 5237050 | 5237178 | - | NZ_AP014862.1 | Pseudomonas furukawaii |
| 50 | 730629 | 730766 | + | NZ_CP065135.1 | Halomonas venusta |
| 51 | 4201959 | 4202096 | + | NZ_CP048796.1 | Providencia vermicola |
| 52 | 950367 | 950510 | - | NC_007511.1 | Burkholderia lata |
| 53 | 86131 | 86274 | + | NZ_CP049138.1 | Paraburkholderia tropica |
| 54 | 227506 | 227649 | - | NZ_CP024936.1 | Paraburkholderia graminis |
| 55 | 307385 | 307528 | + | NC_014718.1 | Mycetohabitans rhizoxinica HKI 454 |
| 56 | 1719292 | 1719414 | + | NZ_CP048833.1 | Pseudomonas multiresinivorans |
| 57 | 367096 | 367233 | - | NC_004578.1 | Pseudomonas syringae pv. tomato str. DC3000 |
| 58 | 879344 | 879454 | - | NZ_CP046269.1 | Vibrio spartinae |
| 59 | 1267378 | 1267518 | - | NC_014394.1 | Gallionella capsiferriformans ES-2 |
| 60 | 7111063 | 7111194 | - | NZ_CP022088.2 | Nocardia brasiliensis |
| 61 | 2112419 | 2112553 | + | NZ_CP018863.1 | Arthrobacter crystallopoietes |
| 62 | 1933015 | 1933152 | + | NZ_CP013737.1 | Herbaspirillum rubrisubalbicans M1 |
| 63 | 2407969 | 2408124 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 64 | 2540855 | 2541010 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 65 | 2515412 | 2515567 | - | NZ_CP046027.1 | Neisseria brasiliensis |
| 66 | 3199829 | 3199966 | + | NC_019753.1 | Crinalium epipsammum PCC 9333 |
| 67 | 771392 | 771529 | - | NZ_CP024608.1 | Massilia violaceinigra |
| 68 | 1612796 | 1612936 | + | NC_012560.1 | Azotobacter vinelandii DJ |
| 69 | 1469059 | 1469202 | + | NZ_CP011835.1 | Azotobacter chroococcum |
| 70 | 4392 | 4520 | + | NZ_CP054605.1 | Sulfitobacter pseudonitzschiae |
| 71 | 3716614 | 3716751 | - | NZ_CP019240.1 | Rhodoferax antarcticus |
| 72 | 1237390 | 1237527 | - | NC_019780.1 | Dactylococcopsis salina PCC 8305 |
| 73 | 1986259 | 1986408 | + | NZ_CP009228.1 | Treponema putidum |
| 74 | 3950409 | 3950546 | - | NZ_CP061800.1 | Desulfonema magnum |
| 75 | 418059 | 418172 | - | NZ_CP054841.1 | Acidovorax antarcticus |
| 76 | 4159397 | 4159543 | - | NZ_CP041185.1 | Janthinobacterium tructae |
| 77 | 839409 | 839546 | + | NZ_CP061799.1 | Desulfonema limicola |
| 78 | 1733560 | 1733694 | + | NZ_CP010311.1 | Geoalkalibacter subterraneus |
| 79 | 70091 | 70201 | + | NZ_CP071614.1 | Rhizobium bangladeshense |
| 80 | 787829 | 787969 | - | NZ_CP019448.1 | Simonsiella muelleri ATCC 29453 |
| 81 | 964297 | 964425 | + | NZ_CP022278.1 | Neisseria chenwenguii |
| 82 | 3577556 | 3577714 | - | NZ_CP061725.1 | Micromonospora craniellae |
| 83 | 3666409 | 3666543 | + | NC_018020.1 | Turneriella parva DSM 21527 |
| 84 | 298643 | 298777 | + | NC_017964.1 | Advenella kashmirensis WT001 |
| 85 | 327648 | 327782 | + | NZ_CP003915.1 | Advenella mimigardefordensis DPN7 |
| 86 | 1474400 | 1474540 | - | NC_004757.1 | Nitrosomonas europaea ATCC 19718 |
| 87 | 4291027 | 4291164 | + | NZ_CP045504.1 | Desulfovibrio sulfodismutans DSM 3696 |
| 88 | 608286 | 608417 | + | NZ_LN794217.1 | Rickettsia monacensis |
| 89 | 15814 | 15951 | - | NZ_CP014782.1 | Shewanella psychrophila |
| 90 | 4378658 | 4378798 | - | NC_016112.1 | Methylotuvimicrobium alcaliphilum 20Z |
| 91 | 12698 | 12835 | - | NC_014012.1 | Shewanella violacea DSS12 |
| 92 | 4670035 | 4670175 | - | NZ_CP035467.1 | Methylotuvimicrobium buryatense |
| 93 | 1960295 | 1960435 | - | NZ_AP022345.1 | Fluviibacter phosphoraccumulans |
| 94 | 3988639 | 3988773 | + | NZ_AP022583.1 | Mycobacterium noviomagense |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP013119.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF06769.16 | 0.85 | 80 | -7.0 | same-strand | YoeB-like toxin of bacterial type II toxin-antitoxin system |
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