Result : B5Y795
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L28 |
| NCBI Accession ID | CP001145.1 |
| Organism | Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / OCM 4 / BT) |
| Left | 265583 |
| Right | 265774 |
| Strand | - |
| Nucleotide Sequence | ATGGCAAGAGTTTGCTCTGTTTGTGGAAAAGGAACCACGTTCGGTCATAATGTGAGCCACTCCAACAGAAGAACCAATCGGCGTTGGGTAGCCAACCTTAAGCGTGTACATGGGCGTTTTCCAGATGGGAAAGTGCGCACCGCTTACGTGTGTGTAAAGTGCTTGAAAGCAGGTAAAGTAGAGATCCTCTAA |
| Sequence | MARVCSVCGKGTTFGHNVSHSNRRTNRRWVANLKRVHGRFPDGKVRTAYVCVKCLKAGKVEIL |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00367. Profile Description: Ribosomal L28 family. This model describes bacterial and chloroplast forms of the 50S ribosomal protein L28, a polypeptide about 60 amino acids in length. Mitochondrial homologs differ substantially in architecture (e.g. SP|P36525 from Saccharomyces cerevisiae, which is 258 amino acids long) and are not included. [Protein synthesis, Ribosomal proteins: synthesis and modification] |
| Pubmed ID | |
| Domain | CDD:412338 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | B5Y795 |
| ORF Length (Amino Acid) | 63 |
++ More..
| Conservation Analysis |
No. of Species: 323
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 265583 | 265774 | - | NC_011295.1 | Coprothermobacter proteolyticus DSM 5265 |
| 2 | 1108168 | 1108356 | + | NZ_LS483468.1 | Rhodococcus coprophilus |
| 3 | 923699 | 923896 | - | NZ_CP042909.1 | Thermosulfurimonas marina |
| 4 | 694167 | 694361 | - | NZ_AP013035.1 | Thermosulfidibacter takaii ABI70S6 |
| 5 | 2263333 | 2263524 | - | NZ_AP017900.1 | Nocardia seriolae |
| 6 | 7991468 | 7991659 | + | NC_022657.1 | Actinoplanes friuliensis DSM 7358 |
| 7 | 513114 | 513299 | - | NZ_CP033719.1 | Propionibacterium acidifaciens |
| 8 | 4975265 | 4975456 | + | NZ_CP015235.1 | Rhodococcus fascians D188 |
| 9 | 2055588 | 2055779 | - | NC_013235.1 | Nakamurella multipartita DSM 44233 |
| 10 | 8842384 | 8842575 | - | NZ_CP022088.2 | Nocardia brasiliensis |
| 11 | 2072091 | 2072282 | - | NZ_CP029146.1 | Rhodococcus ruber |
| 12 | 2441800 | 2441991 | - | NZ_CP022208.1 | Rhodococcus pyridinivorans |
| 13 | 2035275 | 2035466 | - | NZ_LT906450.1 | Rhodococcus rhodochrous |
| 14 | 1403959 | 1404150 | - | NC_014391.1 | Micromonospora aurantiaca ATCC 27029 |
| 15 | 786207 | 786398 | - | NZ_LT821227.1 | Phoenicibacter congonensis |
| 16 | 4347103 | 4347294 | + | NC_006361.1 | Nocardia farcinica IFM 10152 |
| 17 | 7671083 | 7671274 | + | NC_017093.1 | Actinoplanes missouriensis 431 |
| 18 | 376605 | 376796 | + | NZ_AP022599.1 | Mycolicibacterium pulveris |
| 19 | 1436896 | 1437087 | - | NC_009380.1 | Salinispora tropica CNB-440 |
| 20 | 2273276 | 2273467 | - | NZ_AP023396.1 | Nocardia wallacei |
| 21 | 388766 | 388966 | + | NZ_AP014509.1 | Thermotoga caldifontis AZM44c09 |
| 22 | 1849968 | 1850159 | - | NZ_CP058322.1 | Micromonospora carbonacea |
| 23 | 2530773 | 2530964 | + | NZ_CP048813.1 | Rhodococcus triatomae |
| 24 | 5755575 | 5755766 | + | NZ_LR134352.1 | Nocardia asteroides |
| 25 | 4871441 | 4871632 | + | NZ_CP018082.1 | Nocardia mangyaensis |
| 26 | 4838869 | 4839060 | + | NZ_CP041695.1 | Nocardia otitidiscaviarum |
| 27 | 3623828 | 3624019 | - | NZ_CP026746.1 | Nocardia cyriacigeorgica |
| 28 | 3245726 | 3245917 | + | NZ_CP019066.1 | Tsukamurella tyrosinosolvens |
| 29 | 2499514 | 2499705 | - | NZ_AP023172.1 | Rhodococcus qingshengii |
| 30 | 2804775 | 2804966 | + | NZ_LT906469.1 | Mycolicibacter terrae |
| 31 | 3385365 | 3385556 | + | NC_016906.1 | Gordonia polyisoprenivorans VH2 |
| 32 | 367322 | 367513 | + | NZ_AP022589.1 | Mycolicibacter minnesotensis |
| 33 | 4341626 | 4341817 | - | NZ_CP016793.1 | Lentzea guizhouensis |
| 34 | 3520718 | 3520909 | + | NZ_CP027793.1 | Rhodococcus hoagii |
| 35 | 945454 | 945645 | - | NC_013159.1 | Saccharomonospora viridis DSM 43017 |
| 36 | 2234165 | 2234356 | + | NZ_AP022609.1 | Mycolicibacter hiberniae |
| 37 | 3584027 | 3584218 | - | NZ_AP022562.1 | Mycobacterium novum |
| 38 | 2864812 | 2865003 | + | NC_015576.1 | Mycolicibacter sinensis |
| 39 | 3876218 | 3876409 | + | NC_016946.1 | Mycobacterium intracellulare ATCC 13950 |
| 40 | 3993744 | 3993935 | + | NC_016948.1 | Mycobacterium paraintracellulare |
| 41 | 10118293 | 10118484 | + | NZ_CP012752.1 | Kibdelosporangium phytohabitans |
| 42 | 1136504 | 1136695 | + | NZ_CP061725.1 | Micromonospora craniellae |
| 43 | 960818 | 961003 | + | NZ_LT593929.1 | Propionibacterium freudenreichii |
| 44 | 1587682 | 1587867 | - | NZ_LR699011.1 | Roseburia hominis |
| 45 | 3023339 | 3023536 | + | NZ_CP010271.1 | Mycobacteroides saopaulense |
| 46 | 3315522 | 3315716 | - | NZ_AP022583.1 | Mycobacterium noviomagense |
| 47 | 1427337 | 1427528 | - | NZ_CP016353.1 | Prauserella marina |
| 48 | 1723106 | 1723303 | + | NC_009828.1 | Pseudothermotoga lettingae TMO |
| 49 | 1758161 | 1758358 | + | NC_022792.1 | Pseudothermotoga elfii DSM 9442 = NBRC 107921 |
| 50 | 426032 | 426226 | - | NZ_AP022620.1 | Mycolicibacterium anyangense |
| 51 | 2019931 | 2020116 | - | NZ_LR027880.1 | Roseburia intestinalis L1-82 |
| 52 | 1129980 | 1130171 | - | NC_014831.1 | Thermaerobacter marianensis DSM 12885 |
| 53 | 2937586 | 2937777 | + | NC_014158.1 | Tsukamurella paurometabola DSM 20162 |
| 54 | 2582491 | 2582676 | - | NZ_LR134442.1 | Propionibacterium australiense |
| 55 | 656825 | 657016 | - | NC_013170.1 | Cryptobacterium curtum DSM 15641 |
| 56 | 1011008 | 1011199 | - | NZ_CP011402.1 | Denitrobacterium detoxificans |
| 57 | 3096161 | 3096358 | + | NZ_CP024633.1 | Mycobacteroides salmoniphilum |
| 58 | 3228204 | 3228401 | + | NZ_AP018165.1 | [Mycobacterium] stephanolepidis |
| 59 | 3289385 | 3289582 | + | NZ_CP007220.1 | Mycobacteroides chelonae CCUG 47445 |
| 60 | 3326828 | 3327025 | + | NZ_CP014955.1 | Mycobacteroides abscessus |
| 61 | 3525205 | 3525402 | + | NZ_CP011530.1 | Mycobacteroides immunogenum |
| 62 | 3009524 | 3009715 | + | NZ_CP011853.1 | Gordonia phthalatica |
| 63 | 7187957 | 7188148 | + | NZ_CP023865.1 | Actinoplanes teichomyceticus ATCC 31121 |
| 64 | 1618180 | 1618371 | - | NC_013204.1 | Eggerthella lenta DSM 2243 |
| 65 | 3431413 | 3431604 | + | NC_013441.1 | Gordonia bronchialis DSM 43247 |
| 66 | 2213134 | 2213328 | - | NZ_AP022610.1 | Mycolicibacterium madagascariense |
| 67 | 1321532 | 1321726 | - | NZ_AP022605.1 | Mycobacterium doricum |
| 68 | 1437234 | 1437443 | - | NZ_CP014229.1 | Desulfovibrio fairfieldensis |
| 69 | 1311653 | 1311841 | + | NC_007503.1 | Carboxydothermus hydrogenoformans Z-2901 |
| 70 | 4787530 | 4787724 | + | NZ_AP022595.1 | Mycolicibacterium sarraceniae |
| 71 | 2100783 | 2100977 | - | NZ_LR134356.1 | Mycolicibacterium aurum |
| 72 | 764391 | 764585 | - | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 73 | 892409 | 892603 | + | NC_014011.1 | Aminobacterium colombiense DSM 12261 |
| 74 | 3539168 | 3539359 | - | NZ_CP047156.1 | Epidermidibacterium keratini |
| 75 | 5643442 | 5643636 | - | NZ_AP022573.1 | Mycobacterium saskatchewanense |
| 76 | 2473265 | 2473459 | + | NZ_AP022586.1 | Mycolicibacterium litorale |
| 77 | 49316 | 49507 | - | NZ_CP033972.1 | Gordonia insulae |
| 78 | 4551528 | 4551722 | - | NZ_AP022596.1 | Mycolicibacterium helvum |
| 79 | 2698400 | 2698591 | - | NZ_CP059694.1 | Gordonia rubripertincta |
| 80 | 446247 | 446441 | - | NC_012440.1 | Persephonella marina EX-H1 |
| 81 | 2009884 | 2010084 | - | NZ_AP014510.1 | Thermotoga profunda AZM34c06 |
| 82 | 3122061 | 3122255 | + | NZ_AP022581.1 | Mycobacterium lacus |
| 83 | 1887446 | 1887637 | - | NC_022116.1 | Amycolatopsis mediterranei RB |
| 84 | 1005839 | 1006033 | - | NZ_CP013290.1 | Janibacter indicus |
| 85 | 3536265 | 3536450 | - | NZ_CP014989.1 | Serinicoccus hydrothermalis |
| 86 | 6895833 | 6896024 | + | NC_021252.1 | Amycolatopsis keratiniphila |
| 87 | 1774632 | 1774823 | - | NZ_CP008953.1 | Amycolatopsis japonica |
| 88 | 6925142 | 6925333 | + | NZ_CP016174.1 | Amycolatopsis orientalis |
| 89 | 1519730 | 1519921 | - | NC_011661.1 | Dictyoglomus turgidum DSM 6724 |
| 90 | 1335333 | 1335524 | - | NC_011297.1 | Dictyoglomus thermophilum H-6-12 |
| 91 | 6883902 | 6884093 | + | NZ_CP023445.1 | Actinosynnema pretiosum |
| 92 | 7026517 | 7026708 | + | NC_013093.1 | Actinosynnema mirum DSM 43827 |
| 93 | 1970757 | 1970948 | + | NC_014614.1 | Acetoanaerobium sticklandii |
| 94 | 1293914 | 1294099 | - | NZ_CP026952.1 | Aeromicrobium chenweiae |
| 95 | 3331854 | 3332048 | + | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 96 | 3391347 | 3391541 | + | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 97 | 4362491 | 4362685 | + | NZ_AP022560.1 | Mycolicibacterium moriokaense |
| 98 | 5562626 | 5562817 | + | NZ_CP022521.1 | Actinoalloteichus hoggarensis |
| 99 | 6074140 | 6074331 | + | NZ_CP016076.1 | Actinoalloteichus fjordicus |
| 100 | 9572006 | 9572197 | + | NZ_CP034550.1 | Saccharothrix syringae |
| 101 | 1853467 | 1853658 | - | NZ_LR134363.1 | Actinomyces slackii |
| 102 | 3051050 | 3051241 | + | NZ_CP027433.1 | Gordonia iterans |
| 103 | 1195526 | 1195711 | - | NZ_CP045737.1 | Aeromicrobium yanjiei |
| 104 | 1381423 | 1381617 | + | NZ_CP044548.2 | Janibacter melonis |
| 105 | 2481650 | 2481835 | + | NZ_CP038213.1 | Ornithinimicrobium flavum |
| 106 | 3722952 | 3723146 | + | NZ_CP023147.1 | Mycobacterium marseillense |
| 107 | 1969946 | 1970140 | + | NZ_CP029543.1 | Mycobacterium leprae |
| 108 | 2854232 | 2854426 | + | NZ_AP022617.1 | Mycolicibacterium monacense |
| 109 | 859016 | 859201 | + | NC_009664.2 | Kineococcus radiotolerans SRS30216 = ATCC BAA-149 |
| 110 | 2539944 | 2540135 | - | NZ_CP027114.1 | Gordonia alkanivorans |
| 111 | 3636426 | 3636620 | + | NZ_CP009360.4 | Mycobacterium avium subsp. hominissuis |
| 112 | 2172400 | 2172594 | - | NZ_CP025546.1 | Mycobacterium paragordonae |
| 113 | 2406116 | 2406310 | - | NZ_CP011112.1 | Luteipulveratus mongoliensis |
| 114 | 2591419 | 2591607 | + | NC_014830.1 | Intrasporangium calvum DSM 43043 |
| 115 | 700303 | 700491 | + | NC_016630.1 | Filifactor alocis ATCC 35896 |
| 116 | 5318037 | 5318231 | + | NZ_AP022598.1 | Mycolicibacterium parafortuitum |
| 117 | 1782259 | 1782447 | + | NC_008578.1 | Acidothermus cellulolyticus 11B |
| 118 | 1048249 | 1048440 | - | NZ_CP025227.1 | Actinomyces wuliandei |
| 119 | 7894361 | 7894552 | - | NZ_CP031142.1 | Saccharopolyspora pogona |
| 120 | 2123651 | 2123836 | + | NZ_CP040887.1 | Serinicoccus chungangensis |
| 121 | 7106900 | 7107094 | + | NZ_CP053564.1 | Pseudonocardia broussonetiae |
| 122 | 606344 | 606538 | - | NZ_AP022601.1 | Mycobacterium gallinarum |
| 123 | 1521726 | 1521920 | + | NZ_AP022616.1 | Mycolicibacterium phocaicum |
| 124 | 2221815 | 2222009 | - | NZ_CP062008.1 | Mycolicibacterium mucogenicum DSM 44124 |
| 125 | 1792707 | 1792901 | + | NZ_AP022608.1 | Mycolicibacterium gadium |
| 126 | 248041 | 248235 | - | NZ_AP022603.1 | Mycolicibacterium fallax |
| 127 | 2588828 | 2589013 | + | NZ_CP032698.1 | Streptomyces hundungensis |
| 128 | 2594592 | 2594786 | - | NZ_AP022570.1 | Mycolicibacterium poriferae |
| 129 | 430164 | 430376 | - | NC_011978.1 | Thermotoga neapolitana DSM 4359 |
| 130 | 5110611 | 5110802 | + | NC_015312.1 | Pseudonocardia dioxanivorans CB1190 |
| 131 | 881915 | 882109 | + | NZ_AP022568.1 | Mycobacterium simiae |
| 132 | 2298409 | 2298603 | - | NC_008726.1 | Mycolicibacterium vanbaalenii PYR-1 |
| 133 | 1012236 | 1012430 | - | NZ_LR026975.1 | Mycolicibacterium hassiacum DSM 44199 |
| 134 | 4623000 | 4623194 | + | NZ_AP022574.1 | Mycolicibacterium psychrotolerans |
| 135 | 1552813 | 1553007 | + | NZ_AP022593.1 | Mycolicibacterium arabiense |
| 136 | 3185062 | 3185256 | + | NZ_AP022612.1 | Mycolicibacterium confluentis |
| 137 | 2157324 | 2157515 | + | NZ_CP009687.1 | Clostridium aceticum |
| 138 | 4224105 | 4224296 | + | NZ_CP015163.1 | Amycolatopsis albispora |
| 139 | 2406914 | 2407105 | + | NZ_CP020559.1 | Clostridium formicaceticum |
| 140 | 2488385 | 2488579 | + | NZ_AP022563.1 | Mycolicibacterium duvalii |
| 141 | 7932904 | 7933095 | + | NC_019673.1 | Saccharothrix espanaensis DSM 44229 |
| 142 | 1645599 | 1645793 | - | NZ_AP018164.1 | Mycobacterium shigaense |
| 143 | 1815594 | 1815788 | + | NZ_AP022576.1 | Mycobacterium florentinum |
| 144 | 5889031 | 5889225 | + | NZ_CP012150.1 | Mycobacterium goodii |
| 145 | 126608 | 126802 | - | NZ_AP022590.1 | Mycobacterium mantenii |
| 146 | 2151783 | 2151974 | + | NZ_CP061007.1 | Saccharopolyspora spinosa |
| 147 | 2355403 | 2355594 | + | NZ_CP019914.1 | Brachyspira hampsonii |
| 148 | 1412733 | 1412927 | - | NZ_CP011883.2 | Mycobacterium haemophilum DSM 44634 |
| 149 | 5601419 | 5601613 | - | NZ_AP022577.1 | Mycolicibacterium aubagnense |
| 150 | 370811 | 370969 | + | NC_012438.1 | Sulfurihydrogenibium azorense Az-Fu1 |
| 151 | 4947002 | 4947196 | + | NZ_AP022606.1 | Mycobacterium branderi |
| 152 | 802507 | 802698 | - | NZ_CP020468.1 | Actinomyces gaoshouyii |
| 153 | 3141693 | 3141878 | - | NC_014833.1 | Ruminococcus albus 7 = DSM 20455 |
| 154 | 1055884 | 1056096 | - | NZ_CP007389.1 | Thermosipho melanesiensis |
| 155 | 1202626 | 1202814 | - | NZ_CP019870.1 | Clostridioides difficile |
| 156 | 2119133 | 2119327 | - | NZ_CP011491.1 | Mycolicibacterium vaccae 95051 |
| 157 | 1537606 | 1537800 | - | NZ_AP022613.1 | Mycobacterium conspicuum |
| 158 | 505554 | 505748 | + | NZ_AP022615.1 | Mycobacterium heidelbergense |
| 159 | 1552871 | 1553059 | - | NZ_CP021850.1 | Pseudoclostridium thermosuccinogenes |
| 160 | 183190 | 183381 | - | NZ_CP045309.1 | Micromonospora terminaliae |
| 161 | 4957562 | 4957747 | - | NZ_CP023696.1 | Streptomyces fradiae ATCC 10745 = DSM 40063 |
| 162 | 1736874 | 1737068 | - | NZ_LR130759.1 | Mycobacterium basiliense |
| 163 | 1862711 | 1862905 | - | NZ_AP022561.1 | Mycolicibacterium aichiense |
| 164 | 2947284 | 2947475 | + | NZ_CP014228.1 | Actinomyces radicidentis |
| 165 | 2677053 | 2677244 | + | NZ_CP066049.1 | Actinomyces naeslundii |
| 166 | 1631778 | 1631969 | + | NZ_CP066060.1 | Actinomyces oris |
| 167 | 431794 | 431985 | - | NZ_LR134477.1 | Actinomyces viscosus |
| 168 | 2073714 | 2073908 | - | NZ_AP022618.1 | Mycolicibacterium insubricum |
| 169 | 1895440 | 1895631 | - | NZ_AP018920.1 | Pseudonocardia autotrophica |
| 170 | 1343580 | 1343771 | + | NZ_CP017812.1 | Boudabousia tangfeifanii |
| 171 | 3301170 | 3301364 | - | NZ_CP043474.1 | Mycobacterium grossiae |
| 172 | 1323867 | 1324076 | - | NC_011653.1 | Thermosipho africanus TCF52B |
| 173 | 5205514 | 5205708 | - | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
| 174 | 2237376 | 2237567 | - | NC_013947.1 | Stackebrandtia nassauensis DSM 44728 |
| 175 | 418141 | 418335 | - | NZ_AP022582.1 | Mycobacterium seoulense |
| 176 | 5781544 | 5781738 | - | NZ_AP022619.1 | Mycobacterium paraseoulense |
| 177 | 5917357 | 5917542 | - | NZ_CP020700.1 | Streptomyces tsukubensis |
| 178 | 5337358 | 5337552 | + | NZ_AP022572.1 | Mycobacterium shottsii |
| 179 | 4492401 | 4492595 | + | NZ_AP018410.1 | Mycobacterium pseudoshottsii JCM 15466 |
| 180 | 3442294 | 3442488 | - | NZ_CP058277.1 | Mycobacterium marinum |
| 181 | 2962117 | 2962305 | + | NZ_CP014150.1 | Paeniclostridium sordellii |
| 182 | 3492488 | 3492676 | - | NZ_CP034413.2 | Dysosmobacter welbionis |
| 183 | 3760635 | 3760826 | + | NZ_CP045929.1 | Saccharopolyspora coralli |
| 184 | 1795254 | 1795445 | + | NZ_CP048649.1 | Aminipila butyrica |
| 185 | 2577184 | 2577378 | + | NZ_AP022614.1 | Mycobacterium parmense |
| 186 | 4062347 | 4062544 | - | NZ_AP022600.1 | Mycolicibacterium tokaiense |
| 187 | 1171352 | 1171543 | - | NZ_CP046932.1 | Brachyspira hyodysenteriae |
| 188 | 87924 | 88124 | + | NC_013894.1 | Thermocrinis albus DSM 14484 |
| 189 | 1892368 | 1892562 | + | NZ_AP022587.1 | Mycobacterium stomatepiae |
| 190 | 147158 | 147352 | - | NZ_CP014209.1 | Isoptericola dokdonensis DS-3 |
| 191 | 6869919 | 6870110 | + | NC_009142.1 | Saccharopolyspora erythraea NRRL 2338 |
| 192 | 1547790 | 1547981 | + | NZ_CP053642.1 | Actinomyces marmotae |
| 193 | 6043867 | 6044052 | - | NZ_CP020570.1 | Streptomyces violaceoruber |
| 194 | 5497054 | 5497248 | - | NZ_AP022567.1 | Mycolicibacterium mageritense |
| 195 | 1753204 | 1753389 | - | NZ_CP051486.1 | Streptomyces pratensis |
| 196 | 2395249 | 2395416 | + | NZ_CP011502.1 | Aeromicrobium erythreum |
| 197 | 4806077 | 4806271 | + | NZ_CP020809.1 | Mycobacterium dioxanotrophicus |
| 198 | 702846 | 703037 | + | NZ_LT635457.1 | Actinomyces pacaensis |
| 199 | 922055 | 922249 | + | NC_015318.1 | Hippea maritima DSM 10411 |
| 200 | 704234 | 704425 | + | NC_017243.1 | Brachyspira intermedia PWS/A |
| 201 | 9078359 | 9078550 | + | NZ_AP022870.1 | Phytohabitans flavus |
| 202 | 1495687 | 1495872 | + | NC_020990.1 | Streptomyces albidoflavus |
| 203 | 1874723 | 1874908 | + | NZ_CP031742.1 | Streptomyces koyangensis |
| 204 | 1238218 | 1238409 | + | NZ_CP070228.1 | Arcanobacterium phocisimile |
| 205 | 5221995 | 5222186 | + | NZ_AP022871.1 | Phytohabitans suffuscus |
| 206 | 1914227 | 1914418 | - | NZ_LR134476.1 | Trueperella bialowiezensis |
| 207 | 4771426 | 4771611 | - | NZ_CP017316.1 | Streptomyces rubrolavendulae |
| 208 | 3238715 | 3238906 | + | NC_015564.1 | Hoyosella subflava DQS3-9A1 |
| 209 | 1808768 | 1808959 | + | NZ_LS483423.1 | Jonesia denitrificans |
| 210 | 2269014 | 2269199 | + | NC_010572.1 | Streptomyces griseus subsp. griseus NBRC 13350 |
| 211 | 1394893 | 1395078 | + | NZ_LR134406.1 | Arachnia propionica |
| 212 | 518100 | 518291 | + | NZ_CP027228.1 | Mogibacterium diversum |
| 213 | 2067166 | 2067351 | + | NZ_CP023702.1 | Streptomyces nitrosporeus |
| 214 | 751718 | 751909 | + | NZ_CP007519.1 | Trueperella pyogenes |
| 215 | 109211 | 109402 | - | NZ_LR134350.1 | Actinomyces howellii |
| 216 | 2550460 | 2550654 | - | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 217 | 1617456 | 1617647 | - | NZ_AP019004.1 | Phascolarctobacterium faecium |
| 218 | 8349745 | 8349936 | + | NZ_CP007155.1 | Kutzneria albida DSM 43870 |
| 219 | 6480424 | 6480609 | - | NZ_CP027306.1 | Streptomyces atratus |
| 220 | 1639017 | 1639202 | + | NZ_CP065253.1 | Streptomyces clavuligerus |
| 221 | 5284298 | 5284492 | - | NZ_AP022569.1 | Mycobacterium cookii |
| 222 | 1017872 | 1018063 | - | NZ_CP033325.1 | Georgenia faecalis |
| 223 | 5678327 | 5678512 | - | NZ_CP042266.1 | Streptomyces qinzhouensis |
| 224 | 987576 | 987767 | - | NZ_LS483427.1 | Arcanobacterium haemolyticum |
| 225 | 6051405 | 6051590 | - | NC_021177.1 | Streptomyces fulvissimus DSM 40593 |
| 226 | 4235366 | 4235557 | + | NC_013757.1 | Geodermatophilus obscurus DSM 43160 |
| 227 | 3479529 | 3479723 | - | NZ_AP022588.1 | Mycolicibacterium sediminis |
| 228 | 945982 | 946176 | + | NC_013522.1 | Thermanaerovibrio acidaminovorans DSM 6589 |
| 229 | 330526 | 330717 | + | NZ_CP017269.1 | Geosporobacter ferrireducens |
| 230 | 2726838 | 2727026 | + | NZ_CP035108.1 | Geovibrio thiophilus |
| 231 | 958723 | 958914 | + | NZ_CP066065.1 | Schaalia meyeri |
| 232 | 6137382 | 6137567 | - | NZ_CP020563.1 | Kitasatospora albolonga |
| 233 | 4721898 | 4722083 | - | NZ_CP029254.1 | Streptomyces spongiicola |
| 234 | 4976326 | 4976511 | - | NZ_CP029188.1 | Streptomyces tirandamycinicus |
| 235 | 5448150 | 5448335 | - | NZ_CP023693.1 | Streptomyces cinereoruber |
| 236 | 2705666 | 2705851 | + | NZ_CP011340.1 | Streptomyces pristinaespiralis |
| 237 | 6269978 | 6270163 | - | NZ_CP059991.1 | Streptomyces gardneri |
| 238 | 457448 | 457639 | + | NC_017934.1 | Mesotoga prima MesG1.Ag.4.2 |
| 239 | 1104458 | 1104649 | - | NZ_CP039292.1 | Actinomyces procaprae |
| 240 | 1383459 | 1383650 | - | NC_013205.1 | Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 |
| 241 | 3038123 | 3038308 | + | NZ_CP045643.1 | Streptomyces fagopyri |
| 242 | 1327923 | 1328108 | - | NZ_HF545616.1 | Ruminococcus bicirculans |
| 243 | 2257147 | 2257338 | + | NC_015588.1 | Isoptericola variabilis 225 |
| 244 | 1612385 | 1612576 | + | NZ_CP066802.1 | Actinomyces weissii |
| 245 | 1280310 | 1280501 | + | NZ_LR134357.1 | Actinomyces israelii |
| 246 | 1983993 | 1984184 | + | NC_013385.1 | Ammonifex degensii KC4 |
| 247 | 5986779 | 5986964 | - | NZ_CP070242.1 | Streptomyces californicus |
| 248 | 3961921 | 3962115 | - | NC_013510.1 | Thermomonospora curvata DSM 43183 |
| 249 | 5531952 | 5532137 | - | NZ_CP029196.1 | Streptomyces venezuelae |
| 250 | 6124404 | 6124589 | - | NZ_CP071839.1 | Streptomyces cyanogenus |
| 251 | 1462501 | 1462689 | + | NC_003869.1 | Caldanaerobacter subterraneus subsp. tengcongensis MB4 |
| 252 | 3217293 | 3217499 | + | NZ_CP036250.1 | Egicoccus halophilus |
| 253 | 1964666 | 1964854 | - | NC_016048.1 | Oscillibacter valericigenes Sjm18-20 |
| 254 | 1355991 | 1356179 | - | NZ_CP030777.1 | Faecalibacterium prausnitzii |
| 255 | 9321736 | 9321933 | + | NC_013131.1 | Catenulispora acidiphila DSM 44928 |
| 256 | 3440892 | 3441086 | + | NZ_AP024310.1 | Mycobacterium heckeshornense |
| 257 | 2631571 | 2631762 | + | NZ_CP045529.1 | Luteimicrobium xylanilyticum |
| 258 | 1735618 | 1735803 | - | NC_015635.1 | Microlunatus phosphovorus NM-1 |
| 259 | 2466617 | 2466808 | + | NC_013530.1 | Xylanimonas cellulosilytica DSM 15894 |
| 260 | 2190479 | 2190664 | + | NZ_CP044427.1 | Ornithinimicrobium pratense |
| 261 | 1548554 | 1548745 | - | NZ_CP022752.1 | Actinopolyspora erythraea |
| 262 | 871920 | 872108 | - | NZ_CP017237.1 | Moorella thermoacetica |
| 263 | 1778208 | 1778378 | - | NZ_LN879430.1 | Herbinix luporum |
| 264 | 1191438 | 1191632 | - | NZ_LT906453.1 | Dermatophilus congolensis |
| 265 | 3211677 | 3211868 | + | NZ_LR134355.1 | Mycolicibacterium chitae |
| 266 | 951721 | 951909 | - | NZ_CP036523.1 | Peptacetobacter hiranonis |
| 267 | 551850 | 552035 | + | NZ_CP019606.1 | Tessaracoccus aquimaris |
| 268 | 5855801 | 5855986 | - | NZ_CP013738.1 | Streptomyces globisporus C-1027 |
| 269 | 977811 | 978002 | + | NC_014150.1 | Brachyspira murdochii DSM 12563 |
| 270 | 245241 | 245432 | - | NZ_CP035495.1 | Xylanimonas allomyrinae |
| 271 | 3249090 | 3249281 | + | NZ_CP041694.1 | Cellulosimicrobium cellulans |
| 272 | 1044096 | 1044287 | - | NZ_CP051884.1 | Cellulomonas taurus |
| 273 | 5992393 | 5992578 | - | NZ_CP010407.1 | Streptomyces vietnamensis |
| 274 | 6235206 | 6235391 | - | NZ_CP023407.1 | Streptomyces fungicidicus |
| 275 | 5682576 | 5682761 | - | NZ_CP024957.1 | Streptomyces cavourensis |
| 276 | 5827510 | 5827695 | - | NZ_CP031194.1 | Streptomyces paludis |
| 277 | 2506165 | 2506356 | + | NC_009943.1 | Desulfococcus oleovorans Hxd3 |
| 278 | 294236 | 294415 | + | NZ_LT635475.1 | Ezakiella massiliensis |
| 279 | 390081 | 390275 | + | NZ_CP026999.1 | Bifidobacterium longum |
| 280 | 813682 | 813882 | - | NZ_CP007028.1 | Thermocrinis ruber |
| 281 | 1345495 | 1345716 | - | NZ_CP014334.1 | Fervidobacterium islandicum |
| 282 | 661590 | 661781 | + | NZ_CP008802.1 | Actinotignum schaalii |
| 283 | 2774949 | 2775134 | + | NZ_CP023688.1 | Streptomyces rimosus |
| 284 | 3046959 | 3047150 | + | NZ_CP042430.1 | Baekduia soli |
| 285 | 218864 | 219064 | - | NC_017161.1 | Hydrogenobacter thermophilus TK-6 |
| 286 | 241475 | 241669 | + | NZ_AP012322.1 | Bifidobacterium angulatum DSM 20098 = JCM 7096 |
| 287 | 1691783 | 1691971 | + | NZ_CP025286.1 | Ethanoligenens harbinense YUAN-3 |
| 288 | 284894 | 285091 | + | NZ_CP022544.1 | Bifidobacterium pseudolongum |
| 289 | 1431356 | 1431550 | - | NZ_AP012334.1 | Scardovia inopinata JCM 12537 |
| 290 | 2074614 | 2074811 | + | NC_014246.1 | Mobiluncus curtisii ATCC 43063 |
| 291 | 3937136 | 3937324 | - | NC_013739.1 | Conexibacter woesei DSM 14684 |
| 292 | 5736415 | 5736600 | - | NZ_CP072931.1 | Streptomyces auratus AGR0001 |
| 293 | 6040630 | 6040815 | - | NZ_CP019457.1 | Streptomyces lydicus |
| 294 | 6358051 | 6358236 | - | NZ_CP020569.1 | Streptomyces gilvosporeus |
| 295 | 6230737 | 6230922 | - | NZ_CP023691.1 | Streptomyces platensis |
| 296 | 6773280 | 6773465 | - | NZ_CP070326.1 | Streptomyces noursei |
| 297 | 325232 | 325426 | + | NZ_CP006018.1 | Bifidobacterium indicum LMG 11587 = DSM 20214 |
| 298 | 338485 | 338679 | + | NZ_CP007287.1 | Bifidobacterium coryneforme |
| 299 | 756705 | 756896 | - | NZ_CP048877.1 | Thermosulfuriphilus ammonigenes |
| 300 | 1774669 | 1774863 | + | NZ_CP011786.1 | Bifidobacterium actinocoloniiforme DSM 22766 |
| 301 | 2421723 | 2421878 | + | NZ_CP048436.1 | Flavonifractor plautii |
| 302 | 418681 | 418875 | + | NC_018720.1 | Bifidobacterium asteroides PRL2011 |
| 303 | 1590662 | 1590856 | + | NZ_CP062948.1 | Bifidobacterium lemurum |
| 304 | 952499 | 952696 | + | NZ_CP018044.1 | Bifidobacterium choerinum |
| 305 | 1980973 | 1981167 | - | NZ_CP006712.1 | Bifidobacterium breve JCM 7017 |
| 306 | 1285984 | 1286178 | - | NZ_CP062938.1 | Bifidobacterium eulemuris |
| 307 | 382962 | 383156 | + | NZ_AP012326.1 | Bifidobacterium dentium JCM 1195 = DSM 20436 |
| 308 | 2636747 | 2636941 | - | NZ_AP012331.1 | Bifidobacterium scardovii JCM 12489 = DSM 13734 |
| 309 | 3262324 | 3262509 | + | NC_014165.1 | Thermobispora bispora DSM 43833 |
| 310 | 9254051 | 9254236 | + | NZ_CP045572.1 | Nonomuraea nitratireducens |
| 311 | 1325255 | 1325443 | - | NC_014666.1 | Frankia inefficax |
| 312 | 1865621 | 1865806 | - | NZ_CP022753.1 | Nocardiopsis gilva YIM 90087 |
| 313 | 8816657 | 8816842 | + | NC_013595.1 | Streptosporangium roseum DSM 43021 |
| 314 | 5162815 | 5163000 | - | NZ_LR134501.1 | Nocardiopsis dassonvillei |
| 315 | 523176 | 523361 | - | NZ_CP031835.1 | Lactobacillus amylolyticus |
| 316 | 2220670 | 2220855 | + | NZ_CP060404.1 | Streptomyces buecherae |
| 317 | 7589652 | 7589837 | - | NZ_CP065050.1 | Streptomyces solisilvae |
| 318 | 4807239 | 4807424 | - | NZ_CP031264.1 | Streptacidiphilus bronchialis |
| 319 | 1984064 | 1984249 | + | NZ_CP023202.1 | Streptomyces xinghaiensis S187 |
| 320 | 4546196 | 4546381 | + | NC_016582.1 | Streptomyces bingchenggensis BCW-1 |
| 321 | 4714809 | 4714994 | - | NC_016111.1 | Streptomyces cattleya NRRL 8057 = DSM 46488 |
| 322 | 6294779 | 6294967 | + | NC_008278.1 | Frankia alni ACN14a |
| 323 | 1675827 | 1676021 | - | NZ_LT906483.1 | Mycolicibacterium thermoresistibile |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LS483468.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF13684.8 | 0.68 | 219 | 249 | opposite-strand | Dihydroxyacetone kinase family |
| 2 | PF02734.19 | 0.72 | 234 | 251.0 | opposite-strand | DAK2 domain |
| 3 | PF00270.31 | 0.85 | 275 | 1913 | opposite-strand | DEAD/DEAH box helicase |
| 4 | PF04851.17 | 0.85 | 273 | 1909 | opposite-strand | Type III restriction enzyme, res subunit |
| 5 | PF00586.26 | 0.64 | 206 | 1046.0 | opposite-strand | AIR synthase related protein, N-terminal domain |
++ More..