Result : EXP02539
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP02539 |
| NCBI Accession ID | |
| Organism | Roseburia,Clostridium |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | ATGGATATAACGATGATCGATTTTGAGGAAGAGATCCAGCGGTTTAAGCCCAGCCTTGAAGTGGAGGCAGTCAGCGACGCCATTATAAAAAGCGATCTGACGGATATGGCAGACATCATGATGGAGATCATGAAGGAGATAAAGGAAAAATAA |
| Sequence | MDITMIDFEEEIQRFKPSLEVEAVSDAIIKSDLTDMADIMMEIMKEIKEK |
| Source of smORF | Metagenomic Ribo-seq |
| Function | |
| Pubmed ID | 32601270 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 50 |
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| Conservation Analysis |
No. of Species: 14
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2847866 | 2848012 | + | NZ_CP022464.2 | Enterocloster bolteae |
| 2 | 1651608 | 1651748 | + | NC_014376.1 | [Clostridium] saccharolyticum WM1 |
| 3 | 1702896 | 1703036 | - | NZ_CP032364.1 | Lachnoanaerobaculum umeaense |
| 4 | 545216 | 545350 | - | NZ_CP036170.1 | [Clostridium] scindens ATCC 35704 |
| 5 | 737649 | 737792 | + | NZ_LR699011.1 | Roseburia hominis |
| 6 | 909172 | 909315 | + | NZ_LR027880.1 | Roseburia intestinalis L1-82 |
| 7 | 1861650 | 1861784 | + | NZ_LT990039.1 | Massilistercora timonensis |
| 8 | 2763938 | 2764072 | + | NZ_CP070062.1 | Coprococcus comes |
| 9 | 3079571 | 3079708 | + | NZ_CP027002.1 | [Ruminococcus] gnavus ATCC 29149 |
| 10 | 2639199 | 2639363 | - | NC_014387.1 | Butyrivibrio proteoclasticus B316 |
| 11 | 2158596 | 2158730 | - | NZ_LN879430.1 | Herbinix luporum |
| 12 | 1664609 | 1664752 | - | NC_012778.1 | [Eubacterium] eligens ATCC 27750 |
| 13 | 604694 | 604831 | + | NC_010001.1 | Lachnoclostridium phytofermentans ISDg |
| 14 | 4469316 | 4469456 | - | NZ_AP023367.1 | Anaerocolumna cellulosilytica |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR699011.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00133.24 | 0.79 | 11 | 2063 | same-strand | tRNA synthetases class I (I, L, M and V) |
| 2 | PF08264.15 | 0.79 | 11 | 2063 | same-strand | Anticodon-binding domain of tRNA ligase |
| 3 | PF10458.11 | 0.79 | 11 | 2063 | same-strand | Valyl tRNA synthetase tRNA binding arm |
| 4 | PF01740.23 | 0.86 | 12 | 1538.0 | same-strand | STAS domain |
| 5 | PF13466.8 | 0.79 | 11 | 1550 | same-strand | STAS domain |
| 6 | PF13581.8 | 0.86 | 12 | 1907.0 | same-strand | Histidine kinase-like ATPase domain |
| 7 | PF02518.28 | 0.86 | 12 | 1907.0 | same-strand | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
| 8 | PF04542.16 | 0.86 | 12 | 2351.5 | same-strand | Sigma-70 region 2 |
| 9 | PF04545.18 | 0.86 | 12 | 2351.5 | same-strand | Sigma-70, region 4 |
| 10 | PF07719.19 | 0.71 | 10 | 30.0 | same-strand | Tetratricopeptide repeat |
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