Result : EXP02538
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP02538 |
| NCBI Accession ID | |
| Organism | Enterococcus |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | ATGAGCAAGTATTGTCTATTTTTAATAGTTATCTATTATTTAACGGGAGGAAATAATTCTATGAGTCGCTTTTGTAAATTTGGAAAGTTACACGTTACTAAAGGGAATGTAGATAAATTATTAGGTATAGGGCACCTCTAA |
| Sequence | MSKYCLFLIVIYYLTGGNNSMSRFCKFGKLHVTKGNVDKLLGIGHL |
| Source of smORF | Metagenomic Ribo-seq |
| Function | |
| Pubmed ID | 32601270 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 46 |
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| Conservation Analysis |
No. of Species: 2
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 752069 | 752194 | + | NZ_AP019309.1 | Intestinibaculum porci |
| 2 | 735650 | 735775 | - | NZ_CP018888.1 | Amylolactobacillus amylophilus DSM 20533 = JCM 1125 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_AP019309.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00398.22 | 1.0 | 2 | -55.0 | same-strand | Ribosomal RNA adenine dimethylase |
| 2 | PF13649.8 | 1.0 | 2 | -55.0 | same-strand | Methyltransferase domain |
++ More..