* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_014376.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF03755.15
|
0.6
|
3
|
2805
|
same-strand
|
YicC-like family, N-terminal region
|
2
|
PF08340.13
|
0.6
|
3
|
2805
|
same-strand
|
Domain of unknown function (DUF1732)
|
3
|
PF00625.23
|
0.6
|
3
|
2129
|
same-strand
|
Guanylate kinase
|
4
|
PF01192.24
|
0.6
|
3
|
1772
|
same-strand
|
RNA polymerase Rpb6
|
5
|
PF00919.22
|
1.0
|
5
|
395
|
same-strand
|
Uncharacterized protein family UPF0004
|
6
|
PF04055.23
|
1.0
|
5
|
408.5
|
same-strand
|
Radical SAM superfamily
|
7
|
PF18693.3
|
1.0
|
5
|
395
|
same-strand
|
TRAM domain
|
8
|
PF01938.22
|
0.6
|
3
|
422
|
same-strand
|
TRAM domain
|
++ More..