Result : B5ELY7
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L29 |
| NCBI Accession ID | CP001132.1 |
| Organism | Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum ferrooxidans (ATCC 53993)) |
| Left | 475545 |
| Right | 475742 |
| Strand | + |
| Nucleotide Sequence | ATGAAAGCTCAGGCGGTTCAGAAACTTGATTTAGCGGGTTGTCAGGCTCAATTGCTGGTCCTTTTGGAGGAGCAATTCAGATTGCGGATGCAACATGCAACCGGGCAATTGGCCAAGACCTCCCGTTTACGCACTGTGCGTCGTGATATTGCGCGCGTACGGACAGCTATTACCGTGAAGAAGGAAGCGCACTCATGA |
| Sequence | MKAQAVQKLDLAGCQAQLLVLLEEQFRLRMQHATGQLAKTSRLRTVRRDIARVRTAITVKKEAHS |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl09943. Profile Description: N/A. This family represents the N-terminal region (approximately 8 residues) of the eukaryotic mitochondrial 39-S ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins (MRPs) are the counterparts of the cytoplasmic ribosomal proteins, in that they fulfil similar functions in protein biosynthesis. However, they are distinct in number, features and primary structure. |
| Pubmed ID | |
| Domain | CDD:415815 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | B5ELY7 |
| ORF Length (Amino Acid) | 65 |
++ More..
| Conservation Analysis |
No. of Species: 410
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1055539 | 1055736 | - | NZ_AP018795.1 | Acidithiobacillus ferridurans |
| 2 | 297031 | 297228 | + | NC_011761.1 | Acidithiobacillus ferrooxidans ATCC 23270 |
| 3 | 2680601 | 2680798 | - | NC_015942.1 | Acidithiobacillus ferrivorans SS3 |
| 4 | 388261 | 388455 | + | NZ_CP045571.1 | Acidithiobacillus thiooxidans ATCC 19377 |
| 5 | 1814225 | 1814422 | - | NZ_CP026328.2 | Acidithiobacillus caldus |
| 6 | 418005 | 418196 | + | NZ_CP014322.1 | Alteromonas addita |
| 7 | 3728538 | 3728729 | - | NC_015554.1 | Alteromonas naphthalenivorans |
| 8 | 421894 | 422085 | + | NC_016041.1 | Glaciecola nitratireducens FR1064 |
| 9 | 226556 | 226747 | + | NZ_CP069213.1 | Shewanella litorisediminis |
| 10 | 256398 | 256589 | + | NC_008700.1 | Shewanella amazonensis SB2B |
| 11 | 4415545 | 4415736 | + | NZ_CP020373.1 | Shewanella khirikhana |
| 12 | 4677727 | 4677918 | - | NZ_CP046378.1 | Shewanella algae |
| 13 | 3419826 | 3420017 | + | NZ_CP041783.1 | Shewanella donghaensis |
| 14 | 175062 | 175253 | + | NC_008345.1 | Shewanella frigidimarina NCIMB 400 |
| 15 | 427260 | 427451 | + | NZ_CP034015.1 | Shewanella livingstonensis |
| 16 | 4742284 | 4742475 | - | NZ_CP020472.1 | Shewanella japonica |
| 17 | 252589 | 252780 | + | NC_016901.1 | Shewanella baltica OS678 |
| 18 | 4434807 | 4434998 | - | NZ_CP041036.1 | Shewanella polaris |
| 19 | 303270 | 303461 | + | NZ_CP046670.1 | Alteromonas mediterranea |
| 20 | 2618803 | 2618994 | + | NZ_CP036200.1 | Shewanella maritima |
| 21 | 454278 | 454469 | + | NZ_CP008849.1 | Alteromonas australica |
| 22 | 5020391 | 5020582 | - | NC_010334.1 | Shewanella halifaxensis HAW-EB4 |
| 23 | 2095817 | 2096008 | + | NC_011566.1 | Shewanella piezotolerans WP3 |
| 24 | 5280155 | 5280346 | - | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 25 | 5651808 | 5651999 | - | NC_010506.1 | Shewanella woodyi ATCC 51908 |
| 26 | 3434365 | 3434556 | + | NZ_CP031961.1 | Pseudoalteromonas tunicata |
| 27 | 4013767 | 4013958 | - | NZ_CP037951.1 | Parashewanella tropica |
| 28 | 241847 | 242038 | + | NZ_CP022358.1 | Shewanella bicestrii |
| 29 | 172416 | 172607 | + | NZ_CP022272.1 | Shewanella marisflavi |
| 30 | 183724 | 183915 | + | NC_009092.1 | Shewanella loihica PV-4 |
| 31 | 1149607 | 1149798 | + | NZ_LR134313.1 | Neisseria canis |
| 32 | 519911 | 520102 | - | NZ_CP042382.1 | Pistricoccus aurantiacus |
| 33 | 200815 | 201006 | + | NC_007954.1 | Shewanella denitrificans OS217 |
| 34 | 4750272 | 4750463 | - | NC_014012.1 | Shewanella violacea DSS12 |
| 35 | 407573 | 407764 | + | NZ_CP014782.1 | Shewanella psychrophila |
| 36 | 214926 | 215117 | + | NC_009901.1 | Shewanella pealeana ATCC 700345 |
| 37 | 2702241 | 2702432 | - | NZ_CP016414.1 | Vibrio scophthalmi |
| 38 | 167294 | 167485 | + | NZ_CP011041.1 | Pseudoalteromonas tetraodonis |
| 39 | 172239 | 172430 | + | NZ_CP011030.1 | Pseudoalteromonas issachenkonii |
| 40 | 180566 | 180757 | + | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 41 | 248415 | 248606 | + | NZ_CP032090.1 | Pseudoalteromonas donghaensis |
| 42 | 183524 | 183715 | + | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 43 | 179328 | 179519 | + | NZ_CP011028.1 | Pseudoalteromonas espejiana DSM 9414 |
| 44 | 2171430 | 2171621 | + | NZ_CP046793.1 | Vibrio metschnikovii |
| 45 | 3540921 | 3541112 | - | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 46 | 2069530 | 2069721 | + | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 47 | 3393952 | 3394146 | - | NZ_AP014936.1 | Sulfurifustis variabilis |
| 48 | 3426311 | 3426502 | - | NZ_CP027523.1 | Pseudoalteromonas carrageenovora |
| 49 | 1586334 | 1586534 | - | NZ_CP039268.1 | Thermochromatium tepidum ATCC 43061 |
| 50 | 3932028 | 3932219 | - | NZ_CP065435.1 | Halomonas sp. SS10-MC5 |
| 51 | 4080497 | 4080685 | + | NZ_CP043473.1 | Chromobacterium paludis |
| 52 | 4510721 | 4510909 | - | NC_005085.1 | Chromobacterium violaceum ATCC 12472 |
| 53 | 2213140 | 2213328 | + | NZ_CP029495.1 | Chromobacterium phragmitis |
| 54 | 431300 | 431488 | + | NZ_AP019312.1 | Chromobacterium haemolyticum |
| 55 | 4576209 | 4576409 | + | NC_018012.1 | Thiocystis violascens DSM 198 |
| 56 | 491235 | 491426 | + | NZ_CP017689.1 | Thalassotalea crassostreae |
| 57 | 5303612 | 5303803 | - | NZ_CP037952.1 | Parashewanella spongiae |
| 58 | 160761 | 160952 | + | NC_007481.1 | Pseudoalteromonas translucida |
| 59 | 161633 | 161824 | + | NZ_CP011036.1 | Pseudoalteromonas nigrifaciens |
| 60 | 270171 | 270362 | + | NZ_CP071325.1 | Photobacterium ganghwense |
| 61 | 3678880 | 3679071 | - | NC_015559.1 | Marinomonas posidonica IVIA-Po-181 |
| 62 | 2361747 | 2361938 | + | NZ_CP019448.1 | Simonsiella muelleri ATCC 29453 |
| 63 | 818317 | 818514 | + | NZ_CP007031.1 | Marichromatium purpuratum 984 |
| 64 | 2620016 | 2620207 | - | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 65 | 124994 | 125185 | - | NC_013456.1 | Vibrio antiquarius |
| 66 | 2996135 | 2996326 | - | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 67 | 1175029 | 1175223 | - | NZ_CP023559.1 | Salinicola tamaricis |
| 68 | 1956731 | 1956922 | - | NZ_CP072524.1 | Neisseria sicca |
| 69 | 1575880 | 1576068 | + | NZ_CP039731.1 | Aquitalea aquatilis |
| 70 | 3959029 | 3959217 | - | NZ_CP047241.1 | Aquitalea denitrificans |
| 71 | 2324977 | 2325168 | - | NZ_CP031700.1 | Neisseria zalophi |
| 72 | 580977 | 581168 | + | NZ_AP021888.1 | Thiosulfativibrio zosterae |
| 73 | 587711 | 587902 | + | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 74 | 983793 | 983984 | - | NZ_CP048812.1 | Halomonas socia |
| 75 | 1101074 | 1101265 | + | NZ_CP031699.1 | Neisseria animalis |
| 76 | 2212930 | 2213118 | + | NZ_CP058952.1 | Chitinibacter fontanus |
| 77 | 3639466 | 3639657 | - | NZ_CP021435.1 | Halomonas beimenensis |
| 78 | 288938 | 289129 | + | NC_014532.2 | Halomonas elongata DSM 2581 |
| 79 | 132456 | 132647 | + | NZ_CP014226.1 | Halomonas chromatireducens |
| 80 | 289747 | 289941 | - | NZ_CP059563.1 | Conchiformibius steedae |
| 81 | 2675335 | 2675535 | - | NC_013851.1 | Allochromatium vinosum DSM 180 |
| 82 | 4307903 | 4308094 | - | NZ_CP061081.1 | Marinomonas arctica |
| 83 | 1266728 | 1266919 | + | NZ_CP046027.1 | Neisseria brasiliensis |
| 84 | 1774564 | 1774755 | - | NZ_CP070273.1 | Marinomonas foliarum |
| 85 | 1967510 | 1967701 | + | NZ_CP018139.1 | Halomonas aestuarii |
| 86 | 936291 | 936482 | - | NZ_CP031325.1 | Neisseria polysaccharea |
| 87 | 1726724 | 1726915 | - | NZ_CP021520.1 | Neisseria meningitidis |
| 88 | 1055113 | 1055304 | + | NZ_CP012028.1 | Neisseria gonorrhoeae |
| 89 | 449720 | 449896 | + | NZ_CP035033.1 | Hydrogenovibrio thermophilus |
| 90 | 2466883 | 2467077 | + | NC_013960.1 | Nitrosococcus halophilus Nc 4 |
| 91 | 1695263 | 1695454 | + | NZ_LS483369.1 | Neisseria cinerea |
| 92 | 128364 | 128555 | - | NZ_HG916765.1 | Castellaniella defragrans 65Phen |
| 93 | 1910420 | 1910611 | - | NZ_CP031253.1 | Neisseria lactamica |
| 94 | 972016 | 972207 | - | NZ_CP014056.2 | Grimontia hollisae |
| 95 | 3569827 | 3570015 | + | NZ_CP017707.1 | Chromobacterium vaccinii |
| 96 | 330891 | 331082 | + | NZ_AP018933.1 | Zymobacter palmae |
| 97 | 1790538 | 1790729 | - | NZ_CP039887.1 | Neisseria subflava |
| 98 | 1956412 | 1956603 | + | NZ_CP039886.1 | Neisseria flavescens |
| 99 | 3824373 | 3824564 | - | NZ_CP012621.1 | Zobellella denitrificans |
| 100 | 164642 | 164833 | + | NZ_CP009238.1 | Basilea psittacipulmonis DSM 24701 |
| 101 | 1927419 | 1927610 | - | NZ_LR134516.1 | Neisseria animaloris |
| 102 | 5207456 | 5207647 | - | NC_010170.1 | Bordetella petrii |
| 103 | 35499 | 35690 | + | NZ_CP043146.1 | Bordetella holmesii |
| 104 | 3283999 | 3284190 | - | NC_018518.1 | Bordetella pertussis 18323 |
| 105 | 4122145 | 4122336 | + | NZ_AP019378.1 | Bordetella parapertussis |
| 106 | 5133382 | 5133573 | - | NZ_LR134326.1 | Bordetella bronchiseptica |
| 107 | 110811 | 111008 | + | NZ_CP038018.1 | Eikenella exigua |
| 108 | 3028214 | 3028405 | - | NZ_CP043420.1 | Kushneria phosphatilytica |
| 109 | 5886803 | 5886994 | - | NZ_CP016171.1 | Bordetella bronchialis |
| 110 | 6344132 | 6344323 | - | NZ_CP038034.1 | Achromobacter insolitus |
| 111 | 2457344 | 2457535 | - | NZ_LR134302.1 | Achromobacter spanius |
| 112 | 4914107 | 4914298 | - | NZ_CP053986.1 | Achromobacter denitrificans |
| 113 | 1220634 | 1220831 | + | NZ_LT906482.1 | Eikenella corrodens |
| 114 | 2042885 | 2043076 | + | NZ_CP030753.1 | Actinobacillus pleuropneumoniae |
| 115 | 1917916 | 1918107 | - | NZ_CP007715.1 | Actinobacillus equuli subsp. equuli |
| 116 | 1912618 | 1912809 | - | NZ_CP009159.1 | Actinobacillus suis ATCC 33415 |
| 117 | 522389 | 522586 | + | NC_008340.1 | Alkalilimnicola ehrlichii MLHE-1 |
| 118 | 2682182 | 2682373 | + | NZ_CP060414.1 | Neisseria musculi |
| 119 | 4266617 | 4266808 | + | NZ_CP046904.1 | Massilia flava |
| 120 | 588214 | 588405 | + | NZ_CP015029.1 | Frederiksenia canicola |
| 121 | 2014082 | 2014273 | + | NZ_LT906448.1 | Pasteurella dagmatis |
| 122 | 36250 | 36441 | + | NC_010645.1 | Bordetella avium 197N |
| 123 | 2496812 | 2497003 | - | NZ_LT906434.1 | Neisseria zoodegmatis |
| 124 | 1447737 | 1447931 | - | NZ_CP011257.1 | Ralstonia mannitolilytica |
| 125 | 1574194 | 1574388 | - | NZ_CP012943.1 | Ralstonia solanacearum |
| 126 | 3376088 | 3376282 | - | NZ_CP016022.1 | Ralstonia insidiosa |
| 127 | 205832 | 206023 | - | NZ_CP009610.1 | Haemophilus influenzae |
| 128 | 301461 | 301652 | - | NZ_LS483458.1 | Haemophilus haemolyticus |
| 129 | 216126 | 216317 | - | NZ_LS483429.1 | Haemophilus aegyptius |
| 130 | 306492 | 306683 | + | NZ_CP040021.1 | Salinivibrio kushneri |
| 131 | 1365085 | 1365276 | + | NZ_LR134533.1 | Neisseria weaveri |
| 132 | 610734 | 610925 | + | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 133 | 570636 | 570827 | + | NZ_CP059564.1 | Alysiella filiformis |
| 134 | 919006 | 919197 | - | NZ_CP022278.1 | Neisseria chenwenguii |
| 135 | 4425406 | 4425597 | - | NZ_CP016440.1 | Bordetella pseudohinzii |
| 136 | 1564576 | 1564767 | - | NZ_CP021395.1 | Bordetella hinzii |
| 137 | 2986162 | 2986353 | - | NZ_CP044060.1 | Aeromonas veronii |
| 138 | 3242475 | 3242666 | - | NZ_CP065745.1 | Aeromonas allosaccharophila |
| 139 | 4452966 | 4453157 | - | NZ_AP022188.1 | Aeromonas media |
| 140 | 331747 | 331938 | + | NZ_CP050851.1 | Aeromonas hydrophila |
| 141 | 761757 | 761945 | - | NZ_CP021323.1 | Kushneria konosiri |
| 142 | 2537556 | 2537744 | + | NZ_CP021358.1 | Kushneria marisflavi |
| 143 | 410243 | 410434 | - | NZ_LT906463.1 | Haemophilus pittmaniae |
| 144 | 3589017 | 3589208 | - | NZ_CP040449.1 | Aeromonas simiae |
| 145 | 255866 | 256057 | + | NC_015276.1 | Marinomonas mediterranea MMB-1 |
| 146 | 5489266 | 5489460 | - | NZ_CP010310.2 | Pandoraea pulmonicola |
| 147 | 3533083 | 3533277 | - | NZ_CP032519.1 | Cupriavidus oxalaticus |
| 148 | 6039440 | 6039631 | - | NZ_CP028324.1 | Massilia armeniaca |
| 149 | 3090222 | 3090413 | - | NZ_CP028901.1 | Algicoccus marinus |
| 150 | 3746377 | 3746571 | - | NZ_CP039287.1 | Cupriavidus necator H16 |
| 151 | 168231 | 168422 | + | NZ_CP006954.1 | Bibersteinia trehalosi USDA-ARS-USMARC-188 |
| 152 | 1021521 | 1021712 | + | NZ_LR134510.1 | Actinobacillus delphinicola |
| 153 | 5371580 | 5371774 | - | NZ_LT906435.1 | Pandoraea sputorum |
| 154 | 4853135 | 4853329 | - | NZ_CP011807.3 | Pandoraea faecigallinarum |
| 155 | 5015147 | 5015341 | - | NC_023018.2 | Pandoraea pnomenusa |
| 156 | 5250145 | 5250339 | - | NZ_CP010897.2 | Pandoraea vervacti |
| 157 | 19304 | 19495 | + | NZ_CP016180.1 | Pasteurella skyensis |
| 158 | 111909 | 112103 | - | NZ_CP072844.1 | Psychrosphaera aestuarii |
| 159 | 137845 | 138039 | + | NZ_CP011930.1 | Herbaspirillum seropedicae |
| 160 | 155196 | 155390 | + | NZ_CP013737.1 | Herbaspirillum rubrisubalbicans M1 |
| 161 | 177117 | 177311 | + | NZ_CP037993.1 | Herbaspirillum huttiense |
| 162 | 360561 | 360755 | + | NZ_CP013481.2 | Pandoraea apista |
| 163 | 1153136 | 1153330 | + | NZ_CP047385.1 | Pandoraea fibrosis |
| 164 | 3146750 | 3146944 | + | NZ_CP017561.1 | Paraburkholderia sprentiae WSM5005 |
| 165 | 6137520 | 6137711 | - | NZ_CP014870.1 | Pseudomonas silesiensis |
| 166 | 1584603 | 1584794 | - | NC_016043.1 | Taylorella asinigenitalis MCE3 |
| 167 | 697720 | 697911 | + | NZ_CP029206.1 | Actinobacillus porcitonsillarum |
| 168 | 3304652 | 3304846 | - | NZ_CP043869.1 | Neptunomonas concharum |
| 169 | 2096378 | 2096569 | - | NZ_CP016605.1 | Bisgaardia hudsonensis |
| 170 | 1610165 | 1610356 | - | NZ_CP021060.1 | Taylorella equigenitalis |
| 171 | 6025854 | 6026045 | - | NZ_CP007142.1 | Gynuella sunshinyii YC6258 |
| 172 | 1088540 | 1088731 | + | NZ_CP028926.1 | Pasteurella multocida |
| 173 | 3176423 | 3176617 | - | NC_010622.1 | Paraburkholderia phymatum STM815 |
| 174 | 3293070 | 3293264 | - | NZ_CP026111.1 | Paraburkholderia terrae |
| 175 | 2389419 | 2389613 | + | NZ_CP015958.1 | Paraburkholderia caribensis |
| 176 | 3688199 | 3688393 | - | NZ_CP024934.1 | Paraburkholderia graminis |
| 177 | 2995600 | 2995794 | + | NZ_CP066075.1 | Paraburkholderia ginsengisoli |
| 178 | 3705968 | 3706162 | - | NZ_CP024941.1 | Paraburkholderia terricola |
| 179 | 1494446 | 1494640 | + | NZ_CP022989.1 | Paraburkholderia aromaticivorans |
| 180 | 4070346 | 4070540 | - | NC_010681.1 | Paraburkholderia phytofirmans PsJN |
| 181 | 1809921 | 1810115 | - | NZ_CP031467.1 | Paraburkholderia caffeinilytica |
| 182 | 4509729 | 4509923 | - | NC_007951.1 | Paraburkholderia xenovorans LB400 |
| 183 | 4255203 | 4255394 | - | NZ_CP050150.1 | Hafnia alvei |
| 184 | 2799282 | 2799476 | - | NZ_CP029640.1 | Paraburkholderia dokdonella |
| 185 | 5412894 | 5413085 | + | NZ_CP040017.1 | Massilia umbonata |
| 186 | 6464271 | 6464462 | - | NZ_CP036401.1 | Massilia albidiflava |
| 187 | 2675003 | 2675197 | - | NC_021287.1 | Caballeronia insecticola |
| 188 | 775252 | 775446 | + | NC_013959.1 | Sideroxydans lithotrophicus ES-1 |
| 189 | 250661 | 250855 | + | NZ_CP011568.3 | Pandoraea thiooxydans |
| 190 | 5751208 | 5751399 | - | NZ_CP016172.1 | Bordetella flabilis |
| 191 | 2056119 | 2056310 | - | NZ_CP006944.1 | Mannheimia varigena USDA-ARS-USMARC-1312 |
| 192 | 334585 | 334776 | - | NZ_CP046531.1 | Mannheimia ovis |
| 193 | 538683 | 538874 | + | NZ_CP061280.1 | Mannheimia bovis |
| 194 | 363087 | 363278 | - | NZ_CP055305.1 | Mannheimia pernigra |
| 195 | 1593665 | 1593856 | + | NC_011852.1 | Glaesserella parasuis SH0165 |
| 196 | 2548405 | 2548596 | - | NC_021883.1 | Mannheimia haemolytica USMARC_2286 |
| 197 | 329701 | 329892 | + | NZ_CP013235.1 | Collimonas arenae |
| 198 | 442096 | 442287 | + | NZ_CP013236.1 | Collimonas pratensis |
| 199 | 716242 | 716433 | + | NZ_CP013232.1 | Collimonas fungivorans |
| 200 | 1967454 | 1967645 | - | NZ_CP016604.1 | Otariodibacter oris |
| 201 | 616776 | 616967 | + | NZ_LS483443.1 | Aggregatibacter segnis ATCC 33393 |
| 202 | 3531856 | 3532050 | - | NZ_CP068285.1 | Ralstonia syzygii subsp. celebesensis |
| 203 | 7035917 | 7036114 | - | NZ_CP039690.1 | Phreatobacter stygius |
| 204 | 130896 | 131087 | - | NZ_LR134167.1 | Avibacterium volantium |
| 205 | 2377980 | 2378156 | - | NZ_CP007446.1 | Snodgrassella alvi wkB2 |
| 206 | 644141 | 644347 | - | NZ_CP024422.1 | Paracoccus yeei |
| 207 | 1121541 | 1121747 | - | NZ_CP030239.1 | Paracoccus mutanolyticus |
| 208 | 369505 | 369696 | + | NZ_CP051183.1 | Bermanella marisrubri |
| 209 | 87788 | 87979 | + | NZ_CP018804.1 | Histophilus somni |
| 210 | 2430325 | 2430516 | + | NZ_CP013119.1 | Alcaligenes faecalis |
| 211 | 1797435 | 1797641 | - | NZ_CP045072.1 | Paracoccus kondratievae |
| 212 | 4331495 | 4331689 | - | NZ_CP017754.1 | Cupriavidus malaysiensis |
| 213 | 1574762 | 1574953 | - | NZ_CP047165.1 | Pelistega ratti |
| 214 | 963863 | 964057 | + | NC_014722.1 | Mycetohabitans rhizoxinica HKI 454 |
| 215 | 1454312 | 1454509 | - | NZ_CP054836.1 | Oricola thermophila |
| 216 | 5639164 | 5639355 | - | NZ_CP048878.1 | Spartinivicinus ruber |
| 217 | 5308628 | 5308819 | - | NZ_HG322949.1 | Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 |
| 218 | 4624657 | 4624848 | + | NZ_CP041185.1 | Janthinobacterium tructae |
| 219 | 724908 | 725099 | + | NZ_CP048832.1 | Janthinobacterium lividum |
| 220 | 4114853 | 4115047 | - | NZ_CP062803.1 | Cupriavidus basilensis |
| 221 | 3609109 | 3609300 | - | NC_020888.1 | Thalassolituus oleivorans MIL-1 |
| 222 | 1001639 | 1001833 | + | NZ_CP009727.1 | Burkholderia mallei |
| 223 | 2502581 | 2502775 | + | NZ_CP035900.1 | Burkholderia glumae |
| 224 | 3497022 | 3497216 | - | NC_007651.1 | Burkholderia thailandensis E264 |
| 225 | 2028071 | 2028265 | + | NZ_CP008781.1 | Burkholderia pseudomallei |
| 226 | 2004555 | 2004749 | + | NZ_CP009555.1 | Burkholderia oklahomensis C6786 |
| 227 | 305465 | 305659 | + | NZ_CP002580.1 | Burkholderia plantarii |
| 228 | 1192459 | 1192650 | - | NZ_LR134327.1 | Aggregatibacter aphrophilus ATCC 33389 |
| 229 | 2550717 | 2550920 | + | NZ_CP032509.1 | Georhizobium profundi |
| 230 | 108042 | 108233 | + | NZ_CP015581.1 | Tatumella citrea |
| 231 | 5799967 | 5800161 | - | NZ_CP013480.3 | Pandoraea norimbergensis |
| 232 | 3843633 | 3843824 | - | NZ_CP054301.1 | Marinomonas primoryensis |
| 233 | 2989392 | 2989586 | - | NZ_CP009795.1 | Burkholderia dolosa AU0158 |
| 234 | 422968 | 423162 | + | NZ_CP009832.1 | Burkholderia multivorans ATCC BAA-247 |
| 235 | 335798 | 335992 | + | NZ_CP013398.1 | Burkholderia seminalis |
| 236 | 320937 | 321131 | + | NZ_CP013401.1 | Burkholderia metallica |
| 237 | 1622762 | 1622956 | + | NZ_CP011503.1 | Burkholderia pyrrocinia |
| 238 | 333289 | 333483 | + | NZ_CP013450.1 | Burkholderia cenocepacia |
| 239 | 329314 | 329508 | + | NZ_CP045235.1 | Burkholderia cepacia |
| 240 | 326664 | 326858 | + | NC_007510.1 | Burkholderia lata |
| 241 | 415690 | 415884 | + | NZ_CP013459.1 | Burkholderia stagnalis |
| 242 | 349918 | 350112 | + | NZ_CP020737.1 | Paraburkholderia acidophila |
| 243 | 427712 | 427906 | + | NZ_CP013414.1 | Burkholderia ubonensis |
| 244 | 2885966 | 2886160 | - | NZ_CP046909.1 | Paraburkholderia acidiphila |
| 245 | 2912910 | 2913104 | - | NZ_CP046913.1 | Paraburkholderia acidisoli |
| 246 | 1586406 | 1586606 | + | NZ_CP006877.1 | Rhizobium gallicum bv. gallicum R602sp |
| 247 | 179637 | 179831 | + | NZ_CP054624.1 | Cupriavidus gilardii |
| 248 | 3412448 | 3412642 | - | NZ_CP018845.1 | Herbaspirillum robiniae |
| 249 | 762972 | 763163 | + | NZ_CP023422.1 | Janthinobacterium svalbardensis |
| 250 | 3511207 | 3511398 | - | NZ_CP036422.1 | Halioglobus maricola |
| 251 | 2868068 | 2868268 | - | NZ_CP049250.1 | Rhizobium rhizoryzae |
| 252 | 233623 | 233814 | + | NZ_CP061941.1 | Marinomonas algicola |
| 253 | 3307349 | 3307549 | - | NZ_CP018171.1 | Mesorhizobium oceanicum |
| 254 | 950391 | 950582 | + | NZ_CP024608.1 | Massilia violaceinigra |
| 255 | 1924873 | 1925073 | - | NZ_CP017940.1 | Phyllobacterium zundukense |
| 256 | 2760588 | 2760794 | - | NZ_LN832559.1 | Paracoccus aminovorans |
| 257 | 3261328 | 3261528 | - | NZ_CP049241.1 | Rhizobium pseudoryzae |
| 258 | 3659987 | 3660187 | - | NZ_AP014946.1 | Variibacter gotjawalensis |
| 259 | 1741313 | 1741513 | + | NZ_CP071612.1 | Rhizobium bangladeshense |
| 260 | 1535010 | 1535210 | - | NZ_CP053856.1 | Rhizobium pusense |
| 261 | 2378718 | 2378918 | - | NZ_AP014648.1 | Methyloceanibacter caenitepidi |
| 262 | 639197 | 639391 | + | NZ_CP025682.1 | Azoarcus pumilus |
| 263 | 2444534 | 2444770 | - | NZ_CP050139.1 | Komagataeibacter rhaeticus |
| 264 | 1627079 | 1627279 | - | NZ_CP061003.1 | Agrobacterium tumefaciens |
| 265 | 72410 | 72610 | + | NZ_CP048632.1 | Rhizobium oryzihabitans |
| 266 | 2956380 | 2956574 | - | NZ_CP049134.1 | Paraburkholderia tropica |
| 267 | 824032 | 824223 | + | NZ_CP014158.1 | Pseudomonas citronellolis |
| 268 | 1194749 | 1194949 | - | NC_010103.1 | Brucella canis ATCC 23365 |
| 269 | 1195860 | 1196060 | - | NC_004310.3 | Brucella suis 1330 |
| 270 | 1201648 | 1201848 | - | NC_009505.1 | Brucella ovis ATCC 25840 |
| 271 | 1202175 | 1202375 | - | NC_013119.1 | Brucella microti CCM 4915 |
| 272 | 791956 | 792156 | + | NC_003317.1 | Brucella melitensis bv. 1 str. 16M |
| 273 | 791946 | 792146 | + | NC_022905.1 | Brucella ceti TE10759-12 |
| 274 | 1211118 | 1211318 | - | NC_007618.1 | Brucella abortus 2308 |
| 275 | 1510721 | 1510921 | + | NZ_LT605585.1 | Brucella inopinata |
| 276 | 1525667 | 1525867 | + | NC_020059.1 | Rhizobium tropici CIAT 899 |
| 277 | 4434340 | 4434531 | + | NZ_CP019038.1 | Massilia putida |
| 278 | 3617834 | 3618034 | + | NZ_CP071454.1 | Rhizobium lentis |
| 279 | 1344915 | 1345109 | + | NC_012796.1 | Desulfovibrio magneticus RS-1 |
| 280 | 1440165 | 1440359 | - | NZ_CP024610.1 | Lactobacillus terrae |
| 281 | 1391111 | 1391302 | - | NZ_CP034464.1 | Undibacterium parvum |
| 282 | 1483379 | 1483579 | + | NC_020528.1 | Sinorhizobium meliloti 2011 |
| 283 | 1274294 | 1274491 | + | NZ_CP027668.1 | Phreatobacter cathodiphilus |
| 284 | 1604196 | 1604387 | - | NZ_CP015031.1 | Basfia succiniciproducens |
| 285 | 2001829 | 2002020 | - | NC_006300.1 | [Mannheimia] succiniciproducens MBEL55E |
| 286 | 1737518 | 1737718 | + | NZ_CP020906.1 | Rhizobium etli |
| 287 | 1785827 | 1786027 | + | NZ_CP013500.1 | Rhizobium esperanzae |
| 288 | 1786816 | 1787016 | + | NZ_CP071604.1 | Rhizobium binae |
| 289 | 1781814 | 1782014 | + | NZ_CP013532.1 | Rhizobium phaseoli |
| 290 | 3391937 | 3392131 | - | NZ_CP026538.1 | Desulfovibrio carbinolicus |
| 291 | 3004364 | 3004555 | + | NZ_CP022987.1 | Pusillimonas thiosulfatoxidans |
| 292 | 1271017 | 1271217 | + | NZ_HG938353.1 | Neorhizobium galegae bv. orientalis str. HAMBI 540 |
| 293 | 2048337 | 2048528 | - | NC_006512.1 | Idiomarina loihiensis L2TR |
| 294 | 2458271 | 2458465 | - | NZ_CP014646.1 | Thauera humireducens |
| 295 | 1081875 | 1082075 | - | NZ_LR134527.1 | Bartonella elizabethae |
| 296 | 1430678 | 1430878 | - | NZ_CP064063.1 | Brucella anthropi |
| 297 | 1150605 | 1150805 | + | NZ_CP023067.1 | Ensifer sojae CCBAU 05684 |
| 298 | 1106031 | 1106231 | + | NZ_CP034909.1 | Ensifer alkalisoli |
| 299 | 1784304 | 1784504 | + | NZ_CP032694.1 | Rhizobium jaguaris |
| 300 | 1214668 | 1214904 | - | NC_016027.1 | Komagataeibacter medellinensis NBRC 3288 |
| 301 | 1167534 | 1167734 | + | NZ_CP015880.1 | Ensifer adhaerens |
| 302 | 5217577 | 5217771 | - | NZ_CP011253.3 | Pandoraea oxalativorans |
| 303 | 454289 | 454483 | + | NZ_CP017996.1 | Companilactobacillus crustorum |
| 304 | 1711651 | 1711845 | - | NZ_CP049366.1 | Companilactobacillus pabuli |
| 305 | 2095473 | 2095667 | - | NZ_CP017702.1 | Companilactobacillus farciminis KCTC 3681 = DSM 20184 |
| 306 | 2021059 | 2021253 | - | NZ_CP040736.1 | Companilactobacillus futsaii |
| 307 | 448459 | 448653 | + | NZ_CP012559.1 | Companilactobacillus heilongjiangensis |
| 308 | 2018755 | 2018955 | + | NZ_CP071678.1 | Rhizobium ruizarguesonis |
| 309 | 1536994 | 1537194 | + | NZ_CP041238.1 | Ensifer mexicanus |
| 310 | 1479849 | 1480049 | - | NC_012846.1 | Bartonella grahamii as4aup |
| 311 | 2629323 | 2629523 | - | NZ_CP054027.1 | Rhizobium hidalgonense |
| 312 | 1352245 | 1352445 | + | NZ_CP034998.1 | Rhizobium acidisoli |
| 313 | 782158 | 782358 | - | NZ_CP054021.1 | Rhizobium indicum |
| 314 | 1930469 | 1930669 | - | NZ_CP059896.1 | Ciceribacter thiooxidans |
| 315 | 1504223 | 1504423 | + | NZ_CP013107.1 | Sinorhizobium americanum |
| 316 | 1290810 | 1291010 | + | NZ_CP029451.1 | Sinorhizobium fredii CCBAU 25509 |
| 317 | 1295844 | 1296044 | - | NZ_CP022604.1 | [Ochrobactrum] quorumnocens |
| 318 | 1361428 | 1361664 | - | NZ_CP036404.1 | Komagataeibacter saccharivorans |
| 319 | 4568162 | 4568356 | - | NZ_CP003915.1 | Advenella mimigardefordensis DPN7 |
| 320 | 3085026 | 3085220 | - | NZ_CP022579.1 | Oryzomicrobium terrae |
| 321 | 1536143 | 1536343 | + | NZ_LR723670.1 | Pseudorhizobium flavum |
| 322 | 1446033 | 1446233 | + | NZ_FO082820.1 | Pseudorhizobium banfieldiae |
| 323 | 4221699 | 4221893 | - | NC_017964.1 | Advenella kashmirensis WT001 |
| 324 | 176992 | 177156 | + | NZ_CP060714.1 | Diaphorobacter ruginosibacter |
| 325 | 2784775 | 2784966 | + | NZ_LT671418.1 | Herminiimonas arsenitoxidans |
| 326 | 58492 | 58683 | - | NZ_CP018787.1 | Oxalobacter formigenes |
| 327 | 3868892 | 3869089 | - | NZ_CP054840.1 | Acidovorax antarcticus |
| 328 | 387886 | 388071 | - | NZ_AP022345.1 | Fluviibacter phosphoraccumulans |
| 329 | 2508250 | 2508444 | - | NZ_CP068055.1 | Sutterella wadsworthensis |
| 330 | 611350 | 611541 | + | NC_012560.1 | Azotobacter vinelandii DJ |
| 331 | 1199851 | 1200042 | + | NZ_CP059565.1 | Neisseria wadsworthii |
| 332 | 1281334 | 1281534 | - | NZ_LR134529.1 | Bartonella vinsonii |
| 333 | 2069078 | 2069287 | - | NC_007503.1 | Carboxydothermus hydrogenoformans Z-2901 |
| 334 | 1787332 | 1787523 | + | NZ_CP065150.1 | Vibrio kanaloae |
| 335 | 2975575 | 2975766 | - | NC_011753.2 | Vibrio atlanticus |
| 336 | 312625 | 312816 | + | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 337 | 689833 | 690033 | + | NC_008783.1 | Bartonella bacilliformis KC583 |
| 338 | 715989 | 716189 | + | NC_008783.1 | Bartonella bacilliformis KC583 |
| 339 | 1858664 | 1858852 | - | NZ_CP041730.1 | Chitinimonas arctica |
| 340 | 2278126 | 2278317 | - | NZ_CP035688.1 | Vibrio metoecus |
| 341 | 2620372 | 2620563 | - | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 342 | 3096292 | 3096483 | + | NZ_CP014035.2 | Vibrio fluvialis |
| 343 | 282760 | 282951 | + | NZ_AP018689.1 | Vibrio aphrogenes |
| 344 | 317638 | 317829 | + | NZ_AP018685.1 | Vibrio rumoiensis |
| 345 | 1026587 | 1026823 | - | NZ_CP019875.1 | Komagataeibacter nataicola |
| 346 | 347311 | 347502 | + | NZ_CP047475.1 | Vibrio astriarenae |
| 347 | 2491591 | 2491788 | - | NZ_CP060783.1 | Diaphorobacter aerolatus |
| 348 | 2452561 | 2452752 | + | NC_016629.1 | Desulfocurvibacter africanus subsp. africanus str. Walvis Bay |
| 349 | 2716930 | 2717121 | - | NZ_AP019651.1 | Vibrio taketomensis |
| 350 | 2853393 | 2853584 | - | NZ_CP032093.1 | Vibrio alfacsensis |
| 351 | 3184255 | 3184446 | + | NZ_AP019657.1 | Vibrio ponticus |
| 352 | 408956 | 409147 | + | NZ_CP044069.1 | Vibrio vulnificus |
| 353 | 280258 | 280449 | + | NZ_CP030788.1 | Vibrio campbellii |
| 354 | 255227 | 255418 | + | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 355 | 2822526 | 2822717 | - | NZ_CP018312.1 | Vibrio rotiferianus |
| 356 | 1543835 | 1544026 | - | NZ_CP019959.1 | Vibrio owensii |
| 357 | 487958 | 488149 | + | NZ_CP009467.1 | Vibrio harveyi |
| 358 | 1956313 | 1956504 | - | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 359 | 2084221 | 2084415 | - | NZ_CP059560.1 | Aromatoleum petrolei |
| 360 | 313416 | 313607 | + | NC_014541.1 | Ferrimonas balearica DSM 9799 |
| 361 | 3776328 | 3776519 | + | NZ_CP051180.1 | Ferrimonas lipolytica |
| 362 | 4496811 | 4497011 | - | NZ_CP006837.1 | Lysinibacillus varians |
| 363 | 247718 | 247918 | + | NZ_CP019980.1 | Lysinibacillus sphaericus |
| 364 | 203905 | 204105 | + | NZ_CP010820.1 | Lysinibacillus fusiformis |
| 365 | 2851611 | 2851802 | - | NZ_CP045350.1 | Vibrio aquimaris |
| 366 | 483975 | 484166 | + | NC_007963.1 | Chromohalobacter salexigens DSM 3043 |
| 367 | 4806682 | 4806873 | - | NZ_LT906479.1 | Serratia ficaria |
| 368 | 4032625 | 4032816 | + | NZ_CP067057.1 | Rahnella aceris |
| 369 | 1115439 | 1115630 | - | NZ_CP065640.1 | Serratia rubidaea |
| 370 | 2903104 | 2903295 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 371 | 340192 | 340383 | + | NZ_CP071320.1 | Serratia ureilytica |
| 372 | 4070503 | 4070694 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 373 | 4842405 | 4842596 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 374 | 368050 | 368241 | + | NC_011312.1 | Aliivibrio salmonicida LFI1238 |
| 375 | 4096903 | 4097094 | - | NZ_CP048796.1 | Providencia vermicola |
| 376 | 974058 | 974249 | + | NZ_CP029736.1 | Providencia rettgeri |
| 377 | 3564663 | 3564854 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 378 | 4872761 | 4872952 | - | NC_012962.1 | Photorhabdus asymbiotica |
| 379 | 1682002 | 1682193 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 380 | 209708 | 209899 | + | NZ_AP022843.1 | Halomonas hydrothermalis |
| 381 | 372941 | 373132 | + | NZ_CP013106.1 | Halomonas huangheensis |
| 382 | 1193918 | 1194109 | + | NZ_CP023536.1 | Providencia alcalifaciens |
| 383 | 215277 | 215468 | + | NZ_CP048602.1 | Halomonas piezotolerans |
| 384 | 4893153 | 4893344 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 385 | 4937124 | 4937315 | - | NZ_LR134494.1 | Serratia quinivorans |
| 386 | 5009178 | 5009369 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 387 | 311737 | 311928 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 388 | 1264308 | 1264499 | - | NZ_CP007230.1 | Yersinia similis |
| 389 | 3561515 | 3561706 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 390 | 1315241 | 1315432 | - | NZ_CP011254.1 | Serratia fonticola |
| 391 | 1386174 | 1386365 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 392 | 209169 | 209360 | + | NZ_CP065135.1 | Halomonas venusta |
| 393 | 702038 | 702229 | - | NZ_CP059082.1 | Halomonas titanicae |
| 394 | 3486478 | 3486669 | - | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 395 | 275720 | 275911 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 396 | 3165816 | 3166007 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 397 | 4192449 | 4192640 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 398 | 3161347 | 3161538 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 399 | 1472323 | 1472529 | - | NZ_CP020046.1 | Thiomonas intermedia |
| 400 | 4062580 | 4062771 | - | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 401 | 237269 | 237460 | + | NZ_CP028897.1 | Dongshaea marina |
| 402 | 2590352 | 2590543 | - | NZ_CP009787.1 | Yersinia rohdei |
| 403 | 3007426 | 3007617 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 404 | 1568019 | 1568210 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 405 | 4364585 | 4364776 | - | NZ_CP043727.1 | Yersinia canariae |
| 406 | 336370 | 336561 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 407 | 4378691 | 4378882 | - | NZ_CP032487.1 | Yersinia hibernica |
| 408 | 140799 | 140990 | + | NZ_CP046293.1 | Yersinia intermedia |
| 409 | 2525517 | 2525708 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 410 | 152894 | 153085 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 411 | 4801001 | 4801192 | + | NZ_CP014137.1 | Brenneria goodwinii |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP026328.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00673.23 | 0.87 | 355 | 1143 | same-strand | ribosomal L5P family C-terminus |
| 2 | PF00281.21 | 0.87 | 355 | 1143.0 | same-strand | Ribosomal protein L5 |
| 3 | PF17136.6 | 0.85 | 350 | 809 | same-strand | Ribosomal proteins 50S L24/mitochondrial 39S L24 |
| 4 | PF00467.31 | 0.64 | 264 | 809 | same-strand | KOW motif |
| 5 | PF00238.21 | 0.87 | 358 | 428 | same-strand | Ribosomal protein L14p/L23e |
| 6 | PF00366.22 | 1.0 | 409 | 0.0 | same-strand | Ribosomal protein S17 |
| 7 | PF00252.20 | 0.98 | 402 | 0 | same-strand | Ribosomal protein L16p/L10e |
| 8 | PF00189.22 | 1.0 | 410 | 426 | same-strand | Ribosomal protein S3, C-terminal domain |
| 9 | PF07650.19 | 1.0 | 410 | 426 | same-strand | KH domain |
| 10 | PF00237.21 | 0.99 | 407 | 1143.0 | same-strand | Ribosomal protein L22p/L17e |
| 11 | PF00203.23 | 0.98 | 401 | 1490.0 | same-strand | Ribosomal protein S19 |
| 12 | PF03947.20 | 0.99 | 407 | 1793.0 | same-strand | Ribosomal Proteins L2, C-terminal domain |
| 13 | PF00181.25 | 0.99 | 407 | 1793.0 | same-strand | Ribosomal Proteins L2, RNA binding domain |
| 14 | PF00253.23 | 0.82 | 335 | 1699 | same-strand | Ribosomal protein S14p/S29e |
++ More..