* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP048000.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00271.33
|
0.75
|
3
|
2674
|
opposite-strand
|
Helicase conserved C-terminal domain
|
2
|
PF17191.6
|
0.75
|
3
|
2674
|
opposite-strand
|
RecG wedge domain
|
3
|
PF00270.31
|
0.75
|
3
|
2674
|
opposite-strand
|
DEAD/DEAH box helicase
|
4
|
PF04851.17
|
0.75
|
3
|
2674
|
opposite-strand
|
Type III restriction enzyme, res subunit
|
5
|
PF13684.8
|
1.0
|
4
|
646.0
|
opposite-strand
|
Dihydroxyacetone kinase family
|
6
|
PF02734.19
|
1.0
|
4
|
646.0
|
opposite-strand
|
DAK2 domain
|
7
|
PF03780.15
|
1.0
|
4
|
256.0
|
opposite-strand
|
Asp23 family, cell envelope-related function
|
8
|
PF00830.21
|
1.0
|
4
|
135.5
|
opposite-strand
|
Ribosomal L28 family
|
9
|
PF09579.12
|
1.0
|
4
|
507.5
|
opposite-strand
|
Sporulation protein YtfJ (Spore YtfJ)
|
10
|
PF11167.10
|
1.0
|
4
|
919.0
|
opposite-strand
|
Protein of unknown function (DUF2953)
|
++ More..