Result : EXP02406
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP02406 |
| NCBI Accession ID | |
| Organism | Escherichia |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | ATGATGTTTGAGTTTTATATGGCAGAACGTCTTCGCCACCGCTGGGTGCGTCTGCGCTTATATCGTTTCCCCGGCTCTGTTTTGACCGATTACCGAATACTGAAGAATTACGCCAAAACACTGACAGGAGCAGGAGTATGA |
| Sequence | MMFEFYMAERLRHRWVRLRLYRFPGSVLTDYRILKNYAKTLTGAGV |
| Source of smORF | Metagenomic Ribo-seq |
| Function | The ORF matches to the profile of NF033498. Profile Description: YlcG family protein. Members of this family include YlcG from the DLP12 prophage region of Eschichia coli K-12, and homologs from the Gifsy-1 and Gifsy-2 prophage regions of Salmonella enterica subsp. enterica serovar Typhimurium str. LT2. Members of this protein family are small, about 46 amino acids long. YlcG is known to be expressed. It is encoded immediately downstream of the Holliday junction resolvase RusA. |
| Pubmed ID | 32601270 |
| Domain | CDD:411140 |
| Functional Category | Conserved domain based functional assignment |
| Uniprot ID | Q47272 |
| ORF Length (Amino Acid) | 46 |
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| Conservation Analysis |
No. of Species: 9
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 573730 | 573870 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 2 | 1853647 | 1853787 | + | NZ_LR134340.1 | Escherichia marmotae |
| 3 | 1625580 | 1625720 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 4 | 899188 | 899310 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 5 | 1767445 | 1767585 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 6 | 294464 | 294601 | - | NZ_CP033744.1 | Citrobacter freundii |
| 7 | 4587042 | 4587182 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 8 | 2670496 | 2670636 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 9 | 1328672 | 1328812 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 10 | 1776383 | 1776523 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 11 | 2448896 | 2449036 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF05866.13 | 0.67 | 6 | -3 | same-strand | Endodeoxyribonuclease RusA |
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