ProsmORF-pred
Result : B4U757
Protein Information
Information Type Description
Protein name 30S ribosomal protein S14 type Z
NCBI Accession ID CP001130.1
Organism Hydrogenobaculum sp. (strain Y04AAS1)
Left 247145
Right 247333
Strand +
Nucleotide Sequence ATGCCTAGAAAAGCGAAAGTTGTAAAGGATTTGAAGCATTTCCCTAAGTATGCCACTAGACAAAAAAATAGATGTCCTATATGCGGAAGACCTAGAGGGTTTTTAAGGAGATTCAACATGTGTAGGTTGTGTTTTAGAGAGATGGCTTTAAGCGGTGAGATTACCGGAGTAAGAAAATCCAGTTGGTGA
Sequence MPRKAKVVKDLKHFPKYATRQKNRCPICGRPRGFLRRFNMCRLCFREMALSGEITGVRKSSW
Source of smORF Swiss-Prot
Function Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. {ECO:0000255|HAMAP-Rule:MF_01364}.
Pubmed ID 19136599
Domain CDD:412331
Functional Category Metal-binding_and_Ribosomal_protein
Uniprot ID B4U757
ORF Length (Amino Acid) 62
++ More..
Conservation Analysis
Conservation Analysis
No. of Species: 521
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 668143 668331 + NC_017161.1 Hydrogenobacter thermophilus TK-6
2 716604 716792 - NC_013894.1 Thermocrinis albus DSM 14484
3 273797 273985 + NZ_CP007028.1 Thermocrinis ruber
4 1157174 1157362 - NC_000918.1 Aquifex aeolicus VF5
5 1616114 1616302 - NC_012438.1 Sulfurihydrogenibium azorense Az-Fu1
6 445583 445768 + NC_015732.1 Treponema caldarium DSM 7334
7 1147762 1147950 + NC_012440.1 Persephonella marina EX-H1
8 4420093 4420278 - NC_018014.1 Terriglobus roseus DSM 18391
9 5962109 5962294 - NC_020126.1 Myxococcus stipitatus DSM 14675
10 249452 249637 + NC_014926.1 Thermovibrio ammonificans HB-1
11 7991962 7992147 + NZ_CP022163.1 Melittangium boletus DSM 14713
12 752472 752657 + NC_015682.1 Thermodesulfobacterium geofontis OPF15
13 939330 939515 - NC_011959.1 Thermomicrobium roseum DSM 5159
14 1020674 1020859 + NC_011661.1 Dictyoglomus turgidum DSM 6724
15 1545936 1546121 + NC_015681.1 Thermodesulfatator indicus DSM 15286
16 2743876 2744061 - NC_014831.1 Thermaerobacter marianensis DSM 12885
17 2346881 2347066 - NC_013223.1 Desulfohalobium retbaense DSM 5692
18 3390182 3390367 - NZ_CP026538.1 Desulfovibrio carbinolicus
19 1346679 1346864 + NC_012796.1 Desulfovibrio magneticus RS-1
20 186617 186802 + NZ_CP018258.1 Dehalogenimonas formicexedens
21 3419474 3419659 - NC_015064.1 Granulicella tundricola MP5ACTX9
22 2321487 2321672 + NC_020304.1 Desulfocapsa sulfexigens DSM 10523
23 3901079 3901264 + NZ_CP022203.1 Corallococcus macrosporus DSM 14697
24 4595161 4595346 - NZ_CP012109.1 Myxococcus hansupus
25 3933017 3933202 - NC_014963.1 Terriglobus saanensis SP1PR4
26 853285 853470 + NC_011297.1 Dictyoglomus thermophilum H-6-12
27 522513 522698 + NC_011244.1 Borrelia recurrentis A1
28 674252 674437 + NC_016631.1 Granulicella mallensis MP5ACTX8
29 1923803 1923988 + NC_008554.1 Syntrophobacter fumaroxidans MPOB
30 1278921 1279106 + NC_006138.1 Desulfotalea psychrophila LSv54
31 3538388 3538573 - NC_015577.1 Treponema azotonutricium ZAS-9
32 209615 209785 + NC_015714.1 Treponema paraluiscuniculi Cuniculi A
33 5271813 5271998 + NZ_CP030840.1 Acidisarcina polymorpha
34 3860995 3861180 + NC_008095.1 Myxococcus xanthus DK 1622
35 499060 499245 + NZ_CP013704.1 Borrelia anserina Es
36 505256 505441 + NZ_CP007022.1 Borrelia parkeri HR1
37 505383 505568 + NC_008710.1 Borrelia turicatae 91E135
38 507955 508140 + NZ_CP011060.1 Borrelia hermsii CC1
39 1452137 1452322 - NZ_AP013035.1 Thermosulfidibacter takaii ABI70S6
40 543668 543853 + NZ_CP031518.1 Treponema ruminis
41 2368643 2368828 - NC_018664.1 Gottschalkia acidurici 9a
42 1325885 1326070 + NC_012881.1 Maridesulfovibrio salexigens DSM 2638
43 1652691 1652876 - NC_015388.1 Desulfobacca acetoxidans DSM 11109
44 2807495 2807680 - NC_015578.1 Treponema primitia ZAS-2
45 4069557 4069742 - NZ_CP042806.1 Terriglobus albidus
46 522445 522630 + NZ_CP028884.1 Borrelia turcica IST7
47 2719143 2719328 - NZ_CP021850.1 Pseudoclostridium thermosuccinogenes
48 4070467 4070652 - NZ_CP021850.1 Pseudoclostridium thermosuccinogenes
49 446319 446504 + NZ_AP017378.1 Desulfovibrio ferrophilus
50 474300 474476 - NZ_CP042909.1 Thermosulfurimonas marina
51 803983 804168 - NZ_LT635475.1 Ezakiella massiliensis
52 402782 402967 - NZ_CP024333.1 Borrelia miyamotoi
53 6665190 6665375 + NZ_CP063849.1 Paludibaculum fermentans
54 877577 877762 + NC_017094.1 Leptospirillum ferrooxidans C2-3
55 2350145 2350330 + NC_016633.1 Sphaerochaeta pleomorpha str. Grapes
56 1473599 1473784 - NZ_CP045504.1 Desulfovibrio sulfodismutans DSM 3696
57 2658548 2658733 - NC_008346.1 Syntrophomonas wolfei subsp. wolfei str. Goettingen G311
58 2276523 2276708 - NC_007519.1 Desulfovibrio alaskensis G20
59 1071340 1071525 - NC_014314.1 Dehalogenimonas lykanthroporepellens BL-DC-9
60 87767 87952 + NZ_CP014150.1 Paeniclostridium sordellii
61 500987 501172 + NZ_CP044535.1 Borrelia maritima
62 624001 624186 + NC_017583.1 Spirochaeta thermophila DSM 6578
63 665759 665944 + NC_017098.1 Spirochaeta africana DSM 8902
64 142699 142884 + NC_011899.1 Halothermothrix orenii H 168
65 505590 505775 + NZ_CP028861.1 Borreliella garinii
66 501436 501621 + NC_015921.1 Borreliella bissettii DN127
67 1017619 1017804 + NC_014364.1 Sediminispirochaeta smaragdinae DSM 11293
68 475964 476149 + NC_018024.1 Acetomicrobium mobile DSM 13181
69 2169605 2169790 - NC_003869.1 Caldanaerobacter subterraneus subsp. tengcongensis MB4
70 2014330 2014515 - NC_015436.1 Sphaerochaeta coccoides DSM 17374
71 52650 52835 + NC_014833.1 Ruminococcus albus 7 = DSM 20455
72 2176778 2176948 - NC_017448.1 Fibrobacter succinogenes subsp. succinogenes S85
73 215513 215698 + NC_013895.2 Mageeibacillus indolicus UPII9-5
74 2352274 2352459 - NZ_CP014229.1 Desulfovibrio fairfieldensis
75 2694264 2694449 - NC_015500.1 Treponema brennaborense DSM 12168
76 1692001 1692186 + NZ_CP054140.1 Desulfobulbus oligotrophicus
77 3071788 3071973 - NC_015152.1 Sphaerochaeta globosa str. Buddy
78 503868 504053 + NZ_CP015796.1 Borreliella mayonii
79 900982 901167 + NC_011898.1 Ruminiclostridium cellulolyticum H10
80 363178 363348 - NZ_CP040098.1 Desulfoglaeba alkanexedens ALDC
81 887126 887311 + NC_014972.1 Desulfobulbus propionicus DSM 2032
82 562841 563005 + NZ_CP046996.1 Dehalobacter restrictus
83 5776077 5776262 - NZ_CP015136.1 Luteitalea pratensis
84 1937829 1938014 - NC_014209.1 Thermoanaerobacter mathranii subsp. mathranii str. A3
85 1958059 1958244 - NZ_CP009170.1 Thermoanaerobacter kivui
86 2005156 2005341 - NC_013921.1 Thermoanaerobacter italicus Ab9
87 787409 787594 + NC_013525.1 Thermobaculum terrenum ATCC BAA-798
88 2099610 2099795 - NZ_HF545616.1 Ruminococcus bicirculans
89 1839420 1839605 - NC_017455.1 Halanaerobium praevalens DSM 2228
90 1156765 1156950 + NC_013523.1 Sphaerobacter thermophilus DSM 20745
91 1518327 1518512 - NZ_LT906446.1 Megamonas hypermegale
92 1211216 1211401 - NC_015949.1 Caldicellulosiruptor lactoaceticus 6A
93 1808228 1808413 - NC_014721.1 Caldicellulosiruptor kristjanssonii I77R1B
94 1151123 1151308 + NC_014720.1 Caldicellulosiruptor kronotskyensis 2002
95 1814499 1814684 - NC_012034.1 Caldicellulosiruptor bescii DSM 6725
96 1549445 1549630 - NC_014657.1 Caldicellulosiruptor owensensis OL
97 979852 980037 + NC_014392.1 Caldicellulosiruptor obsidiansis OB47
98 1043756 1043941 + NC_014652.1 Caldicellulosiruptor hydrothermalis 108
99 1010475 1010660 + NZ_CP034791.1 Caldicellulosiruptor changbaiensis
100 2399020 2399205 - NC_009437.1 Caldicellulosiruptor saccharolyticus DSM 8903
101 1052856 1053020 + NZ_CP061800.1 Desulfonema magnum
102 2454295 2454480 + NC_016629.1 Desulfocurvibacter africanus subsp. africanus str. Walvis Bay
103 177997 178182 + NZ_LN824141.1 Defluviitoga tunisiensis
104 2592674 2592859 - NC_018870.1 Thermacetogenium phaeum DSM 12270
105 846843 847028 + NC_009943.1 Desulfococcus oleovorans Hxd3
106 1125465 1125650 - NC_014330.1 Brachyspira pilosicoli 95/1000
107 2250699 2250884 + NZ_CP046932.1 Brachyspira hyodysenteriae
108 1284387 1284572 - NZ_CP019914.1 Brachyspira hampsonii
109 2106855 2107040 + NC_014150.1 Brachyspira murdochii DSM 12563
110 2870974 2871159 - NC_017243.1 Brachyspira intermedia PWS/A
111 1061739 1061906 + NC_008576.1 Magnetococcus marinus MC-1
112 1408153 1408338 + NZ_CP059066.1 Koleobacter methoxysyntrophicus
113 3948639 3948824 - NZ_CP019870.1 Clostridioides difficile
114 1139190 1139375 + NZ_CP016757.1 Cloacibacillus porcorum
115 2607601 2607786 - NC_015385.1 Treponema succinifaciens DSM 2489
116 862140 862325 + NZ_CP061336.1 Ruminiclostridium herbifermentans
117 1684434 1684619 + NZ_AP014945.1 Caldimicrobium thiodismutans
118 1635932 1636102 - NC_015437.1 Selenomonas sputigena ATCC 35185
119 1218878 1219063 - NC_013522.1 Thermanaerovibrio acidaminovorans DSM 6589
120 2135084 2135269 - NZ_CP042914.1 Roseimaritima ulvae
121 308552 308737 + NZ_CP007032.1 Desulfitobacterium metallireducens DSM 15288
122 402507 402692 + NZ_CP006950.1 Dehalococcoides mccartyi CG4
123 1034641 1034826 - NZ_CP008796.1 Thermodesulfobacterium commune DSM 2178
124 420678 420863 + NC_014964.1 Thermoanaerobacter brockii subsp. finnii Ako-1
125 2288325 2288510 - NC_015958.1 Thermoanaerobacter wiegelii Rt8.B1
126 3230104 3230262 - NC_014365.1 Desulfarculus baarsii DSM 2075
127 412254 412439 + NC_015172.1 Syntrophobotulus glycolicus DSM 8271
128 1935683 1935868 - NZ_CP068564.1 Keratinibaculum paraultunense
129 349678 349863 + NZ_CP054142.1 Treponema parvum
130 2410372 2410557 - NZ_AP021875.1 Desulfosarcina widdelii
131 2249396 2249581 + NZ_AP018449.1 Methylomusa anaerophila
132 4069744 4069929 - NC_012108.1 Desulfobacterium autotrophicum HRM2
133 2637776 2637961 + NC_018020.1 Turneriella parva DSM 21527
134 3367436 3367621 - NZ_CP025197.1 Acetivibrio saccincola
135 4199624 4199809 + NC_005027.1 Rhodopirellula baltica SH 1
136 6984567 6984752 + NZ_AP021876.1 Desulfosarcina ovata subsp. sediminis
137 942954 943139 + NZ_CP067016.1 Anaerococcus obesiensis
138 327653 327838 + NZ_CP066014.1 Anaerococcus vaginalis
139 2816589 2816774 - NC_020134.1 Thermoclostridium stercorarium subsp. stercorarium DSM 8532
140 944137 944307 + NC_023035.1 Salinispira pacifica
141 2106657 2106842 - NC_014654.1 Halanaerobium hydrogeniformans
142 1345454 1345639 - NC_015318.1 Hippea maritima DSM 10411
143 62465 62650 + NZ_CP036259.1 Sporomusa termitida
144 1401299 1401469 + NC_010814.1 Geobacter lovleyi SZ
145 1090724 1090909 - NC_017096.1 Caldisericum exile AZM16c01
146 4496124 4496309 - NC_016627.1 Acetivibrio clariflavus DSM 19732
147 509267 509452 + NZ_CP016502.1 Acetivibrio thermocellus DSM 2360
148 823401 823586 - NC_010003.1 Petrotoga mobilis SJ95
149 338580 338765 + NZ_LN879430.1 Herbinix luporum
150 359318 359503 + NC_015555.1 Thermoanaerobacterium xylanolyticum LX-11
151 2251552 2251737 - NZ_CP047602.1 Thermoanaerobacterium aotearoense
152 435507 435692 + NC_014410.1 Thermoanaerobacterium thermosaccharolyticum DSM 571
153 3264969 3265154 - NC_015687.1 Clostridium acetobutylicum DSM 1731
154 4546539 4546724 - NZ_CP036281.1 Polystyrenella longa
155 2372922 2373107 - NZ_AP021874.1 Desulfosarcina alkanivorans
156 1161338 1161523 + NZ_AP018712.1 Tepiditoga spiralis
157 226195 226380 + NC_010718.1 Natranaerobius thermophilus JW/NM-WN-LF
158 7053934 7054119 + NZ_CP035758.1 Ktedonosporobacter rubrisoli
159 4060652 4060837 - NC_018645.1 Desulfobacula toluolica Tol2
160 1709836 1710021 - NC_012483.1 Acidobacterium capsulatum ATCC 51196
161 1049148 1049333 - NZ_AP022589.1 Mycolicibacter minnesotensis
162 2892836 2893021 - NZ_AP022609.1 Mycolicibacter hiberniae
163 2067263 2067433 - NC_007503.1 Carboxydothermus hydrogenoformans Z-2901
164 324302 324487 + NZ_CP027226.1 Fastidiosipila sanguinis
165 409890 410075 + NZ_CP048436.1 Flavonifractor plautii
166 349881 350051 + NC_021184.1 Desulfoscipio gibsoniae DSM 7213
167 1700725 1700895 - NZ_CP011402.1 Denitrobacterium detoxificans
168 2504216 2504401 - NZ_CP036150.1 Oceanispirochaeta crateris
169 2485919 2486104 - NC_011768.1 Desulfatibacillum aliphaticivorans
170 148323 148508 + NZ_CP007452.1 Peptoclostridium acidaminophilum DSM 3953
171 3725426 3725611 + NZ_CP017269.1 Geosporobacter ferrireducens
172 3356771 3356956 - NZ_CP015217.1 Leptospira tipperaryensis
173 1478724 1478909 - NZ_AP017470.1 Thermotomaculum hydrothermale
174 1669768 1669953 - NZ_CP042912.1 Mariniblastus fucicola
175 2358487 2358672 + NZ_CP035807.1 Thiospirochaeta perfilievii
176 3242213 3242398 - NZ_CP040058.1 Anaerostipes rhamnosivorans
177 370320 370505 + NZ_CP036345.1 Anaerostipes caccae L1-92
178 1793800 1793964 + NZ_LT828648.1 Nitrospira japonica
179 1316935 1317120 - NZ_LT635480.1 Ndongobacter massiliensis
180 2546742 2546912 - NC_013204.1 Eggerthella lenta DSM 2243
181 1138979 1139164 + NC_014221.1 Truepera radiovictrix DSM 17093
182 1793433 1793618 + NZ_CP021434.1 Tumebacillus avium
183 1082182 1082367 + NZ_CP018099.1 Caldithrix abyssi DSM 13497
184 1159935 1160120 + NZ_CP027783.1 Tetragenococcus osmophilus
185 1127296 1127466 - NC_013170.1 Cryptobacterium curtum DSM 15641
186 220060 220245 + NC_015519.1 Tepidanaerobacter acetatoxydans Re1
187 1984957 1985142 + NZ_LT990039.1 Massilistercora timonensis
188 4555079 4555264 - NZ_CP015756.1 Clostridium estertheticum subsp. estertheticum
189 244256 244426 + NZ_AP019367.1 Parolsenella catena
190 511224 511394 + NC_015499.1 Thermodesulfobium narugense DSM 14796
191 4432803 4432988 - NZ_CP011803.1 Clostridium carboxidivorans P7
192 257709 257894 + NZ_CP016786.1 Clostridium isatidis
193 4364424 4364609 - NZ_CP022657.1 Tumebacillus algifaecis
194 1906266 1906436 - NC_022567.1 Adlercreutzia equolifaciens DSM 19450
195 2968572 2968757 - NC_008261.1 Clostridium perfringens ATCC 13124
196 3531929 3532114 - NZ_CP030775.1 Clostridium butyricum
197 225191 225376 + NC_022571.1 Clostridium saccharobutylicum DSM 13864
198 239586 239771 + NZ_CP017253.2 Clostridium taeniosporum
199 378935 379105 + NC_014836.1 Desulfurispirillum indicum S5
200 5283178 5283363 - NZ_CP020953.1 Clostridium drakei
201 4640838 4641023 + NZ_CP009933.1 Clostridium scatologenes
202 973666 973851 - NZ_CP071376.1 Clostridium gasigenes
203 220014 220199 + NC_011837.1 Clostridium kluyveri NBRC 12016
204 1292119 1292289 - NC_013203.1 Lancefieldella parvulum DSM 20469
205 619844 620029 - NC_019892.1 Singulisphaera acidiphila DSM 18658
206 2875112 2875297 - NZ_CP014170.1 Clostridium tyrobutyricum
207 1385137 1385322 + NZ_CP018477.1 Thermogutta terrifontis
208 2254388 2254573 - NC_014220.1 Syntrophothermus lipocalidus DSM 12680
209 830334 830519 + NZ_CP031115.1 Rubrobacter indicoceani
210 5440101 5440286 + NZ_CP036278.1 Aeoliella mucimassa
211 197129 197314 + NZ_CP043998.1 Clostridium diolis
212 2016337 2016522 - NZ_CP007514.1 Rubrobacter radiotolerans
213 1543422 1543607 + NZ_CP036299.1 Planctopirus ephydatiae
214 612203 612388 + NC_014148.1 Planctopirus limnophila DSM 3776
215 242059 242244 + NC_008593.1 Clostridium novyi NT
216 251518 251703 + NZ_CP027286.1 Clostridium chauvoei
217 2016179 2016364 + NZ_CP023671.1 Clostridium septicum
218 2950022 2950207 + NZ_AP022562.1 Mycobacterium novum
219 3532955 3533140 - NC_015576.1 Mycolicibacter sinensis
220 1510386 1510571 - NC_013385.1 Ammonifex degensii KC4
221 3033741 3033926 + NC_014962.1 Isosphaera pallida ATCC 43644
222 272796 272981 + NZ_CP032416.1 Clostridium fermenticellae
223 2072115 2072300 - NZ_CP012395.1 Clostridium autoethanogenum DSM 10061
224 4439345 4439530 - NC_014328.1 Clostridium ljungdahlii DSM 13528
225 506936 507118 - NC_017079.1 Caldilinea aerophila DSM 14535 = NBRC 104270
226 2260697 2260882 - NZ_LT906477.1 Clostridium cochlearium
227 248478 248663 + NC_021284.1 Spiroplasma syrphidicola EA-1
228 225611 225796 + NC_021280.1 Spiroplasma chrysopicola DF-1
229 319954 320124 + NC_007759.1 Syntrophus aciditrophicus SB
230 2037357 2037521 - NC_006512.1 Idiomarina loihiensis L2TR
231 4495726 4495911 - NC_014393.1 Clostridium cellulovorans 743B
232 759780 759965 + NC_022116.1 Amycolatopsis mediterranei RB
233 1500276 1500461 - NC_010644.1 Elusimicrobium minutum Pei191
234 2848533 2848718 - NZ_CP061007.1 Saccharopolyspora spinosa
235 7128198 7128383 + NZ_CP031142.1 Saccharopolyspora pogona
236 724052 724237 - NC_015707.1 Pseudothermotoga thermarum DSM 5069
237 5219132 5219317 - NC_009767.1 Roseiflexus castenholzii DSM 13941
238 4688224 4688394 + NZ_CP048429.1 Paenibacillus jilunlii
239 87986 88171 - NZ_AP019551.1 Athalassotoga saccharophila
240 2655841 2656026 - NZ_HG917868.1 Clostridium bornimense
241 2754910 2755080 + NZ_CP009287.1 Paenibacillus graminis
242 285139 285324 + NZ_CP014204.2 Clostridium baratii
243 973361 973534 - NZ_CP039292.1 Actinomyces procaprae
244 250154 250339 - NZ_CP015235.1 Rhodococcus fascians D188
245 7118413 7118598 - NZ_CP036274.1 Anatilimnocola aggregata
246 3541863 3542033 + NZ_CP016379.1 Anoxybacter fermentans
247 692230 692415 + NZ_CP009302.1 Berryella intestinalis
248 775376 775561 + NZ_CP011883.2 Mycobacterium haemophilum DSM 44634
249 1229013 1229198 + NZ_CP025546.1 Mycobacterium paragordonae
250 1004900 1005085 + NZ_LR130759.1 Mycobacterium basiliense
251 2690863 2691048 + NZ_CP058277.1 Mycobacterium marinum
252 2735322 2735507 + NZ_AP022572.1 Mycobacterium shottsii
253 4317783 4317968 + NC_022663.1 Mycobacterium kansasii ATCC 12478
254 1298181 1298366 + NZ_AP018410.1 Mycobacterium pseudoshottsii JCM 15466
255 1291443 1291607 - NZ_CP007519.1 Trueperella pyogenes
256 4684148 4684333 - NC_016948.1 Mycobacterium paraintracellulare
257 968971 969156 + NZ_AP018164.1 Mycobacterium shigaense
258 4550303 4550488 - NC_016946.1 Mycobacterium intracellulare ATCC 13950
259 5249916 5250101 + NZ_AP022620.1 Mycolicibacterium anyangense
260 3383389 3383541 + NC_013720.1 Pirellula staleyi DSM 6068
261 4375969 4376154 - NZ_CP009360.4 Mycobacterium avium subsp. hominissuis
262 630431 630616 + NZ_CP022521.1 Actinoalloteichus hoggarensis
263 652604 652789 + NZ_CP016076.1 Actinoalloteichus fjordicus
264 2984014 2984199 - NZ_AP022575.1 Mycobacterium shinjukuense
265 3674619 3674804 - NC_011831.1 Chloroflexus aggregans DSM 9485
266 1700462 1700647 - NZ_AP022568.1 Mycobacterium simiae
267 3319937 3320122 - NZ_AP022614.1 Mycobacterium parmense
268 6111739 6111924 + NZ_CP036292.1 Rosistilla oblonga
269 640514 640699 + NZ_AP022613.1 Mycobacterium conspicuum
270 4762468 4762653 + NZ_AP022573.1 Mycobacterium saskatchewanense
271 3473047 3473232 - NZ_AP022590.1 Mycobacterium mantenii
272 2998328 2998492 - NZ_CP013659.2 Planococcus rifietoensis
273 293211 293396 + NZ_CP030032.1 Bradymonas sediminis
274 5779706 5779891 - NC_015312.1 Pseudonocardia dioxanivorans CB1190
275 1991920 1992105 + NZ_AP023172.1 Rhodococcus qingshengii
276 5809414 5809569 - NC_016609.1 Niastella koreensis GR20-10
277 3110759 3110923 - NZ_CP016538.2 Planococcus maritimus
278 5200091 5200276 + NZ_AP022582.1 Mycobacterium seoulense
279 2453555 2453740 - NZ_AP022565.1 Mycolicibacterium alvei
280 4428900 4429085 - NZ_CP023147.1 Mycobacterium marseillense
281 3097137 3097301 - NZ_CP016539.2 Planococcus plakortidis
282 5000456 5000641 + NZ_AP022619.1 Mycobacterium paraseoulense
283 521062 521247 + NC_015564.1 Hoyosella subflava DQS3-9A1
284 813124 813309 - NZ_CP014163.1 Aerococcus urinaehominis
285 175095 175265 + NZ_CP041406.1 Sulfurimonas paralvinellae
286 2735697 2735882 - NC_017790.1 Deinococcus gobiensis I-0
287 3139943 3140107 - NZ_CP059540.1 Planococcus maritimus
288 1198013 1198198 - NZ_AP022615.1 Mycobacterium heidelbergense
289 8666789 8666974 - NZ_CP016174.1 Amycolatopsis orientalis
290 1612009 1612194 - NZ_CP009709.1 Weizmannia coagulans DSM 1 = ATCC 7050
291 4330502 4330687 - NZ_CP045929.1 Saccharopolyspora coralli
292 11071592 11071777 - NC_010162.1 Sorangium cellulosum So ce56
293 3672426 3672611 - NZ_AP022581.1 Mycobacterium lacus
294 2971681 2971866 - NZ_CP048813.1 Rhodococcus triatomae
295 2177650 2177835 - NZ_CP029543.1 Mycobacterium leprae
296 2162451 2162636 - NC_008148.1 Rubrobacter xylanophilus DSM 9941
297 2417703 2417888 + NZ_CP043474.1 Mycobacterium grossiae
298 3251790 3251975 - NZ_AP022586.1 Mycolicibacterium litorale
299 5067136 5067309 + NZ_AP022586.1 Mycolicibacterium litorale
300 309354 309539 + NC_007575.1 Sulfurimonas denitrificans DSM 1251
301 1641079 1641264 + NZ_LN831039.1 Mycolicibacterium smegmatis
302 6742157 6742342 - NZ_CP012150.1 Mycobacterium goodii
303 686915 687100 + NC_021252.1 Amycolatopsis keratiniphila
304 7754807 7754992 - NZ_CP008953.1 Amycolatopsis japonica
305 1322933 1323118 + NC_023151.1 Thermotoga maritima MSB8
306 3587053 3587259 - NZ_CP040449.1 Aeromonas simiae
307 812627 812812 + NC_000962.3 Mycobacterium tuberculosis H37Rv
308 827786 827971 + NC_015848.1 Mycobacterium canettii CIPT 140010059
309 2210249 2210440 - NZ_CP033732.1 Staphylococcus hominis
310 2978451 2978624 - NZ_CP053989.1 Niallia circulans
311 1322691 1322873 - NC_004432.1 Mycoplasma penetrans HF-2
312 59169 59351 + NZ_LR215023.1 Mycoplasma iowae
313 1320458 1320643 - NZ_CP036433.1 Lignipirellula cremea
314 3563100 3563285 - NZ_CP010271.1 Mycobacteroides saopaulense
315 183673 183858 - NZ_CP012333.1 Labilithrix luteola
316 3327830 3328015 - NZ_CP011853.1 Gordonia phthalatica
317 5027211 5027396 - NZ_CP059694.1 Gordonia rubripertincta
318 1332350 1332535 + NC_013642.1 Thermotoga naphthophila RKU-10
319 1308746 1308931 + NC_009486.1 Thermotoga petrophila RKU-1
320 988979 989164 + NC_011978.1 Thermotoga neapolitana DSM 4359
321 337112 337297 + NC_008578.1 Acidothermus cellulolyticus 11B
322 279324 279506 - NZ_LR214972.1 Mycoplasmopsis bovirhinis
323 671295 671480 + NC_014011.1 Aminobacterium colombiense DSM 12261
324 4045845 4046030 - NZ_CP019066.1 Tsukamurella tyrosinosolvens
325 5853345 5853530 - NZ_CP020809.1 Mycobacterium dioxanotrophicus
326 3978858 3979043 - NZ_CP027793.1 Rhodococcus hoagii
327 3865279 3865464 - NZ_CP014955.1 Mycobacteroides abscessus
328 1158658 1158843 + NZ_CP010028.1 Deinococcus radiopugnans
329 405175 405360 + NC_013159.1 Saccharomonospora viridis DSM 43017
330 447759 447944 + NZ_CP021081.1 Deinococcus ficus
331 4682127 4682312 - NZ_AP022561.1 Mycolicibacterium aichiense
332 1502274 1502459 + NZ_CP011269.1 Mycolicibacterium fortuitum
333 6409926 6410111 - NZ_AP022579.1 Mycolicibacterium boenickei
334 3921315 3921500 - NZ_AP018165.1 [Mycobacterium] stephanolepidis
335 268720 268902 + NZ_CP002082.1 Spiroplasma mirum ATCC 29335
336 295074 295256 + NZ_CP011855.1 Spiroplasma atrichopogonis
337 312019 312201 + NZ_CP011856.1 Spiroplasma eriocheiris
338 217211 217396 + NC_014506.1 Sulfurimonas autotrophica DSM 16294
339 3003229 3003384 - NZ_CP024035.1 Priestia aryabhattai
340 2456211 2456396 + NZ_CP053564.1 Pseudonocardia broussonetiae
341 3313481 3313666 - NC_016894.1 Acetobacterium woodii DSM 1030
342 3451773 3451958 - NZ_CP027433.1 Gordonia iterans
343 5472607 5472792 + NZ_CP033972.1 Gordonia insulae
344 4457343 4457528 + NZ_AP022567.1 Mycolicibacterium mageritense
345 5048400 5048585 + NZ_AP022616.1 Mycolicibacterium phocaicum
346 2700368 2700532 - NZ_CP020772.1 Halobacillus mangrovi
347 886163 886348 - NC_011295.1 Coprothermobacter proteolyticus DSM 5265
348 681008 681181 - NZ_CP053642.1 Actinomyces marmotae
349 3958965 3959129 - NZ_CP032157.1 Paraflavitalea soli
350 2092036 2092221 + NZ_CP027114.1 Gordonia alkanivorans
351 5929279 5929464 - NZ_AP023355.1 Actinocatenispora thailandica
352 3306147 3306332 + NZ_AP022600.1 Mycolicibacterium tokaiense
353 3993501 3993686 - NZ_AP022612.1 Mycolicibacterium confluentis
354 2279846 2280031 - NC_012526.1 Deinococcus deserti VCD115
355 1266865 1267050 - NZ_AP022596.1 Mycolicibacterium helvum
356 4698193 4698378 - NZ_CP062008.1 Mycolicibacterium mucogenicum DSM 44124
357 1101238 1101423 - NZ_AP022599.1 Mycolicibacterium pulveris
358 198446 198631 + NC_014762.1 Sulfuricurvum kujiense DSM 16994
359 399768 399941 - NZ_LR134357.1 Actinomyces israelii
360 30794 30979 - NZ_CP036523.1 Peptacetobacter hiranonis
361 2198119 2198304 - NZ_AP022577.1 Mycolicibacterium aubagnense
362 1420344 1420529 + NZ_AP022618.1 Mycolicibacterium insubricum
363 7625299 7625484 - NC_009142.1 Saccharopolyspora erythraea NRRL 2338
364 2512498 2512683 + NZ_AP022595.1 Mycolicibacterium sarraceniae
365 3933126 3933311 - NC_013441.1 Gordonia bronchialis DSM 43247
366 1959134 1959319 - NC_008025.1 Deinococcus geothermalis DSM 11300
367 1150605 1150790 - NZ_CP011389.1 Deinococcus soli (ex Cha et al. 2016)
368 2672427 2672612 - NZ_CP013910.1 Deinococcus actinosclerus
369 4010474 4010659 - NC_016906.1 Gordonia polyisoprenivorans VH2
370 2489913 2490068 - NC_015177.1 Pseudopedobacter saltans DSM 12145
371 4674261 4674425 + NZ_CP042435.1 Panacibacter ginsenosidivorans
372 3982092 3982247 - NZ_CP054139.1 Mucilaginibacter mali
373 2972636 2972791 - NZ_CP016540.2 Planococcus versutus
374 3342336 3342500 - NZ_CP016534.2 Planococcus antarcticus DSM 14505
375 2197081 2197266 - NZ_AP022603.1 Mycolicibacterium fallax
376 4552989 4553174 - NZ_CP022752.1 Actinopolyspora erythraea
377 1350744 1350899 + NZ_CP049246.1 Sphingobacterium lactis
378 2400099 2400284 - NZ_AP022593.1 Mycolicibacterium arabiense
379 1108651 1108815 + NZ_AP017313.1 Mucilaginibacter gotjawali
380 4113502 4113687 - NZ_CP022208.1 Rhodococcus pyridinivorans
381 3775410 3775595 - NZ_LT906450.1 Rhodococcus rhodochrous
382 424333 424518 - NC_023062.1 Mycoplasma ovis str. Michigan
383 3508519 3508704 - NC_014158.1 Tsukamurella paurometabola DSM 20162
384 1988765 1988950 - NZ_CP010904.1 Kiritimatiella glycovorans
385 5459856 5460041 - NZ_AP022560.1 Mycolicibacterium moriokaense
386 3382498 3382689 + NZ_CP012898.1 Algibacter alginicilyticus
387 2315663 2315827 + NZ_CP023777.1 Chitinophaga caeni
388 2221203 2221388 + NZ_AP019307.1 Nocardioides baekrokdamisoli
389 4718613 4718798 - NC_013757.1 Geodermatophilus obscurus DSM 43160
390 1088429 1088614 + NC_013131.1 Catenulispora acidiphila DSM 44928
391 365040 365195 + NZ_CP034120.1 Glaciecola amylolytica
392 876058 876222 - NC_015321.1 Fluviicola taffensis DSM 16823
393 7231587 7231772 + NZ_CP015163.1 Amycolatopsis albispora
394 5526014 5526199 - NZ_AP022574.1 Mycolicibacterium psychrotolerans
395 2809396 2809581 - NZ_AP022608.1 Mycolicibacterium gadium
396 632990 633175 + NC_014165.1 Thermobispora bispora DSM 43833
397 1847486 1847641 - NC_016940.1 Saprospira grandis str. Lewin
398 1258163 1258348 + NC_013235.1 Nakamurella multipartita DSM 44233
399 2446428 2446592 - NZ_CP054614.1 Paenibacillus barcinonensis
400 1252891 1253064 + NZ_CP011454.1 Gemmatimonas phototrophica
401 2482325 2482510 + NZ_AP022588.1 Mycolicibacterium sediminis
402 2869 3060 + NZ_CP045296.1 Paenibacillus cellulositrophicus
403 11101437 11101622 - NZ_CP012752.1 Kibdelosporangium phytohabitans
404 186410 186595 + NC_014378.1 Acetohalobium arabaticum DSM 5501
405 242688 242873 - NZ_AP022598.1 Mycolicibacterium parafortuitum
406 1668522 1668707 + NZ_LR134352.1 Nocardia asteroides
407 1424109 1424294 + NC_008726.1 Mycolicibacterium vanbaalenii PYR-1
408 1183196 1183381 + NZ_CP011491.1 Mycolicibacterium vaccae 95051
409 659924 660109 - NZ_CP026746.1 Nocardia cyriacigeorgica
410 641839 642024 + NZ_AP022605.1 Mycobacterium doricum
411 5570005 5570190 + NZ_AP022601.1 Mycobacterium gallinarum
412 3745254 3745418 - NZ_CP032489.1 Arachidicoccus soli
413 5552037 5552222 - NZ_CP022088.2 Nocardia brasiliensis
414 3533356 3533541 - NZ_AP022563.1 Mycolicibacterium duvalii
415 185705 185869 + NZ_AP017422.1 Filimonas lacunae
416 3294427 3294612 - NC_013521.1 Sanguibacter keddieii DSM 10542
417 1136477 1136662 + NZ_LR134356.1 Mycolicibacterium aurum
418 347607 347792 + NC_018149.1 Mycoplasma wenyonii str. Massachusetts
419 607219 607392 + NZ_CP070228.1 Arcanobacterium phocisimile
420 688218 688400 + NZ_AP012547.1 Sulfuritalea hydrogenivorans sk43H
421 3740441 3740626 - NZ_AP022617.1 Mycolicibacterium monacense
422 3974575 3974760 - NZ_LR134355.1 Mycolicibacterium chitae
423 998292 998465 - NZ_CP072425.1 Pseudoalteromonas viridis
424 958903 959058 - NC_003361.3 Chlamydia caviae GPIC
425 883125 883289 + NC_020995.1 Enterococcus casseliflavus EC20
426 2062554 2062745 + NC_018013.1 Aequorivita sublithincola DSM 14238
427 1667048 1667233 + NZ_CP041694.1 Cellulosimicrobium cellulans
428 5085008 5085163 - NZ_CP042436.1 Mucilaginibacter ginsenosidivorans
429 1143455 1143655 - NZ_CP027669.1 Simplicispira suum
430 798496 798681 + NZ_CP037899.1 Methylacidiphilum kamchatkense Kam1
431 3514369 3514554 - NZ_LT906469.1 Mycolicibacter terrae
432 3086379 3086543 - NZ_CP028901.1 Algicoccus marinus
433 2456293 2456448 - NZ_CP014646.1 Thauera humireducens
434 331487 331642 + NZ_CP045235.1 Burkholderia cepacia
435 1898200 1898382 + NZ_CP018839.1 Thauera chlorobenzoica
436 828667 828831 - NZ_CP017774.1 Flavobacterium commune
437 3648527 3648682 + NZ_CP047897.1 Nibribacter ruber
438 3500608 3500793 + NZ_CP016793.1 Lentzea guizhouensis
439 699460 699645 + NC_013530.1 Xylanimonas cellulosilytica DSM 15894
440 3508260 3508445 + NZ_CP035495.1 Xylanimonas allomyrinae
441 2905855 2906037 - NZ_CP028339.1 Thauera aromatica K172
442 278408 278563 + NZ_CP010777.1 Rufibacter radiotolerans
443 2878897 2879052 + NZ_CP012643.1 Rufibacter tibetensis
444 667458 667643 + NC_010794.1 Methylacidiphilum infernorum V4
445 47080 47235 + NZ_CP043146.1 Bordetella holmesii
446 865013 865177 - NZ_CP054494.1 Flavobacterium columnare
447 1694270 1694455 + NZ_AP022570.1 Mycolicibacterium poriferae
448 2471046 2471210 + NZ_CP013119.1 Alcaligenes faecalis
449 3553076 3553267 - NC_017770.1 Solitalea canadensis DSM 3403
450 1054655 1054828 + NC_012489.1 Gemmatimonas aurantiaca T-27
451 2851601 2851756 + NZ_CP040896.1 Hymenobacter jejuensis
452 1324255 1324419 - NZ_CP013213.1 Erysipelothrix larvae
453 3568283 3568468 - NZ_CP029146.1 Rhodococcus ruber
454 295976 296158 + NZ_CP013197.1 Spiroplasma citri
455 627298 627480 - NZ_CP031088.1 Spiroplasma phoeniceum P40
456 1914604 1914777 - NC_015713.1 Simkania negevensis Z
457 3050388 3050552 + NZ_CP012040.1 Cyclobacterium amurskyense
458 505504 505668 + NZ_CP019236.1 Rhodoferax koreense
459 1495208 1495363 + NZ_CP020121.1 Comamonas kerstersii
460 3039547 3039711 + NC_015914.1 Cyclobacterium marinum DSM 745
461 3856998 3857153 - NZ_CP019239.1 Rhodoferax saidenbachensis
462 3401586 3401750 + NZ_CP037933.1 Flavobacterium nackdongense
463 774266 774430 - NZ_CP011071.1 Muricauda lutaonensis
464 1134003 1134176 + NZ_CP028103.1 Fusobacterium varium ATCC 27725
465 1459038 1459211 + NZ_CP028105.1 Fusobacterium ulcerans
466 676343 676498 + NZ_CP037922.1 Hymenobacter radiodurans
467 4699143 4699307 - NC_007908.1 Rhodoferax ferrireducens T118
468 385879 386043 - NZ_AP022345.1 Fluviibacter phosphoraccumulans
469 3192683 3192877 - NZ_CP042906.1 Hypericibacter terrae
470 4170618 4170773 - NZ_CP051298.1 Alicycliphilus denitrificans
471 2868868 2869059 - NZ_CP029145.1 Hymenobacter nivis
472 1180754 1180918 + NZ_CP017688.1 Flavobacterium crassostreae
473 1727930 1728094 + NZ_CP020918.1 Flavobacterium faecale
474 5264381 5264572 + NZ_CP048222.1 Rhodocytophaga rosea
475 2094908 2095102 + NZ_CP042582.1 Hypericibacter adhaerens
476 1588890 1589045 - NZ_CP045007.1 Latilactobacillus graminis
477 860274 860465 - NZ_CP040586.1 Furfurilactobacillus rossiae
478 1524962 1525153 - NZ_CP064056.1 Staphylococcus lloydii
479 1720009 1720164 - NZ_LR134503.1 Kaistella jeonii
480 788422 788577 + NZ_CP017476.1 Hydrogenophaga crassostreae
481 424768 424959 + NC_015161.1 Deinococcus proteolyticus MRP
482 56488 56652 - NZ_CP018787.1 Oxalobacter formigenes
483 684410 684595 + NC_007777.1 Frankia casuarinae
484 5306561 5306725 - NZ_HG322949.1 Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628
485 1449482 1449637 - NZ_CP032382.1 Chryseolinea soli
486 819909 820091 + NZ_CP034841.1 Mycoplasmopsis phocirhinis
487 3809052 3809216 - NZ_CP019240.1 Rhodoferax antarcticus
488 2027138 2027296 - NZ_LT629973.1 Akkermansia glycaniphila
489 1793914 1794087 + NZ_CP051884.1 Cellulomonas taurus
490 5276181 5276372 + NC_013037.1 Dyadobacter fermentans DSM 18053
491 765068 765232 + NZ_CP023422.1 Janthinobacterium svalbardensis
492 4626753 4626917 + NZ_CP041185.1 Janthinobacterium tructae
493 727004 727168 + NZ_CP048832.1 Janthinobacterium lividum
494 2681956 2682147 + NZ_CP058595.1 Costertonia aggregata
495 2517304 2517459 + NZ_CP014766.1 Pontibacter akesuensis
496 3219073 3219237 - NZ_CP054012.1 Parabacteroides distasonis
497 1541680 1541835 - NZ_AP018042.1 Labilibaculum antarcticum
498 2109862 2110053 + NZ_CP022389.1 Capnocytophaga canimorsus
499 790140 790331 - NZ_CP022378.1 Capnocytophaga cynodegmi
500 1942785 1942949 + NZ_LT906449.1 Capnocytophaga haemolytica
501 1987505 1987696 + NZ_CP022387.1 Capnocytophaga stomatis
502 135336 135500 - NZ_CP011404.1 Ligilactobacillus salivarius str. Ren
503 572186 572368 - NZ_LR214970.1 Mycoplasmopsis bovigenitalium
504 4308933 4309115 - NZ_CP021455.1 Comamonas serinivorans
505 2104648 2104818 - NZ_CP059567.1 Neisseria shayeganii
506 1201923 1202093 + NZ_CP059565.1 Neisseria wadsworthii
507 1856621 1856785 - NZ_CP041730.1 Chitinimonas arctica
508 700590 700748 - NZ_AP021898.1 Akkermansia muciniphila
509 585458 585640 - NC_012704.1 Corynebacterium kroppenstedtii DSM 44385
510 228392 228577 + NZ_CP010899.1 Spiroplasma kunkelii CR2-3x
511 2126776 2126958 + NZ_CP006841.1 Corynebacterium lactis RW2-5
512 1206461 1206643 + NZ_CP068168.1 Corynebacterium amycolatum
513 2057392 2057574 + NZ_CP009248.1 Corynebacterium sphenisci DSM 44792
514 1647644 1647826 + NZ_CP046883.1 Corynebacterium anserum
515 695544 695726 - NC_017301.2 Corynebacterium pseudotuberculosis C231
516 2238617 2238799 - NZ_LT906443.1 Corynebacterium ulcerans
517 744931 745095 - NZ_LN831026.1 Corynebacterium diphtheriae
518 860543 860725 - NC_021915.1 Corynebacterium maris DSM 45190
519 2619936 2620091 + NZ_CP015453.1 Dietzia psychralcaliphila
520 2461344 2461499 + NZ_CP015961.1 Dietzia timorensis
521 3431889 3432074 - NZ_AP014924.1 Limnochorda pilosa
522 1244455 1244610 + NZ_CP060715.1 Erysipelothrix inopinata
523 1425276 1425461 + NC_013739.1 Conexibacter woesei DSM 14684
524 1233515 1233673 - NZ_CP051774.1 Luteolibacter luteus
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Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NC_015732.1
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF00238.21 0.9 468 920.0 same-strand Ribosomal protein L14p/L23e
2 PF17136.6 0.89 462 582.0 same-strand Ribosomal proteins 50S L24/mitochondrial 39S L24
3 PF00467.31 0.84 436 581.0 same-strand KOW motif
4 PF00673.23 0.91 473 16 same-strand ribosomal L5P family C-terminus
5 PF00281.21 0.92 478 16.0 same-strand Ribosomal protein L5
6 PF00410.21 0.88 459 31 same-strand Ribosomal protein S8
7 PF00347.25 0.89 463 472 same-strand Ribosomal protein L6
8 PF00861.24 0.87 451 1037 same-strand Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
9 PF03719.17 0.88 459 1429 same-strand Ribosomal protein S5, C-terminal domain
10 PF00333.22 0.88 456 1429.0 same-strand Ribosomal protein S5, N-terminal domain
11 PF00327.22 0.73 380 1976.5 same-strand Ribosomal protein L30p/L7e
12 PF00366.22 0.73 379 1345 same-strand Ribosomal protein S17
13 PF00831.25 0.7 367 1643 same-strand Ribosomal L29 protein
++ More..