Result : B4U752
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L29 |
| NCBI Accession ID | CP001130.1 |
| Organism | Hydrogenobaculum sp. (strain Y04AAS1) |
| Left | 245317 |
| Right | 245517 |
| Strand | + |
| Nucleotide Sequence | ATGAAAGCTAGAGATCTTCATCAGTTAAGCATACAAGAGCTTGAGGCTAAGCTTAAAGAGTTGAAAACAGAGTTGTTTAAACTCCGTATTACAAAAAAGATCGAAGGTCTTAAAGAGCCTTCTAAAATAAGGGATACAAAGCGAGATATAGCAAGGATTTTGACAGTAATAAACGAAAAGAGGAGAGGCCAAGCGGTATGA |
| Sequence | MKARDLHQLSIQELEAKLKELKTELFKLRITKKIEGLKEPSKIRDTKRDIARILTVINEKRRGQAV |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl09943. Profile Description: N/A. This family represents the N-terminal region (approximately 8 residues) of the eukaryotic mitochondrial 39-S ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins (MRPs) are the counterparts of the cytoplasmic ribosomal proteins, in that they fulfil similar functions in protein biosynthesis. However, they are distinct in number, features and primary structure. |
| Pubmed ID | 19136599 |
| Domain | CDD:415815 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | B4U752 |
| ORF Length (Amino Acid) | 66 |
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| Conservation Analysis |
No. of Species: 18
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 476082 | 476279 | - | NZ_CP042909.1 | Thermosulfurimonas marina |
| 2 | 1036427 | 1036624 | - | NZ_CP008796.1 | Thermodesulfobacterium commune DSM 2178 |
| 3 | 750663 | 750860 | + | NC_015682.1 | Thermodesulfobacterium geofontis OPF15 |
| 4 | 1544079 | 1544282 | + | NC_015681.1 | Thermodesulfatator indicus DSM 15286 |
| 5 | 1682634 | 1682837 | + | NZ_AP014945.1 | Caldimicrobium thiodismutans |
| 6 | 2818537 | 2818737 | - | NC_020134.1 | Thermoclostridium stercorarium subsp. stercorarium DSM 8532 |
| 7 | 1329957 | 1330157 | + | NZ_CP007028.1 | Thermocrinis ruber |
| 8 | 1453867 | 1454064 | - | NZ_AP013035.1 | Thermosulfidibacter takaii ABI70S6 |
| 9 | 647916 | 648113 | - | NZ_CP048877.1 | Thermosulfuriphilus ammonigenes |
| 10 | 429496 | 429717 | + | NZ_CP006867.1 | Ignicoccus islandicus DSM 13165 |
| 11 | 2069078 | 2069287 | - | NC_007503.1 | Carboxydothermus hydrogenoformans Z-2901 |
| 12 | 507428 | 507631 | + | NZ_CP016502.1 | Acetivibrio thermocellus DSM 2360 |
| 13 | 1586378 | 1586542 | - | NC_006461.1 | Thermus thermophilus HB8 |
| 14 | 413719 | 413883 | + | NZ_CP014141.1 | Thermus parvatiensis |
| 15 | 2423502 | 2423714 | - | NZ_LR590481.1 | Hathewaya histolytica |
| 16 | 1151266 | 1151439 | + | NZ_CP011801.1 | Nitrospira moscoviensis |
| 17 | 1618371 | 1618568 | - | NC_012438.1 | Sulfurihydrogenibium azorense Az-Fu1 |
| 18 | 785124 | 785327 | - | NC_017161.1 | Hydrogenobacter thermophilus TK-6 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP042909.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00253.23 | 0.61 | 11 | 1606 | same-strand | Ribosomal protein S14p/S29e |
| 2 | PF00673.23 | 0.83 | 15 | 1055 | same-strand | ribosomal L5P family C-terminus |
| 3 | PF00281.21 | 0.83 | 15 | 1055 | same-strand | Ribosomal protein L5 |
| 4 | PF17136.6 | 0.83 | 15 | 691 | same-strand | Ribosomal proteins 50S L24/mitochondrial 39S L24 |
| 5 | PF00467.31 | 0.72 | 13 | 683 | same-strand | KOW motif |
| 6 | PF00238.21 | 0.83 | 15 | 307 | same-strand | Ribosomal protein L14p/L23e |
| 7 | PF00366.22 | 0.94 | 17 | 14 | same-strand | Ribosomal protein S17 |
| 8 | PF00252.20 | 0.94 | 17 | -3 | same-strand | Ribosomal protein L16p/L10e |
| 9 | PF00189.22 | 1.0 | 18 | 431.0 | same-strand | Ribosomal protein S3, C-terminal domain |
| 10 | PF07650.19 | 1.0 | 18 | 431.0 | same-strand | KH domain |
| 11 | PF00237.21 | 1.0 | 18 | 1106.5 | same-strand | Ribosomal protein L22p/L17e |
| 12 | PF00203.23 | 1.0 | 18 | 1473.5 | same-strand | Ribosomal protein S19 |
| 13 | PF03947.20 | 0.94 | 17 | 1790 | same-strand | Ribosomal Proteins L2, C-terminal domain |
| 14 | PF00181.25 | 0.94 | 17 | 1790 | same-strand | Ribosomal Proteins L2, RNA binding domain |
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