* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP014955.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00501.30
|
1.0
|
3
|
8508
|
same-strand
|
AMP-binding enzyme
|
2
|
PF00109.28
|
1.0
|
3
|
3109
|
same-strand
|
Beta-ketoacyl synthase, N-terminal domain
|
3
|
PF00698.23
|
1.0
|
3
|
3109
|
same-strand
|
Acyl transferase domain
|
4
|
PF02801.24
|
1.0
|
3
|
3109
|
same-strand
|
Beta-ketoacyl synthase, C-terminal domain
|
5
|
PF00550.27
|
1.0
|
3
|
3109
|
same-strand
|
Phosphopantetheine attachment site
|
6
|
PF01039.24
|
1.0
|
3
|
1540
|
same-strand
|
Carboxyl transferase domain
|
7
|
PF01545.23
|
1.0
|
3
|
51
|
opposite-strand
|
Cation efflux family
|
8
|
PF04602.14
|
1.0
|
3
|
3247.5
|
opposite-strand
|
Mycobacterial cell wall arabinan synthesis protein
|
9
|
PF14896.8
|
1.0
|
3
|
3247.5
|
opposite-strand
|
EmbC C-terminal domain
|
10
|
PF17689.3
|
1.0
|
3
|
3247.5
|
opposite-strand
|
Arabinosyltransferase concanavalin like domain
|
11
|
PF13191.8
|
1.0
|
3
|
6768
|
same-strand
|
AAA ATPase domain
|
++ More..