ProsmORF-pred
Result : B4SKY1
Protein Information
Information Type Description
Protein name 50S ribosomal protein L30
NCBI Accession ID CP001111.1
Organism Stenotrophomonas maltophilia (strain R551-3)
Left 895162
Right 895353
Strand +
Nucleotide Sequence ATGGCTAATGAGTCCAACAAGACTGTGAAGGTGCGCCTGGTGCGTGGCCTGCGTGGTGCTCAGTCGCGTCACCGCCTGTCGGTGCGTGCTCTGGGCCTGAACAAGCTGAACGATGTGCGTGAACTGAAGGACAGCCCGCAGGTTCGCGGCCTGATCAACACCGTTCACTACCTCGTCAAGGTTGAGGAGTAA
Sequence MANESNKTVKVRLVRGLRGAQSRHRLSVRALGLNKLNDVRELKDSPQVRGLINTVHYLVKVEE
Source of smORF Swiss-Prot
Function The ORF matches to the profile of cl00203. Profile Description: N/A. This family includes prokaryotic L30 and eukaryotic L7.
Pubmed ID
Domain CDD:412218
Functional Category Ribosomal_protein
Uniprot ID B4SKY1
ORF Length (Amino Acid) 63
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Conservation Analysis
Conservation Analysis
No. of Species: 208
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 1154392 1154583 + NZ_CP048044.1 Xanthomonas citri
2 816268 816459 - NZ_CP043476.1 Xanthomonas hyacinthi
3 4114350 4114541 + NZ_CP018725.1 Xanthomonas vesicatoria ATCC 35937
4 1187543 1187734 + NZ_CP072268.1 Xanthomonas euvesicatoria pv. alfalfae
5 928752 928943 + NZ_CP037883.1 Stenotrophomonas indicatrix
6 3770124 3770315 - NZ_CP058243.1 Xanthomonas campestris pv. raphani
7 2575371 2575562 - NC_016147.2 Pseudoxanthomonas spadix BD-a59
8 1863260 1863451 + NZ_CP060731.1 Pseudoxanthomonas mexicana
9 903059 903250 + NZ_CP007810.1 Xanthomonas oryzae pv. oryzicola
10 902468 902659 + NZ_CP033326.1 Xanthomonas cucurbitae
11 1158056 1158247 + NZ_CP028127.1 Xanthomonas vasicola pv. vasculorum
12 983611 983802 + NZ_CP012900.1 Stenotrophomonas acidaminiphila
13 881225 881416 + NZ_LS483377.1 Stenotrophomonas maltophilia
14 3129677 3129868 - NZ_LT853882.1 Xanthomonas fragariae
15 525534 525725 + NZ_CP046570.1 Xanthomonas albilineans
16 2406693 2406884 - NZ_CP016878.1 Xanthomonas hortorum
17 3295051 3295239 - NZ_CP064030.1 Dyella caseinilytica
18 1368458 1368655 + NZ_CP023406.1 Luteimonas chenhongjianii
19 2681680 2681877 - NZ_CP041242.1 Lysobacter alkalisoli
20 1566568 1566729 + NZ_AP014940.1 Lysobacter enzymogenes
21 340507 340668 + NZ_CP029556.1 Lysobacter oculi
22 2864751 2864912 - NZ_CP029843.1 Lysobacter maris
23 741698 741886 + NC_017033.1 Frateuria aurantia DSM 6220
24 2042447 2042608 - NZ_CP014841.1 Dyella thiooxydans
25 2627237 2627422 + NZ_CP060711.1 Thermomonas brevis
26 1087966 1088127 + NZ_CP046603.1 Lysobacter soli
27 1097219 1097380 + NC_020541.1 Rhodanobacter denitrificans
28 4208382 4208588 - NZ_CP011131.1 Lysobacter gummosus
29 4415056 4415262 - NZ_CP023465.1 Lysobacter capsici
30 1129310 1129471 + NZ_CP041046.1 Luteibacter pinisoli
31 1873048 1873209 - NZ_CP071517.1 Lysobacter arenosi
32 2273809 2273970 + NZ_CP060820.1 Lysobacter solisilvae (ex Woo and Kim 2020)
33 4490410 4490616 - NZ_CP011129.1 Lysobacter antibioticus
34 2334834 2334995 + NZ_CP042218.1 Luteimonas granuli
35 2691711 2691914 + NZ_CP017480.1 Luteibacter rhizovicinus DSM 16549
36 2138607 2138768 - NZ_AP018560.1 Aerosticca soli
37 3000479 3000676 - NZ_CP015249.1 Dokdonella koreensis DS-123
38 693347 693538 + NZ_CP053627.1 Xylella taiwanensis
39 545483 545674 + NC_004556.1 Xylella fastidiosa Temecula1
40 4170499 4170684 - NZ_CP027860.1 Ahniella affigens
41 3498615 3498782 - NZ_CP035704.1 Pseudolysobacter antarcticus
42 365638 365802 + NZ_CP011797.1 Reinekea forsetii
43 2999790 2999972 + NZ_CP066075.1 Paraburkholderia ginsengisoli
44 1386987 1387142 - NZ_CP034464.1 Undibacterium parvum
45 1805743 1805925 - NZ_CP031467.1 Paraburkholderia caffeinilytica
46 1498637 1498819 + NZ_CP022989.1 Paraburkholderia aromaticivorans
47 4066167 4066349 - NC_010681.1 Paraburkholderia phytofirmans PsJN
48 105943 106131 - NZ_CP027792.1 Pulveribacter suum
49 4505550 4505732 - NC_007951.1 Paraburkholderia xenovorans LB400
50 3701789 3701971 - NZ_CP024941.1 Paraburkholderia terricola
51 551266 551454 + NZ_CP031415.1 Saccharospirillum mangrovi
52 403406 403588 + NZ_CP060714.1 Diaphorobacter ruginosibacter
53 3172246 3172428 - NC_010622.1 Paraburkholderia phymatum STM815
54 2393612 2393794 + NZ_CP015958.1 Paraburkholderia caribensis
55 3684021 3684203 - NZ_CP024934.1 Paraburkholderia graminis
56 3288889 3289071 - NZ_CP026111.1 Paraburkholderia terrae
57 3742185 3742346 - NZ_CP039287.1 Cupriavidus necator H16
58 954637 954792 + NZ_CP024608.1 Massilia violaceinigra
59 1443550 1443717 - NZ_CP011257.1 Ralstonia mannitolilytica
60 60760 60951 + NZ_CP023276.1 Polynucleobacter difficilis
61 1250066 1250251 + NZ_CP027666.1 Ottowia oryzae
62 3528892 3529053 - NZ_CP032519.1 Cupriavidus oxalaticus
63 3150941 3151123 + NZ_CP017561.1 Paraburkholderia sprentiae WSM5005
64 1141370 1141534 - NZ_CP027669.1 Simplicispira suum
65 1570008 1570175 - NZ_CP012943.1 Ralstonia solanacearum
66 3371899 3372066 - NZ_CP016022.1 Ralstonia insidiosa
67 446241 446396 + NZ_CP013236.1 Collimonas pratensis
68 5304510 5304665 - NZ_HG322949.1 Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628
69 2985187 2985369 - NZ_CP009795.1 Burkholderia dolosa AU0158
70 427185 427367 + NZ_CP009832.1 Burkholderia multivorans ATCC BAA-247
71 1005855 1006037 + NZ_CP009727.1 Burkholderia mallei
72 340012 340194 + NZ_CP013398.1 Burkholderia seminalis
73 325150 325332 + NZ_CP013401.1 Burkholderia metallica
74 1626976 1627158 + NZ_CP011503.1 Burkholderia pyrrocinia
75 337503 337685 + NZ_CP013450.1 Burkholderia cenocepacia
76 333528 333710 + NZ_CP045235.1 Burkholderia cepacia
77 330878 331060 + NC_007510.1 Burkholderia lata
78 419905 420087 + NZ_CP013459.1 Burkholderia stagnalis
79 354134 354316 + NZ_CP020737.1 Paraburkholderia acidophila
80 3492811 3492993 - NC_007651.1 Burkholderia thailandensis E264
81 431928 432110 + NZ_CP013414.1 Burkholderia ubonensis
82 2032287 2032469 + NZ_CP008781.1 Burkholderia pseudomallei
83 2881730 2881912 - NZ_CP046909.1 Paraburkholderia acidiphila
84 2908666 2908848 - NZ_CP046913.1 Paraburkholderia acidisoli
85 2506781 2506963 + NZ_CP035900.1 Burkholderia glumae
86 2843258 2843440 - NZ_CP016278.1 Diaphorobacter polyhydroxybutyrativorans
87 2008773 2008955 + NZ_CP009555.1 Burkholderia oklahomensis C6786
88 183875 184036 + NZ_CP054624.1 Cupriavidus gilardii
89 968073 968255 + NC_014722.1 Mycetohabitans rhizoxinica HKI 454
90 2156504 2156686 - NZ_CP060783.1 Diaphorobacter aerolatus
91 333827 333982 + NZ_CP013235.1 Collimonas arenae
92 720368 720523 + NZ_CP013232.1 Collimonas fungivorans
93 633009 633191 + NC_015138.1 Acidovorax avenae subsp. avenae ATCC 19860
94 309664 309846 + NZ_CP002580.1 Burkholderia plantarii
95 673092 673274 + NC_008752.1 Acidovorax citrulli AAC00-1
96 4168534 4168716 - NZ_CP051298.1 Alicycliphilus denitrificans
97 4848979 4849146 - NZ_CP011807.3 Pandoraea faecigallinarum
98 364747 364914 + NZ_CP013481.2 Pandoraea apista
99 1157322 1157489 + NZ_CP047385.1 Pandoraea fibrosis
100 5213427 5213594 - NZ_CP011253.3 Pandoraea oxalativorans
101 5367430 5367597 - NZ_LT906435.1 Pandoraea sputorum
102 3408390 3408569 - NZ_CP018845.1 Herbaspirillum robiniae
103 4110661 4110822 - NZ_CP062803.1 Cupriavidus basilensis
104 5076619 5076783 - NZ_CP043575.1 Comamonas koreensis
105 141926 142105 + NZ_CP011930.1 Herbaspirillum seropedicae
106 159277 159456 + NZ_CP013737.1 Herbaspirillum rubrisubalbicans M1
107 181198 181377 + NZ_CP037993.1 Herbaspirillum huttiense
108 2788908 2789063 + NZ_LT671418.1 Herminiimonas arsenitoxidans
109 2795042 2795224 - NZ_CP029640.1 Paraburkholderia dokdonella
110 2670811 2670993 - NC_021287.1 Caballeronia insecticola
111 5010991 5011158 - NC_023018.2 Pandoraea pnomenusa
112 5245989 5246156 - NZ_CP010897.2 Pandoraea vervacti
113 5485111 5485278 - NZ_CP010310.2 Pandoraea pulmonicola
114 3594479 3594661 - NZ_CP021359.1 Acidovorax carolinensis
115 2952133 2952315 - NZ_CP049134.1 Paraburkholderia tropica
116 297024 297206 + NZ_AP018150.1 Mycoavidus cysteinexigens
117 3297620 3297802 + NZ_CP047650.1 Xylophilus rhododendri
118 767125 767280 + NZ_CP023422.1 Janthinobacterium svalbardensis
119 4628810 4628965 + NZ_CP041185.1 Janthinobacterium tructae
120 729061 729216 + NZ_CP048832.1 Janthinobacterium lividum
121 4306853 4307035 - NZ_CP021455.1 Comamonas serinivorans
122 254828 254983 + NZ_CP011568.3 Pandoraea thiooxydans
123 2692218 2692400 - NZ_CP060790.1 Acidovorax monticola
124 3854912 3855094 - NZ_CP019239.1 Rhodoferax saidenbachensis
125 4159649 4159807 - NZ_CP065748.1 Delftia lacustris
126 4204456 4204614 - NZ_CP017420.1 Delftia tsuruhatensis
127 1392445 1392636 + NZ_CP021106.3 Nitrosospira lacus
128 1497263 1497445 + NZ_CP020121.1 Comamonas kerstersii
129 4438479 4438658 + NZ_CP019038.1 Massilia putida
130 4270760 4270936 + NZ_CP046904.1 Massilia flava
131 5417034 5417210 + NZ_CP040017.1 Massilia umbonata
132 6460146 6460322 - NZ_CP036401.1 Massilia albidiflava
133 69476 69664 + NC_009379.1 Polynucleobacter asymbioticus QLW-P1DMWA-1
134 616173 616373 + NZ_CP024645.1 Rhizobacter gummiphilus
135 65451 65615 + NZ_CP030086.1 Polynucleobacter paneuropaeus
136 1575162 1575347 - NZ_CP021060.1 Taylorella equigenitalis
137 3527670 3527837 - NZ_CP068285.1 Ralstonia syzygii subsp. celebesensis
138 4327293 4327454 - NZ_CP017754.1 Cupriavidus malaysiensis
139 1583773 1583961 + NZ_LT615228.1 Polynucleobacter necessarius
140 491188 491370 + NZ_CP029331.1 Thauera hydrothermalis
141 2456430 2456612 + NZ_CP059467.1 Aromatoleum bremense
142 3785533 3785721 - NZ_CP020931.1 Marinobacter salarius
143 2614762 2614944 - NC_008786.1 Verminephrobacter eiseniae EF01-2
144 64847 65035 + NZ_CP007501.1 Polynucleobacter duraquae
145 592786 592968 + NZ_CP037867.1 Hydrogenophaga pseudoflava
146 5795806 5795973 - NZ_CP013480.3 Pandoraea norimbergensis
147 3848978 3849160 - NC_015677.1 Ramlibacter tataouinensis TTB310
148 2670076 2670264 - NZ_CP017715.1 Marinobacter salinus
149 394581 394769 + NC_017506.1 Marinobacter adhaerens HP15
150 933918 934109 + NZ_LR134378.1 Lautropia mirabilis
151 6035315 6035491 - NZ_CP028324.1 Massilia armeniaca
152 2080206 2080388 - NZ_CP059560.1 Aromatoleum petrolei
153 1259853 1260035 + NZ_CP064781.1 Azospira restricta
154 259540 259722 + NZ_CP054840.1 Acidovorax antarcticus
155 4033169 4033351 - NZ_CP035503.1 Rhodoferax sediminis
156 2454252 2454413 - NZ_CP014646.1 Thauera humireducens
157 1544015 1544200 - NC_016043.1 Taylorella asinigenitalis MCE3
158 337871 338053 + NC_008781.1 Polaromonas naphthalenivorans CJ2
159 790478 790660 + NZ_CP017476.1 Hydrogenophaga crassostreae
160 438617 438778 + NZ_AP018558.1 Hydrogenophilus thermoluteolus
161 2903814 2903975 - NZ_CP028339.1 Thauera aromatica K172
162 1900262 1900423 + NZ_CP018839.1 Thauera chlorobenzoica
163 1330606 1330794 + NZ_CP022423.1 Vitreoscilla filiformis
164 5879250 5879405 - NZ_CP016171.1 Bordetella bronchialis
165 1863940 1864125 - NZ_CP009238.1 Basilea psittacipulmonis DSM 24701
166 340783 340938 + NZ_LN879430.1 Herbinix luporum
167 656828 657010 + NZ_CP013729.1 Roseateles depolymerans
168 4157475 4157663 - NC_017964.1 Advenella kashmirensis WT001
169 4503020 4503208 - NZ_CP003915.1 Advenella mimigardefordensis DPN7
170 3820690 3820872 - NZ_CP016210.1 Azoarcus olearius
171 1538173 1538358 - NZ_CP047165.1 Pelistega ratti
172 2504092 2504274 - NZ_CP068055.1 Sutterella wadsworthensis
173 1141002 1141169 + NC_014221.1 Truepera radiovictrix DSM 17093
174 3472916 3473098 - NZ_CP051461.1 Polaromonas vacuolata
175 253492 253647 - NZ_CP031124.1 Ephemeroptericola cinctiostellae
176 663863 664021 + NZ_CP040709.1 Inhella inkyongensis
177 3350366 3350548 - NZ_CP064338.1 Schlegelella thermodepolymerans
178 6336798 6336989 - NC_007645.1 Hahella chejuensis KCTC 2396
179 332734 332916 + NZ_AP018786.1 Sutterella megalosphaeroides
180 307487 307669 + NZ_CP031416.1 Gallaecimonas mangrovi
181 690264 690446 + NZ_AP012547.1 Sulfuritalea hydrogenivorans sk43H
182 931782 931937 - NZ_CP012371.1 Nitrosospira briensis C-128
183 646765 646959 + NC_022357.1 Sulfuricella denitrificans skB26
184 2218515 2218700 + NZ_CP020046.1 Thiomonas intermedia
185 394523 394702 + NZ_CP019698.1 Desulfotomaculum ferrireducens
186 275992 276153 + NZ_CP007028.1 Thermocrinis ruber
187 517291 517452 + NZ_AP018738.1 Ferriphaselus amnicola
188 2327527 2327688 + NZ_CP041660.1 Catenovulum sediminis
189 2893968 2894129 - NZ_AP018437.1 Pelolinea submarina
190 4413053 4413235 - NC_010524.1 Leptothrix cholodnii SP-6
191 2025758 2025940 + NZ_CP040882.1 Sutterella faecalis
192 3639557 3639715 - NC_008825.1 Methylibium petroleiphilum PM1
193 4411771 4411956 - NZ_CP016440.1 Bordetella pseudohinzii
194 1550375 1550560 - NZ_CP021395.1 Bordetella hinzii
195 430378 430542 + NZ_AP018721.1 Sulfuritortus calidifontis
196 996273 996452 - NZ_CP072425.1 Pseudoalteromonas viridis
197 3239868 3240050 - NZ_CP040058.1 Anaerostipes rhamnosivorans
198 372653 372835 + NZ_CP036345.1 Anaerostipes caccae L1-92
199 312512 312691 + NC_015589.1 Desulfotomaculum ruminis DSM 2154
200 240417 240596 + NC_009253.1 Desulfotomaculum reducens MI-1
201 509618 509773 + NZ_CP030280.1 Blautia argi
202 1153703 1153891 + NZ_LR134313.1 Neisseria canis
203 1264493 1264660 - NZ_AP022596.1 Mycolicibacterium helvum
204 2514891 2515058 + NZ_AP022595.1 Mycolicibacterium sarraceniae
205 8293453 8293635 + NZ_AP022870.1 Phytohabitans flavus
206 321476 321634 + NC_013216.1 Desulfofarcimen acetoxidans DSM 771
207 4381490 4381672 + NZ_AP022871.1 Phytohabitans suffuscus
208 3274572 3274760 - NZ_CP041025.1 Paremcibacter congregatus
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Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NZ_CP048044.1
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF00253.23 0.98 204 1899.0 same-strand Ribosomal protein S14p/S29e
2 PF00410.21 1.0 208 1485.0 same-strand Ribosomal protein S8
3 PF00347.25 1.0 207 931.0 same-strand Ribosomal protein L6
4 PF00861.24 0.99 206 558.5 same-strand Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
5 PF03719.17 1.0 207 15 same-strand Ribosomal protein S5, C-terminal domain
6 PF00333.22 1.0 208 15.0 same-strand Ribosomal protein S5, N-terminal domain
7 PF00828.21 0.99 206 12.0 same-strand Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
8 PF00344.22 0.97 201 470 same-strand SecY
9 PF00416.24 0.75 155 2221 same-strand Ribosomal protein S13/S18
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