* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_012846.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF07411.14
|
1.0
|
8
|
2623.0
|
opposite-strand
|
Domain of unknown function (DUF1508)
|
2
|
PF01381.24
|
1.0
|
8
|
-76
|
opposite-strand
|
Helix-turn-helix
|
3
|
PF04402.16
|
1.0
|
8
|
1615.5
|
opposite-strand
|
Protein of unknown function (DUF541)
|
4
|
PF03692.17
|
0.88
|
7
|
2302
|
same-strand
|
Putative zinc- or iron-chelating domain
|
5
|
PF04546.15
|
0.88
|
7
|
3377
|
same-strand
|
Sigma-70, non-essential region
|
6
|
PF04539.18
|
0.88
|
7
|
3377
|
same-strand
|
Sigma-70 region 3
|
7
|
PF04542.16
|
0.88
|
7
|
3377
|
same-strand
|
Sigma-70 region 2
|
8
|
PF04545.18
|
0.88
|
7
|
3377
|
same-strand
|
Sigma-70, region 4
|
9
|
PF00140.22
|
0.88
|
7
|
3377
|
same-strand
|
Sigma-70 factor, region 1.2
|
10
|
PF08275.13
|
0.88
|
7
|
5780
|
same-strand
|
DNA primase catalytic core, N-terminal domain
|
11
|
PF01807.22
|
0.88
|
7
|
5780
|
same-strand
|
CHC2 zinc finger
|
12
|
PF13662.8
|
0.88
|
7
|
5780
|
same-strand
|
Toprim domain
|
13
|
PF13155.8
|
0.88
|
7
|
5780
|
same-strand
|
Toprim-like
|
14
|
PF13362.8
|
0.62
|
5
|
6170
|
same-strand
|
Toprim domain
|
15
|
PF01751.24
|
0.88
|
7
|
5780
|
same-strand
|
Toprim domain
|
16
|
PF00924.20
|
0.75
|
6
|
7764.5
|
opposite-strand
|
Mechanosensitive ion channel
|
17
|
PF03979.16
|
0.75
|
6
|
3281.0
|
same-strand
|
Sigma-70 factor, region 1.1
|
++ More..