Result : EXP02339
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP02339 |
| NCBI Accession ID | NC_005956.1 |
| Organism | Bartonella henselae str. Houston-1 |
| Left | 318344 |
| Right | 318478 |
| Strand | + |
| Nucleotide Sequence | ATGTTTGTGATAAGTTTAATGGCTTCCATTGCTTGGAGTGTTCCAATGACTCCGGGTAAAGCGCCGATAATTCCAGTTTCAGCACATGTTGAGAGAGTGCCGGGAGCTGGTGGATTTGGGAATAAATCACGATAG |
| Sequence | MFVISLMASIAWSVPMTPGKAPIIPVSAHVERVPGAGGFGNKSR |
| Source of smORF | Protein-level |
| Function | The localisation of the protein was found to be: Inner Membrane exclusive. Pubmed:29141959 |
| Pubmed ID | 29141959 |
| Domain | |
| Functional Category | Manually curated function from literature |
| Uniprot ID | |
| ORF Length (Amino Acid) | 44 |
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| Conservation Analysis |
No. of Species: 104
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 317643 | 317777 | + | NZ_HG965802.1 | Bartonella henselae |
| 2 | 527573 | 527707 | + | NZ_LR134529.1 | Bartonella vinsonii |
| 3 | 201452 | 201580 | + | NC_014932.1 | Bartonella clarridgeiae 73 |
| 4 | 192681 | 192809 | + | NC_020300.1 | Bartonella australis Aust/NH1 |
| 5 | 199630 | 199764 | + | NZ_LR134527.1 | Bartonella elizabethae |
| 6 | 324926 | 325060 | + | NC_010161.1 | Bartonella tribocorum CIP 105476 |
| 7 | 634697 | 634831 | + | NZ_CP031843.2 | Bartonella kosoyi |
| 8 | 1242115 | 1242231 | + | NZ_CP058235.1 | Bartonella alsatica |
| 9 | 664858 | 664986 | + | NZ_CP010401.1 | Bartonella ancashensis |
| 10 | 172160 | 172294 | + | NZ_CP031844.2 | Bartonella krasnovii |
| 11 | 290732 | 290866 | + | NZ_AP019773.1 | Bartonella quintana |
| 12 | 1276602 | 1276718 | - | NC_008783.1 | Bartonella bacilliformis KC583 |
| 13 | 2955975 | 2956109 | - | NZ_CP054836.1 | Oricola thermophila |
| 14 | 1251208 | 1251327 | - | NZ_CP011971.1 | Steroidobacter denitrificans |
| 15 | 3510120 | 3510254 | - | NZ_CP023067.1 | Ensifer sojae CCBAU 05684 |
| 16 | 2569797 | 2569925 | - | NZ_CP053856.1 | Rhizobium pusense |
| 17 | 2683021 | 2683149 | - | NZ_CP061003.1 | Agrobacterium tumefaciens |
| 18 | 5442 | 5576 | - | NC_015675.1 | Mesorhizobium opportunistum WSM2075 |
| 19 | 687970 | 688089 | + | NZ_CP036532.1 | Roseitalea porphyridii |
| 20 | 731177 | 731305 | + | NZ_CP015064.1 | Mesorhizobium ciceri biovar biserrulae |
| 21 | 4735 | 4869 | - | NZ_CP033507.1 | Mesorhizobium jarvisii |
| 22 | 3392913 | 3393041 | - | NZ_CP059896.1 | Ciceribacter thiooxidans |
| 23 | 150251 | 150379 | + | NZ_CP013500.1 | Rhizobium esperanzae |
| 24 | 1052750 | 1052866 | - | NC_015387.1 | Marinithermus hydrothermalis DSM 14884 |
| 25 | 4602 | 4730 | - | NZ_CP064063.1 | Brucella anthropi |
| 26 | 151640 | 151774 | + | NC_020059.1 | Rhizobium tropici CIAT 899 |
| 27 | 5627 | 5761 | - | NC_010103.1 | Brucella canis ATCC 23365 |
| 28 | 5627 | 5761 | - | NC_004310.3 | Brucella suis 1330 |
| 29 | 75083 | 75211 | + | NZ_LR723670.1 | Pseudorhizobium flavum |
| 30 | 3999067 | 3999195 | + | NZ_FO082820.1 | Pseudorhizobium banfieldiae |
| 31 | 5628 | 5762 | - | NC_009505.1 | Brucella ovis ATCC 25840 |
| 32 | 5627 | 5761 | - | NC_013119.1 | Brucella microti CCM 4915 |
| 33 | 1997590 | 1997724 | + | NC_003317.1 | Brucella melitensis bv. 1 str. 16M |
| 34 | 1998805 | 1998939 | + | NC_022905.1 | Brucella ceti TE10759-12 |
| 35 | 5627 | 5761 | - | NC_007618.1 | Brucella abortus 2308 |
| 36 | 580289 | 580423 | + | NZ_LT605585.1 | Brucella inopinata |
| 37 | 4422522 | 4422656 | + | NZ_HG938353.1 | Neorhizobium galegae bv. orientalis str. HAMBI 540 |
| 38 | 587467 | 587595 | - | NZ_CP034940.1 | Halorubrum ezzemoulense |
| 39 | 4640 | 4759 | - | NZ_CP022604.1 | [Ochrobactrum] quorumnocens |
| 40 | 148533 | 148661 | + | NZ_CP020906.1 | Rhizobium etli |
| 41 | 1968907 | 1969035 | + | NZ_CP071454.1 | Rhizobium lentis |
| 42 | 146547 | 146675 | + | NZ_CP071612.1 | Rhizobium bangladeshense |
| 43 | 3893097 | 3893231 | + | NZ_CP050296.1 | Mesorhizobium huakuii |
| 44 | 740475 | 740615 | - | NZ_LT593929.1 | Propionibacterium freudenreichii |
| 45 | 3803563 | 3803682 | + | NZ_CP015880.1 | Ensifer adhaerens |
| 46 | 1013884 | 1014012 | - | NZ_CP049241.1 | Rhizobium pseudoryzae |
| 47 | 5268 | 5402 | - | NC_019973.1 | Mesorhizobium australicum WSM2073 |
| 48 | 825659 | 825793 | - | NZ_CP049250.1 | Rhizobium rhizoryzae |
| 49 | 2763482 | 2763616 | + | NZ_CP014766.1 | Pontibacter akesuensis |
| 50 | 1637424 | 1637558 | + | NZ_CP015318.1 | Mesorhizobium amorphae CCNWGS0123 |
| 51 | 124714 | 124833 | - | NZ_CP006877.1 | Rhizobium gallicum bv. gallicum R602sp |
| 52 | 156224 | 156367 | + | NC_014664.1 | Rhodomicrobium vannielii ATCC 17100 |
| 53 | 2158209 | 2158337 | + | NZ_CP048632.1 | Rhizobium oryzihabitans |
| 54 | 46871 | 47005 | + | NZ_LT960614.1 | Hartmannibacter diazotrophicus |
| 55 | 2146208 | 2146342 | + | NZ_CP053923.1 | Defluviicoccus vanus |
| 56 | 2626003 | 2626131 | + | NZ_CP033724.1 | Clavibacter michiganensis subsp. michiganensis |
| 57 | 56628 | 56762 | - | NC_017079.1 | Caldilinea aerophila DSM 14535 = NBRC 104270 |
| 58 | 1738803 | 1738922 | - | NZ_CP063458.1 | Humisphaera borealis |
| 59 | 1735643 | 1735759 | + | NZ_CP033914.1 | Chryseobacterium shandongense |
| 60 | 719713 | 719847 | - | NZ_CP051774.1 | Luteolibacter luteus |
| 61 | 4783047 | 4783163 | - | NZ_CP010429.1 | Spirosoma radiotolerans |
| 62 | 3838826 | 3838945 | + | NC_015564.1 | Hoyosella subflava DQS3-9A1 |
| 63 | 753378 | 753494 | + | NZ_CP007142.1 | Gynuella sunshinyii YC6258 |
| 64 | 3957757 | 3957885 | + | NZ_CP015421.1 | Rhodovulum sulfidophilum |
| 65 | 1751815 | 1751931 | + | NZ_CP051181.1 | Thalassobius gelatinovorus |
| 66 | 347574 | 347690 | + | NC_014643.1 | Rothia dentocariosa ATCC 17931 |
| 67 | 130290 | 130418 | + | NZ_CP026947.1 | Corynebacterium yudongzhengii |
| 68 | 3557157 | 3557273 | + | NZ_LT906450.1 | Rhodococcus rhodochrous |
| 69 | 286455 | 286583 | - | NZ_CP012507.1 | Kocuria palustris |
| 70 | 422675 | 422803 | - | NC_003911.12 | Ruegeria pomeroyi DSS-3 |
| 71 | 2228392 | 2228511 | - | NZ_CP011801.1 | Nitrospira moscoviensis |
| 72 | 2210441 | 2210569 | + | NZ_CP032624.1 | Gryllotalpicola protaetiae |
| 73 | 3410452 | 3410580 | + | NZ_CP053562.1 | Thioclava electrotropha |
| 74 | 1171391 | 1171510 | + | NC_011832.1 | Methanosphaerula palustris E1-9c |
| 75 | 599040 | 599156 | - | NZ_CP034348.1 | Roseovarius faecimaris |
| 76 | 3412549 | 3412677 | + | NZ_CP019437.1 | Thioclava nitratireducens |
| 77 | 1139090 | 1139212 | + | NZ_CP058595.1 | Costertonia aggregata |
| 78 | 2186483 | 2186611 | - | NZ_CP033897.1 | Corynebacterium gerontici |
| 79 | 3163026 | 3163160 | - | NZ_CP017940.1 | Phyllobacterium zundukense |
| 80 | 2361499 | 2361615 | + | NZ_CP033929.1 | Chryseobacterium indoltheticum |
| 81 | 383916 | 384044 | - | NZ_CP034412.1 | Glutamicibacter creatinolyticus |
| 82 | 4263560 | 4263688 | - | NZ_LS483468.1 | Rhodococcus coprophilus |
| 83 | 3634355 | 3634483 | + | NC_015730.1 | Roseobacter litoralis Och 149 |
| 84 | 3901926 | 3902042 | + | NC_009719.1 | Parvibaculum lavamentivorans DS-1 |
| 85 | 598464 | 598583 | - | NZ_CP012661.1 | Defluviimonas alba |
| 86 | 1129863 | 1130006 | - | NZ_CP015961.1 | Dietzia timorensis |
| 87 | 2574270 | 2574398 | + | NZ_CP014228.1 | Actinomyces radicidentis |
| 88 | 2941575 | 2941694 | - | NZ_CP046908.1 | Stappia indica |
| 89 | 49855 | 49977 | - | NZ_CP009245.1 | Corynebacterium aquilae DSM 44791 |
| 90 | 1291754 | 1291888 | - | NZ_CP017146.1 | Marisediminicola antarctica |
| 91 | 1369061 | 1369189 | + | NZ_CP020470.1 | Rhodobacter blasticus |
| 92 | 2642836 | 2642952 | - | NZ_CP011129.1 | Lysobacter antibioticus |
| 93 | 3428012 | 3428131 | + | NZ_CP054599.1 | Sulfitobacter pseudonitzschiae |
| 94 | 1339394 | 1339513 | - | NC_014831.1 | Thermaerobacter marianensis DSM 12885 |
| 95 | 753764 | 753883 | - | NC_014248.1 | 'Nostoc azollae' 0708 |
| 96 | 636370 | 636489 | - | NC_017448.1 | Fibrobacter succinogenes subsp. succinogenes S85 |
| 97 | 2271726 | 2271845 | - | NC_019748.1 | Stanieria cyanosphaera PCC 7437 |
| 98 | 1239926 | 1240045 | - | NC_019729.1 | Oscillatoria nigro-viridis PCC 7112 |
| 99 | 1900444 | 1900563 | + | NZ_CP041242.1 | Lysobacter alkalisoli |
| 100 | 4100330 | 4100458 | - | NZ_CP036402.1 | Egibacter rhizosphaerae |
| 101 | 1916720 | 1916848 | - | NZ_CP036250.1 | Egicoccus halophilus |
| 102 | 81452 | 81568 | + | NC_020453.1 | Bradyrhizobium oligotrophicum S58 |
| 103 | 2556454 | 2556588 | + | NC_004757.1 | Nitrosomonas europaea ATCC 19718 |
| 104 | 1074790 | 1074906 | - | NZ_CP015453.1 | Dietzia psychralcaliphila |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_HG965802.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00899.23 | 1.0 | 104 | -128 | opposite-strand | ThiF family |
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