Result : B4EN27
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Exodeoxyribonuclease 7 small subunit (EC 3.1.11.6) (Exodeoxyribonuclease VII small subunit) (Exonuclease VII small subunit) |
| NCBI Accession ID | AM747721.1 |
| Organism | Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610) (Burkholderia cepacia (strain J2315)) |
| Left | 999794 |
| Right | 1000087 |
| Strand | + |
| Nucleotide Sequence | ATGGCGAAAACCGCATCCCCAGGCGCCACGCCGCCCGGCAATGGCACCGAACCGTTGCCGGACAATTACGAGATGGCGCTCGCGGAACTCGAGACGCTGGTTGCCCGGATGGAAGGCGGCGCGCTGAGCCTCGAGGATTCACTGGCGGCGTATCGCCGCGGTGCGACCCTCGTTGCGTTTTGCCAACAGCAGCTCGAGAAAGTGGAGCAGCAGGTTCGCGTGCTCGACGGCGCGACGCTGAAGCCGCTTTCGTCCGGAACGGCCGCCACGGACGGCGAAGACGACGATCTATGA |
| Sequence | MAKTASPGATPPGNGTEPLPDNYEMALAELETLVARMEGGALSLEDSLAAYRRGATLVAFCQQQLEKVEQQVRVLDGATLKPLSSGTAATDGEDDDL |
| Source of smORF | Swiss-Prot |
| Function | Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides. {ECO:0000255|HAMAP-Rule:MF_00337}. |
| Pubmed ID | 18931103 |
| Domain | CDD:412547 |
| Functional Category | Others |
| Uniprot ID | B4EN27 |
| ORF Length (Amino Acid) | 97 |
++ More..
| Conservation Analysis |
No. of Species: 58
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 934447 | 934740 | + | NZ_CP013452.1 | Burkholderia cenocepacia |
| 2 | 205735 | 206028 | - | NZ_CP011504.1 | Burkholderia pyrrocinia |
| 3 | 1699177 | 1699470 | - | NZ_CP045236.1 | Burkholderia cepacia |
| 4 | 2536535 | 2536828 | - | NC_007511.1 | Burkholderia lata |
| 5 | 840494 | 840787 | + | NZ_CP013403.1 | Burkholderia metallica |
| 6 | 874324 | 874617 | + | NZ_CP013400.1 | Burkholderia seminalis |
| 7 | 1063130 | 1063423 | + | NZ_CP020738.1 | Paraburkholderia acidophila |
| 8 | 793025 | 793318 | + | NZ_CP013416.1 | Burkholderia ubonensis |
| 9 | 790588 | 790881 | + | NZ_CP013461.1 | Burkholderia stagnalis |
| 10 | 1618220 | 1618513 | - | NZ_CP009793.1 | Burkholderia dolosa AU0158 |
| 11 | 725257 | 725538 | + | NZ_CP009831.1 | Burkholderia multivorans ATCC BAA-247 |
| 12 | 715960 | 716253 | + | NC_007650.1 | Burkholderia thailandensis E264 |
| 13 | 1789336 | 1789629 | - | NZ_CP009728.1 | Burkholderia mallei |
| 14 | 262770 | 263063 | + | NZ_CP008782.1 | Burkholderia pseudomallei |
| 15 | 1177826 | 1178119 | + | NZ_CP009556.1 | Burkholderia oklahomensis C6786 |
| 16 | 404631 | 404924 | - | NZ_CP035901.1 | Burkholderia glumae |
| 17 | 2755057 | 2755350 | - | NZ_CP002581.1 | Burkholderia plantarii |
| 18 | 172810 | 173118 | + | NZ_CP066076.1 | Paraburkholderia ginsengisoli |
| 19 | 3050920 | 3051228 | - | NZ_CP031466.1 | Paraburkholderia caffeinilytica |
| 20 | 1359837 | 1360145 | + | NZ_CP024942.1 | Paraburkholderia terricola |
| 21 | 2209794 | 2210102 | + | NZ_CP022990.1 | Paraburkholderia aromaticivorans |
| 22 | 234415 | 234723 | + | NC_007952.1 | Paraburkholderia xenovorans LB400 |
| 23 | 2677703 | 2678020 | - | NZ_CP026112.1 | Paraburkholderia terrae |
| 24 | 3119692 | 3120000 | - | NC_010676.1 | Paraburkholderia phytofirmans PsJN |
| 25 | 2891988 | 2892296 | + | NZ_CP024935.1 | Paraburkholderia graminis |
| 26 | 1233867 | 1234202 | - | NC_021294.1 | Caballeronia insecticola |
| 27 | 1158314 | 1158631 | - | NZ_CP015959.1 | Paraburkholderia caribensis |
| 28 | 923045 | 923362 | - | NC_010623.1 | Paraburkholderia phymatum STM815 |
| 29 | 1739957 | 1740271 | + | NZ_CP049135.1 | Paraburkholderia tropica |
| 30 | 905033 | 905305 | + | NC_014722.1 | Mycetohabitans rhizoxinica HKI 454 |
| 31 | 1668505 | 1668819 | - | NZ_CP046910.1 | Paraburkholderia acidiphila |
| 32 | 3684957 | 3685229 | - | NZ_CP011253.3 | Pandoraea oxalativorans |
| 33 | 3307377 | 3307649 | - | NZ_CP011807.3 | Pandoraea faecigallinarum |
| 34 | 1773929 | 1774201 | + | NZ_LT906435.1 | Pandoraea sputorum |
| 35 | 3651797 | 3652066 | - | NZ_CP013481.2 | Pandoraea apista |
| 36 | 3666464 | 3666733 | - | NZ_CP010897.2 | Pandoraea vervacti |
| 37 | 2707211 | 2707480 | + | NZ_CP047385.1 | Pandoraea fibrosis |
| 38 | 3811883 | 3812149 | - | NZ_CP010310.2 | Pandoraea pulmonicola |
| 39 | 3265221 | 3265511 | - | NZ_CP062803.1 | Cupriavidus basilensis |
| 40 | 3434002 | 3434274 | - | NC_023018.2 | Pandoraea pnomenusa |
| 41 | 1772454 | 1772720 | + | NZ_CP013480.3 | Pandoraea norimbergensis |
| 42 | 1230173 | 1230463 | + | NZ_AP018150.1 | Mycoavidus cysteinexigens |
| 43 | 2025523 | 2025795 | + | NZ_CP016172.1 | Bordetella flabilis |
| 44 | 4343375 | 4343641 | + | NZ_LR134302.1 | Achromobacter spanius |
| 45 | 1721409 | 1721672 | + | NZ_LT907988.1 | Orrella dioscoreae |
| 46 | 3208904 | 3209170 | - | NC_010170.1 | Bordetella petrii |
| 47 | 5227687 | 5227944 | + | NZ_CP047650.1 | Xylophilus rhododendri |
| 48 | 131486 | 131752 | + | NZ_CP053986.1 | Achromobacter denitrificans |
| 49 | 4655221 | 4655487 | - | NZ_CP038034.1 | Achromobacter insolitus |
| 50 | 667994 | 668260 | + | NC_018518.1 | Bordetella pertussis 18323 |
| 51 | 1951278 | 1951544 | + | NZ_AP019378.1 | Bordetella parapertussis |
| 52 | 1680602 | 1680868 | + | NZ_LR134326.1 | Bordetella bronchiseptica |
| 53 | 1654358 | 1654636 | - | NZ_CP022987.1 | Pusillimonas thiosulfatoxidans |
| 54 | 2745743 | 2745982 | - | NZ_CP064338.1 | Schlegelella thermodepolymerans |
| 55 | 740435 | 740692 | + | NZ_CP029210.1 | Aquabacterium olei |
| 56 | 3529276 | 3529515 | - | NZ_CP053073.1 | Usitatibacter palustris |
| 57 | 3097728 | 3097988 | - | NZ_CP011568.3 | Pandoraea thiooxydans |
| 58 | 2621446 | 2621718 | + | NZ_CP023406.1 | Luteimonas chenhongjianii |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP013452.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01738.20 | 0.69 | 40 | 2523.0 | same-strand | Dienelactone hydrolase family |
| 2 | PF00581.22 | 0.79 | 46 | 1574.0 | opposite-strand | Rhodanese-like domain |
| 3 | PF00848.21 | 0.95 | 55 | 271 | opposite-strand | Ring hydroxylating alpha subunit (catalytic domain) |
| 4 | PF00355.28 | 0.83 | 48 | 271.0 | opposite-strand | Rieske [2Fe-2S] domain |
| 5 | PF00348.19 | 1.0 | 58 | -3.0 | same-strand | Polyprenyl synthetase |
| 6 | PF13292.8 | 0.98 | 57 | 965 | same-strand | 1-deoxy-D-xylulose-5-phosphate synthase |
| 7 | PF02779.26 | 0.98 | 57 | 965 | same-strand | Transketolase, pyrimidine binding domain |
| 8 | PF02780.22 | 0.98 | 57 | 965 | same-strand | Transketolase, C-terminal domain |
| 9 | PF02649.16 | 0.93 | 54 | 3025.0 | same-strand | Type I GTP cyclohydrolase folE2 |
| 10 | PF00814.27 | 0.72 | 42 | 4012.0 | opposite-strand | tRNA N6-adenosine threonylcarbamoyltransferase |
| 11 | PF03486.16 | 0.67 | 39 | 5206 | same-strand | HI0933-like protein |
++ More..