Result : EXP02257
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP02257 |
| NCBI Accession ID | NC_009641.1 |
| Organism | Staphylococcus aureus subsp. aureus str. Newman |
| Left | 897950 |
| Right | 898129 |
| Strand | + |
| Nucleotide Sequence | TTGATTAAAAGTATTAGTAGACAAAAAAGATGCACCCGTATAAATGGTACGACTATTGATTTTAAGCAATCATTAATGGGTGGCGGTTTCCAAATCGACAATCCTAATGCAATTGCTTCATGTGGCTGTGGTAGTTCATTTAGAACTGCAAAAGTTGCAGGTAATCCTGAAAATTGCTAA |
| Sequence | LIKSISRQKRCTRINGTTIDFKQSLMGGGFQIDNPNAIASCGCGSSFRTAKVAGNPENC |
| Source of smORF | Protein-level |
| Function | |
| Pubmed ID | 34061833 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 59 |
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| Conservation Analysis |
No. of Species: 66
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 861031 | 861222 | + | NZ_LT906460.1 | Staphylococcus simiae |
| 2 | 1876222 | 1876398 | - | NZ_LR134242.1 | Staphylococcus warneri |
| 3 | 2102957 | 2103133 | + | NC_022737.1 | Staphylococcus pasteuri SP1 |
| 4 | 610527 | 610676 | + | NZ_CP013911.1 | Staphylococcus haemolyticus |
| 5 | 1863619 | 1863789 | + | NZ_CP020773.1 | Staphylococcus lutrae |
| 6 | 1956609 | 1956785 | - | NZ_CP035288.1 | Staphylococcus epidermidis |
| 7 | 1753525 | 1753695 | - | NZ_CP065712.1 | Staphylococcus auricularis |
| 8 | 1374313 | 1374477 | + | NZ_CP027770.1 | Staphylococcus felis |
| 9 | 1015149 | 1015325 | - | NZ_CP065729.1 | Macrococcus caseolyticus |
| 10 | 3991189 | 3991359 | - | NZ_CP053989.1 | Niallia circulans |
| 11 | 3247666 | 3247836 | - | NC_006270.3 | Bacillus licheniformis DSM 13 = ATCC 14580 |
| 12 | 3472794 | 3472964 | - | NZ_CP023665.1 | Bacillus paralicheniformis |
| 13 | 1307849 | 1308013 | - | NZ_CP019573.1 | Abyssicoccus albus |
| 14 | 1956753 | 1956917 | - | NZ_CP030926.1 | Peribacillus butanolivorans |
| 15 | 924101 | 924313 | + | NZ_CP013659.2 | Planococcus rifietoensis |
| 16 | 3652249 | 3652419 | - | NZ_LT603683.1 | Bacillus glycinifermentans |
| 17 | 1205641 | 1205808 | + | NZ_CP016539.2 | Planococcus plakortidis |
| 18 | 1180701 | 1180868 | + | NZ_CP059540.1 | Planococcus maritimus |
| 19 | 1170202 | 1170369 | + | NZ_CP016538.2 | Planococcus maritimus |
| 20 | 728242 | 728406 | + | NZ_CP012502.1 | Bacillus beveridgei |
| 21 | 2429381 | 2429551 | - | NZ_CP009416.1 | Jeotgalibacillus malaysiensis |
| 22 | 3090534 | 3090728 | - | NZ_CP051464.1 | Bacillus mojavensis |
| 23 | 2958774 | 2958968 | + | NZ_CP029364.1 | Bacillus halotolerans |
| 24 | 3362915 | 3363070 | + | NZ_CP008876.1 | Terribacillus goriensis |
| 25 | 345793 | 345963 | + | NZ_CP068061.1 | Mammaliicoccus vitulinus |
| 26 | 3100468 | 3100662 | - | NZ_CP048852.1 | Bacillus tequilensis |
| 27 | 3208790 | 3208954 | - | NZ_CP015378.1 | Fictibacillus phosphorivorans |
| 28 | 3975785 | 3975949 | - | NZ_CP042593.1 | Bacillus dafuensis |
| 29 | 3059767 | 3059979 | - | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 30 | 101315 | 101512 | + | NZ_CP013862.1 | Lentibacillus amyloliquefaciens |
| 31 | 266191 | 266361 | + | NZ_CP038012.1 | Sporosarcina pasteurii |
| 32 | 864668 | 864835 | + | NZ_CP018058.1 | Geobacillus thermocatenulatus |
| 33 | 2033261 | 2033407 | + | NZ_CP048209.1 | Paenibacillus lycopersici |
| 34 | 5032536 | 5032691 | - | NZ_AP019400.1 | Cohnella abietis |
| 35 | 1650692 | 1650874 | - | NZ_CP048286.1 | Paenibacillus rhizovicinus |
| 36 | 21558 | 21710 | - | NZ_CP011388.1 | Paenibacillus swuensis |
| 37 | 1007760 | 1007924 | + | NZ_AP017312.1 | Aneurinibacillus soli |
| 38 | 2064919 | 2065098 | - | NZ_LR134338.1 | Brevibacillus brevis |
| 39 | 2287046 | 2287243 | - | NC_010556.1 | Exiguobacterium sibiricum 255-15 |
| 40 | 2314442 | 2314588 | - | NZ_CP039710.1 | Thermoactinomyces vulgaris |
| 41 | 6689730 | 6689876 | + | NZ_CP045293.1 | Paenibacillus guangzhouensis |
| 42 | 3289994 | 3290143 | - | NZ_AP019308.1 | Paenibacillus baekrokdamisoli |
| 43 | 1159178 | 1159330 | + | NZ_AP021853.1 | Sporolactobacillus terrae |
| 44 | 1100917 | 1101108 | + | NC_006177.1 | Symbiobacterium thermophilum IAM 14863 |
| 45 | 300223 | 300405 | - | NC_016641.1 | Paenibacillus terrae HPL-003 |
| 46 | 5077926 | 5078111 | - | NZ_CP043611.1 | Paenibacillus antarcticus |
| 47 | 5733314 | 5733496 | - | NZ_CP009428.1 | Paenibacillus odorifer |
| 48 | 2555814 | 2555993 | - | NZ_CP054614.1 | Paenibacillus barcinonensis |
| 49 | 1199145 | 1199327 | - | NZ_CP045298.1 | Paenibacillus brasilensis |
| 50 | 1054381 | 1054563 | + | NZ_CP020028.1 | Paenibacillus kribbensis |
| 51 | 5367083 | 5367262 | - | NZ_CP034346.1 | Paenibacillus lutimineralis |
| 52 | 5948977 | 5949159 | - | NZ_CP009287.1 | Paenibacillus graminis |
| 53 | 1969476 | 1969643 | + | NZ_CP034248.1 | Paenibacillus lentus |
| 54 | 699652 | 699834 | - | NZ_CP048429.1 | Paenibacillus jilunlii |
| 55 | 4294476 | 4294646 | - | NZ_CP004078.1 | Paenibacillus sabinae T27 |
| 56 | 712047 | 712229 | - | NZ_CP068595.1 | Paenibacillus sonchi |
| 57 | 6568397 | 6568579 | - | NZ_LN831776.1 | Paenibacillus riograndensis SBR5 |
| 58 | 3311556 | 3311714 | - | NZ_CP019659.1 | Paenibacillus larvae subsp. larvae |
| 59 | 5770072 | 5770254 | - | NZ_CP021780.1 | Paenibacillus donghaensis |
| 60 | 6855746 | 6855928 | - | NZ_CP009285.1 | Paenibacillus borealis |
| 61 | 1991742 | 1991924 | - | NZ_CP045295.1 | Paenibacillus cellulositrophicus |
| 62 | 4650993 | 4651163 | - | NZ_CP009286.1 | Paenibacillus stellifer |
| 63 | 1583234 | 1583410 | - | NZ_CP041217.1 | Saccharibacillus brassicae |
| 64 | 4270864 | 4271046 | + | NZ_CP016809.1 | Paenibacillus ihbetae |
| 65 | 4888525 | 4888710 | - | NZ_CP013023.1 | Paenibacillus bovis |
| 66 | 10138355 | 10138522 | + | NZ_CP035758.1 | Ktedonosporobacter rubrisoli |
| 67 | 1535618 | 1535803 | + | NC_011959.1 | Thermomicrobium roseum DSM 5159 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LT906460.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01106.19 | 0.76 | 50 | 3077 | opposite-strand | NifU-like domain |
| 2 | PF07992.16 | 0.91 | 60 | 1670 | opposite-strand | Pyridine nucleotide-disulphide oxidoreductase |
| 3 | PF00070.29 | 0.89 | 59 | 1654.0 | opposite-strand | Pyridine nucleotide-disulphide oxidoreductase |
| 4 | PF07293.13 | 0.85 | 56 | 2575 | same-strand | Protein of unknown function (DUF1450) |
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