Result : EXP02241
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP02241 |
| NCBI Accession ID | CP001363.1 |
| Organism | Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S |
| Left | 3849551 |
| Right | 3849841 |
| Strand | + |
| Nucleotide Sequence | ATGGAATATAAAGATCCGATGTTTGAGCTGCTGAGCAGCCTGGAACAAATTGTTTTTAAAGATGAAACGCGAAAGATCACCCTGACGCAAAAACCCAATCCTTTTACCGAATTTGAACAGTTACGGAGAGGAACGGGACTAAAAACAGATGAATTCGCCAGAGCGCTGGGCGTAACGGTTGCCATGGTTCAGGAATGGGAATCGAAACGCGAAAAACCCACGCCAGCAGAGCTTAAATTAATGCGCCTGATACAGGCGAACCCACGCTTAAGTAAGCAATTGATGGAGTAA |
| Sequence | MEYKDPMFELLSSLEQIVFKDETRKITLTQKPNPFTEFEQLRRGTGLKTDEFARALGVTVAMVQEWESKREKPTPAELKLMRLIQANPRLSKQLME |
| Source of smORF | Protein-level |
| Function | The protein encoded by this ORF is under the control of the RNA Polymerase sigma factor RpoS which plays a role in general stress response. It is abundantly expressed in the stationary phase. Pubmed:28522802 The ORF matches to the profile of cl22854. Profile Description: N/A. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254. |
| Pubmed ID | 28522802 |
| Domain | CDD:419869 |
| Functional Category | Manually curated function from literature |
| Uniprot ID | P0A9V7 |
| ORF Length (Amino Acid) | 96 |
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| Conservation Analysis |
No. of Species: 64
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3835872 | 3836162 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 2 | 1679949 | 1680239 | + | NZ_CP053416.1 | Salmonella bongori |
| 3 | 2469640 | 2469930 | + | NZ_CP033744.1 | Citrobacter freundii |
| 4 | 1406148 | 1406438 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 5 | 2590116 | 2590406 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 6 | 4602534 | 4602824 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 7 | 3602207 | 3602497 | - | NZ_CP038469.1 | Citrobacter tructae |
| 8 | 267702 | 267992 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 9 | 4215698 | 4215988 | + | NZ_LR134340.1 | Escherichia marmotae |
| 10 | 185255 | 185542 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 11 | 3690348 | 3690638 | + | NZ_AP014857.1 | Escherichia albertii |
| 12 | 189036 | 189323 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 13 | 2413178 | 2413465 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 14 | 203930 | 204217 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 15 | 217212 | 217499 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 16 | 147090 | 147380 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 17 | 175133 | 175420 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 18 | 4850647 | 4850940 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 19 | 3910835 | 3911125 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 20 | 3719478 | 3719768 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 21 | 4467177 | 4467467 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 22 | 667108 | 667401 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 23 | 4483290 | 4483580 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 24 | 2688935 | 2689222 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 25 | 3348887 | 3349174 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 26 | 196517 | 196804 | - | NC_015968.1 | Enterobacter soli |
| 27 | 1843768 | 1844058 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 28 | 3416125 | 3416412 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 29 | 2641628 | 2641918 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 30 | 4615423 | 4615713 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 31 | 4413410 | 4413700 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 32 | 172237 | 172530 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 33 | 229137 | 229427 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 34 | 2952041 | 2952334 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 35 | 3306088 | 3306381 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 36 | 3580199 | 3580492 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 37 | 5097189 | 5097479 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 38 | 203739 | 204029 | - | NZ_CP054254.1 | Klebsiella variicola |
| 39 | 258219 | 258512 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 40 | 189386 | 189676 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 41 | 3948561 | 3948854 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 42 | 252114 | 252404 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 43 | 4219529 | 4219822 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 44 | 5151576 | 5151869 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 45 | 5104756 | 5105043 | - | NZ_CP023525.1 | Cedecea neteri |
| 46 | 170753 | 171046 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 47 | 1512291 | 1512581 | + | NZ_CP026047.1 | Raoultella planticola |
| 48 | 4706980 | 4707267 | - | NZ_LR134201.1 | Cedecea lapagei |
| 49 | 4697119 | 4697412 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 50 | 210394 | 210684 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 51 | 4104495 | 4104788 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 52 | 4193046 | 4193339 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 53 | 4285909 | 4286202 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 54 | 193886 | 194176 | - | NZ_CP041247.1 | Raoultella electrica |
| 55 | 186523 | 186813 | - | NZ_CP050508.1 | Raoultella terrigena |
| 56 | 186547 | 186837 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 57 | 3682974 | 3683252 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 58 | 538535 | 538822 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 59 | 3677105 | 3677401 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 60 | 43321 | 43614 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 61 | 3731868 | 3732161 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 62 | 4002770 | 4003066 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 63 | 3980712 | 3981008 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 64 | 4013958 | 4014254 | - | NZ_CP038853.1 | Pantoea vagans |
| 65 | 5003325 | 5003618 | - | NC_014306.1 | Erwinia billingiae Eb661 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP033744.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02826.21 | 0.81 | 52 | 1561 | same-strand | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain |
| 2 | PF00389.32 | 0.81 | 52 | 1561 | same-strand | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain |
| 3 | PF11254.10 | 0.92 | 59 | 404.5 | opposite-strand | Protein of unknown function (DUF3053) |
| 4 | PF02092.19 | 0.88 | 56 | 1899 | opposite-strand | Glycyl-tRNA synthetase beta subunit |
| 5 | PF05746.17 | 0.88 | 56 | 1899 | opposite-strand | DALR anticodon binding domain |
| 6 | PF02091.17 | 0.75 | 48 | 3895.0 | opposite-strand | Glycyl-tRNA synthetase alpha subunit |
| 7 | PF00294.26 | 0.67 | 43 | 3961 | same-strand | pfkB family carbohydrate kinase |
| 8 | PF00083.26 | 0.67 | 43 | 2563 | same-strand | Sugar (and other) transporter |
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