Result : EXP02239
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP02239 |
| NCBI Accession ID | CP001363.1 |
| Organism | Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S |
| Left | 1961534 |
| Right | 1961773 |
| Strand | + |
| Nucleotide Sequence | ATGATGAAAACCAGTGTGCGCATTGGCGCTTTTGAAATCGACGATGCCGAATTACATGGCGAATCGCCGGGGGAGCGAACGTTAACAATCCCCTGTAAATCCGATCCGGATTTATGTATGCAACTGGACGCCTGGGATGCCGAAACCAGCGTTCCCGCCATTCTCAACGGGGAACATTCCGTTTTGTTCCGTACTCATTACGATCCTAAATCTGATGCCTGGGTCATGCGTCTTGCCTGA |
| Sequence | MMKTSVRIGAFEIDDAELHGESPGERTLTIPCKSDPDLCMQLDAWDAETSVPAILNGEHSVLFRTHYDPKSDAWVMRLA |
| Source of smORF | Protein-level |
| Function | The protein encoded by this ORF is under the control of the RNA Polymerase sigma factor RpoS which plays a role in general stress response. It is abundantly expressed in the stationary phase. Pubmed:28522802 The ORF matches to the profile of pfam07351. Profile Description: Protein of unknown function (DUF1480). This family consists of several hypothetical Enterobacterial proteins of around 80 residues in length. The function of this family is unknown. |
| Pubmed ID | 28522802 |
| Domain | CDD:369328 |
| Functional Category | Manually curated function from literature |
| Uniprot ID | P64504 |
| ORF Length (Amino Acid) | 79 |
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| Conservation Analysis |
No. of Species: 88
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1950126 | 1950365 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 2 | 4461846 | 4462085 | + | NZ_CP053416.1 | Salmonella bongori |
| 3 | 4507774 | 4508013 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 4 | 575536 | 575775 | + | NZ_CP033744.1 | Citrobacter freundii |
| 5 | 4166962 | 4167201 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 6 | 2775590 | 2775829 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 7 | 1380482 | 1380721 | + | NZ_CP038469.1 | Citrobacter tructae |
| 8 | 1103309 | 1103548 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 9 | 1854707 | 1854943 | + | NZ_AP014857.1 | Escherichia albertii |
| 10 | 224268 | 224504 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 11 | 1998577 | 1998816 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 12 | 1998122 | 1998361 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 13 | 1795734 | 1795970 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 14 | 1427518 | 1427754 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 15 | 1921780 | 1922016 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 16 | 2523748 | 2523984 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 17 | 1928111 | 1928347 | - | NZ_LR134340.1 | Escherichia marmotae |
| 18 | 1784772 | 1785011 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 19 | 3526139 | 3526378 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 20 | 2238701 | 2238940 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 21 | 3350308 | 3350547 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 22 | 1934887 | 1935126 | - | NZ_CP054254.1 | Klebsiella variicola |
| 23 | 1866869 | 1867108 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 24 | 882859 | 883098 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 25 | 1617762 | 1618001 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 26 | 2901095 | 2901334 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 27 | 2567562 | 2567801 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 28 | 1450917 | 1451156 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 29 | 2608803 | 2609042 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 30 | 5225813 | 5226052 | + | NZ_CP026047.1 | Raoultella planticola |
| 31 | 2051433 | 2051672 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 32 | 2032548 | 2032787 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 33 | 2811856 | 2812095 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 34 | 2812907 | 2813146 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 35 | 1976928 | 1977167 | - | NZ_CP041247.1 | Raoultella electrica |
| 36 | 2329626 | 2329865 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 37 | 2789470 | 2789709 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 38 | 3009765 | 3010004 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 39 | 2691974 | 2692213 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 40 | 4477907 | 4478146 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 41 | 2552927 | 2553166 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 42 | 617355 | 617594 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 43 | 1559635 | 1559874 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 44 | 2526692 | 2526931 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 45 | 677801 | 678040 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 46 | 248824 | 249063 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 47 | 2865728 | 2865967 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 48 | 1953207 | 1953446 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 49 | 2212288 | 2212527 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 50 | 1867855 | 1868094 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 51 | 1903701 | 1903940 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 52 | 2091745 | 2091984 | - | NZ_CP050508.1 | Raoultella terrigena |
| 53 | 2994944 | 2995183 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 54 | 110073 | 110312 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 55 | 3781402 | 3781641 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 56 | 4073928 | 4074167 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 57 | 2743316 | 2743555 | + | NC_015968.1 | Enterobacter soli |
| 58 | 1812843 | 1813082 | - | NZ_LR134201.1 | Cedecea lapagei |
| 59 | 1887027 | 1887266 | - | NZ_CP023525.1 | Cedecea neteri |
| 60 | 1878798 | 1879037 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 61 | 4272821 | 4273060 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 62 | 1808717 | 1808956 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 63 | 2197597 | 2197836 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 64 | 1485430 | 1485669 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 65 | 2886493 | 2886732 | + | NZ_CP071320.1 | Serratia ureilytica |
| 66 | 2224496 | 2224735 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 67 | 5124549 | 5124797 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 68 | 2288645 | 2288884 | - | NZ_LR134494.1 | Serratia quinivorans |
| 69 | 2280027 | 2280266 | - | NZ_LT906479.1 | Serratia ficaria |
| 70 | 1847289 | 1847528 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 71 | 2202724 | 2202963 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 72 | 4399636 | 4399875 | + | NZ_CP007230.1 | Yersinia similis |
| 73 | 4448379 | 4448627 | - | NZ_CP011254.1 | Serratia fonticola |
| 74 | 3880639 | 3880887 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 75 | 200920 | 201162 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 76 | 1839639 | 1839881 | + | NZ_CP067057.1 | Rahnella aceris |
| 77 | 2529449 | 2529691 | + | NZ_CP046293.1 | Yersinia intermedia |
| 78 | 2164013 | 2164261 | - | NZ_CP050150.1 | Hafnia alvei |
| 79 | 884121 | 884363 | + | NZ_CP009787.1 | Yersinia rohdei |
| 80 | 3254149 | 3254391 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 81 | 1997895 | 1998140 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 82 | 3569685 | 3569930 | - | NZ_CP065640.1 | Serratia rubidaea |
| 83 | 604597 | 604839 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 84 | 2579732 | 2579974 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 85 | 1587470 | 1587712 | - | NZ_CP032487.1 | Yersinia hibernica |
| 86 | 2079158 | 2079400 | - | NZ_CP043727.1 | Yersinia canariae |
| 87 | 4153996 | 4154238 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 88 | 3189328 | 3189570 | + | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 89 | 2080466 | 2080708 | - | NC_012962.1 | Photorhabdus asymbiotica |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_003197.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF04352.15 | 0.78 | 69 | 6241.0 | opposite-strand | ProQ/FINO family |
| 2 | PF17516.4 | 0.77 | 68 | 6241 | opposite-strand | ProQ C-terminal domain |
| 3 | PF13185.8 | 0.75 | 66 | 5644 | opposite-strand | GAF domain |
| 4 | PF04403.15 | 0.81 | 71 | 4233.5 | same-strand | Paraquat-inducible protein A |
| 5 | PF02470.22 | 0.81 | 71 | 1632 | same-strand | MlaD protein |
| 6 | PF01189.19 | 0.74 | 65 | 113.5 | same-strand | 16S rRNA methyltransferase RsmB/F |
| 7 | PF17125.7 | 0.74 | 65 | 113.5 | same-strand | N-terminal domain of 16S rRNA methyltransferase RsmF |
| 8 | PF13636.8 | 0.73 | 64 | 113 | same-strand | RNA-binding PUA-like domain of methyltransferase RsmF |
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