Result : B3R0F6
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S20 |
| NCBI Accession ID | CU469464.1 |
| Organism | Phytoplasma mali (strain AT) |
| Left | 172321 |
| Right | 172584 |
| Strand | - |
| Nucleotide Sequence | ATGGCAAATATTAAACAACAAATTAAACGTAATAAAACTAATGAAAAACGTAGATTAAAAAATGTTTCTTTTAAATCATCTGTAAAAACAGCTATTAAAAAATTAAATAAAGCAATTGAAAATAAAAATAAATCAGAAGCTTTATTATTATTAAATTTATCATATAAAAAATTAGATAAAGGTATTTCAAAAAAGGTATATTCTAAAAATTTTGTTTCTAGACATAAATCGAATTTATCTAAGTTAGTTAATAATATAAATTAA |
| Sequence | MANIKQQIKRNKTNEKRRLKNVSFKSSVKTAIKKLNKAIENKNKSEALLLLNLSYKKLDKGISKKVYSKNFVSRHKSNLSKLVNNIN |
| Source of smORF | Swiss-Prot |
| Function | Binds directly to 16S ribosomal RNA. {ECO:0000255|HAMAP-Rule:MF_00500}. |
| Pubmed ID | 18582369 |
| Domain | CDD:412349 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | B3R0F6 |
| ORF Length (Amino Acid) | 87 |
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| Conservation Analysis |
No. of Species: 33
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 794762 | 795022 | - | NC_022538.1 | Acholeplasma palmae J233 |
| 2 | 1102531 | 1102794 | - | NZ_LR215048.1 | Acholeplasma axanthum |
| 3 | 1112711 | 1112971 | + | NC_022549.1 | Acholeplasma brassicae |
| 4 | 925706 | 925966 | + | NC_010163.1 | Acholeplasma laidlawii PG-8A |
| 5 | 611731 | 611991 | + | NZ_LR215050.1 | Acholeplasma hippikon |
| 6 | 2724750 | 2725013 | + | NZ_CP053187.1 | Turicibacter sanguinis |
| 7 | 499305 | 499565 | - | NZ_CP068170.1 | Erysipelatoclostridium ramosum |
| 8 | 158220 | 158480 | + | NZ_AP022583.1 | Mycobacterium noviomagense |
| 9 | 1332656 | 1332916 | - | NZ_CP023445.1 | Actinosynnema pretiosum |
| 10 | 1351197 | 1351457 | - | NC_013093.1 | Actinosynnema mirum DSM 43827 |
| 11 | 1705198 | 1705464 | - | NC_022657.1 | Actinoplanes friuliensis DSM 7358 |
| 12 | 1845479 | 1845739 | + | NZ_CP033081.1 | Glutamicibacter nicotianae |
| 13 | 1984678 | 1984947 | + | NZ_CP031264.1 | Streptacidiphilus bronchialis |
| 14 | 7373497 | 7373757 | + | NC_022116.1 | Amycolatopsis mediterranei RB |
| 15 | 610657 | 610923 | + | NZ_CP008802.1 | Actinotignum schaalii |
| 16 | 1925252 | 1925512 | + | NC_014550.1 | Glutamicibacter arilaitensis Re117 |
| 17 | 3427023 | 3427283 | + | NZ_CP022295.1 | Nocardioides aromaticivorans |
| 18 | 5383227 | 5383487 | - | NZ_CP041146.1 | Nocardioides humi |
| 19 | 156818 | 157069 | - | NC_021284.1 | Spiroplasma syrphidicola EA-1 |
| 20 | 134629 | 134880 | - | NC_021280.1 | Spiroplasma chrysopicola DF-1 |
| 21 | 588829 | 589095 | + | NZ_CP007519.1 | Trueperella pyogenes |
| 22 | 163937 | 164188 | - | NZ_CP011856.1 | Spiroplasma eriocheiris |
| 23 | 734179 | 734430 | + | NZ_CP031088.1 | Spiroplasma phoeniceum P40 |
| 24 | 1305071 | 1305322 | + | NZ_CP010899.1 | Spiroplasma kunkelii CR2-3x |
| 25 | 171683 | 171934 | - | NZ_CP013197.1 | Spiroplasma citri |
| 26 | 549506 | 549751 | - | NZ_CP006934.1 | Spiroplasma sabaudiense Ar-1343 |
| 27 | 133371 | 133622 | - | NZ_CP002082.1 | Spiroplasma mirum ATCC 29335 |
| 28 | 133377 | 133628 | - | NZ_CP011855.1 | Spiroplasma atrichopogonis |
| 29 | 566726 | 566971 | - | NZ_CP031376.1 | Spiroplasma alleghenense |
| 30 | 111125 | 111370 | - | NZ_CP001668.1 | Mycoplasma mycoides subsp. capri str. GM12 |
| 31 | 620334 | 620576 | + | NZ_CP012622.1 | Spiroplasma cantharicola |
| 32 | 460946 | 461191 | + | NZ_CP024965.1 | Entomoplasma somnilux |
| 33 | 945932 | 946177 | + | NC_007633.1 | Mycoplasma capricolum subsp. capricolum ATCC 27343 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR215048.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF06144.15 | 0.64 | 21 | 698 | opposite-strand | DNA polymerase III, delta subunit |
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