* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_007795.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF03840.16
|
1.0
|
2
|
3758.0
|
same-strand
|
Preprotein translocase SecG subunit
|
2
|
PF12146.10
|
1.0
|
2
|
2902.0
|
same-strand
|
Serine aminopeptidase, S33
|
3
|
PF00773.21
|
1.0
|
2
|
496.0
|
same-strand
|
RNB domain
|
4
|
PF17876.3
|
1.0
|
2
|
496.0
|
same-strand
|
Cold shock domain
|
5
|
PF08206.13
|
1.0
|
2
|
496.0
|
same-strand
|
Ribonuclease B OB domain
|
6
|
PF00575.25
|
1.0
|
2
|
496.0
|
same-strand
|
S1 RNA binding domain
|
7
|
PF01668.20
|
1.0
|
2
|
10.0
|
same-strand
|
SmpB protein
|
++ More..