Result : B3QZ92
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L28 |
| NCBI Accession ID | CP001100.1 |
| Organism | Chloroherpeton thalassium (strain ATCC 35110 / GB-78) |
| Left | 1550357 |
| Right | 1550581 |
| Strand | + |
| Nucleotide Sequence | ATGTCAAAGGTTTGTATTTTAACGGGAAAAAAGCATCAATACGGAAATACGGTCTCGCACGCAAATAATCATCGCAGAACTCGTTTTGAGCCGAACATACAGGCAAAGCGCATTTGGCTTGAAGAAGAAAAGCGCTGGGTGAAAGTAAAGCTTTCAGCAAAAGCTATCAAAATTATTTCCAAGCGTGGCACTGCCGAGCTTGCGAAGCTGTTGCAAGGAAAATAA |
| Sequence | MSKVCILTGKKHQYGNTVSHANNHRRTRFEPNIQAKRIWLEEEKRWVKVKLSAKAIKIISKRGTAELAKLLQGK |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00367. Profile Description: Ribosomal L28 family. This model describes bacterial and chloroplast forms of the 50S ribosomal protein L28, a polypeptide about 60 amino acids in length. Mitochondrial homologs differ substantially in architecture (e.g. SP|P36525 from Saccharomyces cerevisiae, which is 258 amino acids long) and are not included. [Protein synthesis, Ribosomal proteins: synthesis and modification] |
| Pubmed ID | |
| Domain | CDD:412338 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | B3QZ92 |
| ORF Length (Amino Acid) | 74 |
++ More..
| Conservation Analysis |
No. of Species: 304
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1550357 | 1550581 | + | NC_011026.1 | Chloroherpeton thalassium ATCC 35110 |
| 2 | 1799274 | 1799492 | + | NC_007512.1 | Pelodictyon luteolum DSM 273 |
| 3 | 586713 | 586931 | - | NC_011059.1 | Prosthecochloris aestuarii DSM 271 |
| 4 | 618284 | 618502 | - | NC_011027.1 | Chlorobaculum parvum NCIB 8327 |
| 5 | 1518211 | 1518429 | + | NC_002932.3 | Chlorobaculum tepidum TLS |
| 6 | 594308 | 594526 | - | NZ_CP017305.1 | Chlorobaculum limnaeum |
| 7 | 652925 | 653143 | - | NC_008639.1 | Chlorobium phaeobacteroides DSM 266 |
| 8 | 707657 | 707875 | - | NC_010803.1 | Chlorobium limicola DSM 245 |
| 9 | 734310 | 734528 | - | NC_011060.1 | Pelodictyon phaeoclathratiforme BU-1 |
| 10 | 3080553 | 3080789 | + | NZ_CP011971.1 | Steroidobacter denitrificans |
| 11 | 6224445 | 6224681 | + | NC_013440.1 | Haliangium ochraceum DSM 14365 |
| 12 | 18305 | 18538 | - | NZ_CP054205.1 | Pseudomonas rhodesiae |
| 13 | 3476504 | 3476740 | + | NC_010170.1 | Bordetella petrii |
| 14 | 328121 | 328354 | + | NZ_CP070503.1 | Pseudomonas atacamensis |
| 15 | 5918759 | 5918992 | - | NZ_CP023272.1 | Pseudomonas lurida |
| 16 | 5961226 | 5961459 | - | NZ_CP010896.1 | Pseudomonas simiae |
| 17 | 6797027 | 6797260 | + | NZ_CP012400.2 | Pseudomonas yamanorum |
| 18 | 3246537 | 3246773 | - | NZ_CP013189.1 | Pseudohongiella spirulinae |
| 19 | 1910261 | 1910494 | - | NZ_AP014569.1 | Serpentinomonas mccroryi |
| 20 | 3202726 | 3202962 | + | NZ_CP053986.1 | Achromobacter denitrificans |
| 21 | 3737096 | 3737329 | + | NZ_CP009533.1 | Pseudomonas rhizosphaerae |
| 22 | 4618559 | 4618792 | - | NZ_CP012676.1 | Pseudomonas versuta |
| 23 | 850808 | 851041 | - | NZ_CP049044.1 | Pseudomonas psychrophila |
| 24 | 5722609 | 5722842 | - | NZ_CP027723.1 | Pseudomonas orientalis |
| 25 | 6334971 | 6335204 | - | NZ_CP027756.1 | Pseudomonas synxantha |
| 26 | 18567 | 18800 | - | NZ_CP051487.1 | Pseudomonas umsongensis |
| 27 | 4088858 | 4089091 | + | NZ_CP005960.1 | Pseudomonas mandelii JR-1 |
| 28 | 4089325 | 4089558 | + | NZ_CP005960.1 | Pseudomonas mandelii JR-1 |
| 29 | 6630204 | 6630437 | - | NZ_CP014870.1 | Pseudomonas silesiensis |
| 30 | 6661310 | 6661543 | - | NZ_CP018420.1 | Pseudomonas veronii |
| 31 | 2224579 | 2224818 | + | NZ_CP032382.1 | Chryseolinea soli |
| 32 | 201297 | 201533 | - | NC_013851.1 | Allochromatium vinosum DSM 180 |
| 33 | 1117773 | 1118009 | - | NZ_CP016440.1 | Bordetella pseudohinzii |
| 34 | 2861763 | 2861999 | - | NZ_CP021395.1 | Bordetella hinzii |
| 35 | 1170650 | 1170886 | - | NZ_AP019378.1 | Bordetella parapertussis |
| 36 | 3219230 | 3219466 | + | NZ_LR134326.1 | Bordetella bronchiseptica |
| 37 | 3328172 | 3328405 | - | NZ_CP014262.1 | Pseudomonas corrugata |
| 38 | 6120229 | 6120462 | - | NZ_CP029608.1 | Pseudomonas kribbensis |
| 39 | 4897957 | 4898190 | + | NZ_CP014205.2 | Pseudomonas glycinae |
| 40 | 6371499 | 6371732 | - | NZ_CP062253.1 | Pseudomonas gozinkensis |
| 41 | 6349523 | 6349756 | - | NZ_CP062252.1 | Pseudomonas allokribbensis |
| 42 | 6469552 | 6469785 | - | NZ_CP035088.1 | Pseudomonas viciae |
| 43 | 4398924 | 4399157 | + | NZ_CP048810.1 | Pseudomonas bijieensis |
| 44 | 6553401 | 6553634 | - | NZ_CP034725.1 | Pseudomonas brassicacearum |
| 45 | 711216 | 711452 | - | NZ_CP043146.1 | Bordetella holmesii |
| 46 | 1236560 | 1236796 | + | NZ_CP009238.1 | Basilea psittacipulmonis DSM 24701 |
| 47 | 830986 | 831222 | - | NZ_LN614830.1 | Tatlockia micdadei |
| 48 | 1814325 | 1814561 | - | NZ_CP038034.1 | Achromobacter insolitus |
| 49 | 795805 | 796041 | + | NZ_LR134365.1 | Cardiobacterium hominis |
| 50 | 4740871 | 4741107 | - | NZ_CP035467.1 | Methylotuvimicrobium buryatense |
| 51 | 3614070 | 3614306 | + | NZ_CP041783.1 | Shewanella donghaensis |
| 52 | 407344 | 407580 | + | NZ_CP020472.1 | Shewanella japonica |
| 53 | 4480947 | 4481183 | - | NC_016112.1 | Methylotuvimicrobium alcaliphilum 20Z |
| 54 | 3078772 | 3079008 | + | NZ_LT907988.1 | Orrella dioscoreae |
| 55 | 4565113 | 4565349 | - | NC_008345.1 | Shewanella frigidimarina NCIMB 400 |
| 56 | 4174091 | 4174327 | + | NZ_CP043042.1 | Marinobacter fonticola |
| 57 | 4569844 | 4570080 | - | NZ_LR134302.1 | Achromobacter spanius |
| 58 | 2409482 | 2409721 | - | NC_014759.1 | Marivirga tractuosa DSM 4126 |
| 59 | 3484166 | 3484402 | + | NC_017506.1 | Marinobacter adhaerens HP15 |
| 60 | 577997 | 578233 | + | NZ_CP034015.1 | Shewanella livingstonensis |
| 61 | 2680313 | 2680549 | + | NC_010645.1 | Bordetella avium 197N |
| 62 | 669253 | 669489 | - | NZ_CP020931.1 | Marinobacter salarius |
| 63 | 5203510 | 5203746 | + | NZ_CP021425.1 | Oleiphilus messinensis |
| 64 | 471107 | 471343 | + | NZ_AP014879.1 | Sulfuricaulis limicola |
| 65 | 667984 | 668223 | - | NC_017464.1 | Ignavibacterium album JCM 16511 |
| 66 | 2827819 | 2828055 | + | NZ_CP036200.1 | Shewanella maritima |
| 67 | 3626910 | 3627146 | + | NZ_CP051180.1 | Ferrimonas lipolytica |
| 68 | 365439 | 365675 | + | NC_007954.1 | Shewanella denitrificans OS217 |
| 69 | 3687442 | 3687678 | + | NZ_CP011494.1 | Marinobacter psychrophilus |
| 70 | 3707693 | 3707929 | - | NZ_CP017715.1 | Marinobacter salinus |
| 71 | 2930834 | 2931070 | + | NZ_LN614827.1 | Legionella fallonii LLAP-10 |
| 72 | 3251552 | 3251785 | + | NZ_CP054840.1 | Acidovorax antarcticus |
| 73 | 2539852 | 2540088 | - | NC_008789.1 | Halorhodospira halophila SL1 |
| 74 | 576727 | 576963 | - | NC_013960.1 | Nitrosococcus halophilus Nc 4 |
| 75 | 548324 | 548560 | - | NZ_CP039268.1 | Thermochromatium tepidum ATCC 43061 |
| 76 | 1197658 | 1197891 | - | NZ_CP017476.1 | Hydrogenophaga crassostreae |
| 77 | 5912158 | 5912394 | - | NZ_CP043311.1 | Pseudomonas lalkuanensis |
| 78 | 170202 | 170438 | + | NZ_AP022642.1 | Pseudomonas otitidis |
| 79 | 582392 | 582628 | + | NZ_CP072793.1 | Thiothrix unzii |
| 80 | 166858 | 167091 | + | NZ_CP007039.1 | Pseudomonas cichorii JBC1 |
| 81 | 545716 | 545952 | - | NZ_CP022987.1 | Pusillimonas thiosulfatoxidans |
| 82 | 174405 | 174641 | - | NZ_CP016268.1 | Woeseia oceani |
| 83 | 2358079 | 2358315 | - | NZ_CP026328.2 | Acidithiobacillus caldus |
| 84 | 739710 | 739946 | - | NZ_CP059564.1 | Alysiella filiformis |
| 85 | 209714 | 209950 | + | NZ_LR134418.1 | Legionella adelaidensis |
| 86 | 754615 | 754851 | + | NC_022357.1 | Sulfuricella denitrificans skB26 |
| 87 | 1240810 | 1241046 | - | NZ_HG916765.1 | Castellaniella defragrans 65Phen |
| 88 | 2680426 | 2680662 | + | NZ_CP003915.1 | Advenella mimigardefordensis DPN7 |
| 89 | 154341 | 154577 | + | NZ_AP017372.2 | Halorhodospira halochloris |
| 90 | 271164 | 271400 | - | NZ_AP018725.1 | Sulfuriflexus mobilis |
| 91 | 4193089 | 4193325 | - | NZ_CP011835.1 | Azotobacter chroococcum |
| 92 | 127142 | 127375 | - | NZ_CP062158.2 | Pseudomonas lundensis |
| 93 | 3195093 | 3195329 | + | NZ_CP045302.1 | Azotobacter salinestris |
| 94 | 4869293 | 4869529 | - | NC_012560.1 | Azotobacter vinelandii DJ |
| 95 | 18392 | 18628 | - | NZ_CP046621.1 | Pseudomonas alkylphenolica |
| 96 | 18483 | 18719 | - | NZ_CP071706.1 | Pseudomonas donghuensis |
| 97 | 5794801 | 5795037 | - | NZ_CP022562.1 | Pseudomonas monteilii |
| 98 | 6048521 | 6048757 | - | NC_021505.1 | Pseudomonas putida NBRC 14164 |
| 99 | 4791226 | 4791462 | - | NZ_CP009365.1 | Pseudomonas soli |
| 100 | 6203979 | 6204215 | - | NZ_CP056030.1 | Pseudomonas eucalypticola |
| 101 | 6628616 | 6628849 | - | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 102 | 6664810 | 6665046 | - | NZ_LS999205.1 | Pseudomonas protegens CHA0 |
| 103 | 2945514 | 2945750 | - | NZ_CP045571.1 | Acidithiobacillus thiooxidans ATCC 19377 |
| 104 | 659400 | 659636 | + | NZ_CP013119.1 | Alcaligenes faecalis |
| 105 | 1435015 | 1435251 | - | NZ_CP012362.1 | Oblitimonas alkaliphila |
| 106 | 2237131 | 2237367 | - | NZ_CP047165.1 | Pelistega ratti |
| 107 | 1760125 | 1760361 | - | NC_017964.1 | Advenella kashmirensis WT001 |
| 108 | 120813 | 121049 | + | NZ_CP041036.1 | Shewanella polaris |
| 109 | 2464350 | 2464571 | + | NC_018014.1 | Terriglobus roseus DSM 18391 |
| 110 | 2924871 | 2925092 | + | NC_018014.1 | Terriglobus roseus DSM 18391 |
| 111 | 579659 | 579895 | + | NZ_CP060009.1 | Pseudomonas sediminis |
| 112 | 266124 | 266360 | + | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 113 | 1926629 | 1926865 | - | NZ_CP070505.1 | Pseudomonas toyotomiensis |
| 114 | 5120395 | 5120631 | - | NZ_CP068551.1 | Pseudomonas khazarica |
| 115 | 5597576 | 5597812 | - | NZ_CP024159.1 | Pseudomonas mosselii |
| 116 | 1351977 | 1352210 | - | NZ_CP051298.1 | Alicycliphilus denitrificans |
| 117 | 258642 | 258875 | + | NZ_CP068034.2 | Pseudomonas syringae |
| 118 | 22054 | 22287 | - | NZ_CP067022.1 | Pseudomonas cannabina pv. alisalensis |
| 119 | 172234 | 172467 | + | NZ_CP042804.1 | Pseudomonas amygdali pv. tabaci str. ATCC 11528 |
| 120 | 110860 | 111093 | + | NC_004578.1 | Pseudomonas syringae pv. tomato str. DC3000 |
| 121 | 348754 | 348990 | - | NC_015696.1 | Francisella salina |
| 122 | 1450347 | 1450583 | + | NZ_CP043552.1 | Francisella marina |
| 123 | 43758 | 43994 | + | NZ_AP018724.1 | Sulfurivermis fontis |
| 124 | 3335759 | 3335998 | + | NZ_CP047897.1 | Nibribacter ruber |
| 125 | 2569928 | 2570164 | - | NZ_AP014936.1 | Sulfurifustis variabilis |
| 126 | 281232 | 281468 | + | NZ_CP038033.1 | Nitrosococcus wardiae |
| 127 | 1635312 | 1635545 | + | NZ_CP060783.1 | Diaphorobacter aerolatus |
| 128 | 4057374 | 4057610 | + | NZ_CP044399.1 | Moritella marina ATCC 15381 |
| 129 | 3779433 | 3779669 | - | NZ_CP044399.1 | Moritella marina ATCC 15381 |
| 130 | 5985883 | 5986119 | - | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 131 | 733042 | 733278 | - | NC_015844.1 | Zobellia galactanivorans |
| 132 | 441047 | 441283 | + | NC_016901.1 | Shewanella baltica OS678 |
| 133 | 584054 | 584290 | + | NC_004556.1 | Xylella fastidiosa Temecula1 |
| 134 | 1925637 | 1925870 | - | NZ_AP014568.1 | Serpentinomonas raichei |
| 135 | 599377 | 599613 | + | NC_015942.1 | Acidithiobacillus ferrivorans SS3 |
| 136 | 403359 | 403595 | + | NZ_CP022358.1 | Shewanella bicestrii |
| 137 | 3780744 | 3780980 | + | NZ_CP031146.1 | Pseudomonas plecoglossicida |
| 138 | 5747999 | 5748235 | - | NC_008027.1 | Pseudomonas entomophila L48 |
| 139 | 2042544 | 2042780 | - | NZ_CP021376.1 | Oceanisphaera avium |
| 140 | 475574 | 475810 | - | NZ_CP038254.1 | Legionella israelensis |
| 141 | 120171 | 120407 | + | NZ_CP010427.1 | Allofrancisella guangzhouensis |
| 142 | 4123444 | 4123680 | - | NZ_CP019650.1 | Microbulbifer agarilyticus |
| 143 | 718705 | 718941 | + | NZ_CP019448.1 | Simonsiella muelleri ATCC 29453 |
| 144 | 2399582 | 2399818 | + | NC_018518.1 | Bordetella pertussis 18323 |
| 145 | 615805 | 616041 | - | NZ_AP018795.1 | Acidithiobacillus ferridurans |
| 146 | 2371072 | 2371308 | - | NC_011761.1 | Acidithiobacillus ferrooxidans ATCC 23270 |
| 147 | 1487678 | 1487914 | + | NZ_CP022375.1 | Francisella opportunistica |
| 148 | 3719379 | 3719615 | - | NZ_CP037951.1 | Parashewanella tropica |
| 149 | 127500 | 127736 | + | NZ_CP047491.1 | Microbulbifer hydrolyticus |
| 150 | 3812237 | 3812473 | - | NZ_CP014864.1 | Microbulbifer thermotolerans |
| 151 | 2163792 | 2164028 | + | NZ_CP052766.1 | Alteromonas pelagimontana |
| 152 | 4376206 | 4376442 | - | NZ_CP031769.1 | Salinimonas sediminis |
| 153 | 1712751 | 1712987 | + | NZ_CP021781.1 | Francisella adeliensis |
| 154 | 3894861 | 3895097 | - | NZ_CP022272.1 | Shewanella marisflavi |
| 155 | 4166357 | 4166593 | - | NC_009092.1 | Shewanella loihica PV-4 |
| 156 | 406259 | 406492 | - | NZ_CP059565.1 | Neisseria wadsworthii |
| 157 | 106043 | 106270 | + | NC_016631.1 | Granulicella mallensis MP5ACTX8 |
| 158 | 20185 | 20421 | + | NZ_CP046670.1 | Alteromonas mediterranea |
| 159 | 218904 | 219140 | - | NZ_CP038017.1 | Allofrancisella frigidaquae |
| 160 | 219641 | 219877 | - | NZ_CP038241.1 | Allofrancisella inopinata |
| 161 | 61999 | 62235 | + | NC_016041.1 | Glaciecola nitratireducens FR1064 |
| 162 | 2294702 | 2294938 | + | NC_011566.1 | Shewanella piezotolerans WP3 |
| 163 | 451208 | 451444 | + | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 164 | 1936248 | 1936484 | + | NZ_CP021377.1 | Oceanisphaera profunda |
| 165 | 2994954 | 2995190 | + | NC_007484.1 | Nitrosococcus oceani ATCC 19707 |
| 166 | 118801 | 119037 | + | NZ_AP014635.1 | Vibrio tritonius |
| 167 | 3006986 | 3007222 | - | NZ_CP072844.1 | Psychrosphaera aestuarii |
| 168 | 59706 | 59942 | + | NZ_CP008849.1 | Alteromonas australica |
| 169 | 6554188 | 6554424 | + | NZ_CP020038.1 | Agarilytica rhodophyticola |
| 170 | 132334 | 132570 | + | NZ_CP031416.1 | Gallaecimonas mangrovi |
| 171 | 58398 | 58634 | - | NZ_CP029347.1 | Saliniradius amylolyticus |
| 172 | 5530378 | 5530614 | - | NC_010506.1 | Shewanella woodyi ATCC 51908 |
| 173 | 4654983 | 4655219 | - | NC_014012.1 | Shewanella violacea DSS12 |
| 174 | 4529509 | 4529745 | - | NZ_CP046378.1 | Shewanella algae |
| 175 | 3180109 | 3180345 | + | NC_013861.1 | Legionella longbeachae NSW150 |
| 176 | 2854963 | 2855199 | + | NZ_CP025491.2 | Legionella sainthelensi |
| 177 | 2947119 | 2947355 | - | NZ_LS483250.1 | Moritella yayanosii |
| 178 | 3225146 | 3225382 | + | NZ_LS483250.1 | Moritella yayanosii |
| 179 | 1095755 | 1095991 | - | NZ_CP014056.2 | Grimontia hollisae |
| 180 | 496515 | 496751 | - | NC_014315.1 | Nitrosococcus watsonii C-113 |
| 181 | 3566341 | 3566577 | - | NZ_CP007031.1 | Marichromatium purpuratum 984 |
| 182 | 4974870 | 4975106 | - | NZ_CP037952.1 | Parashewanella spongiae |
| 183 | 1017673 | 1017909 | - | NC_007645.1 | Hahella chejuensis KCTC 2396 |
| 184 | 2855663 | 2855899 | - | NZ_AP019651.1 | Vibrio taketomensis |
| 185 | 156345 | 156581 | + | NZ_CP045350.1 | Vibrio aquimaris |
| 186 | 3795945 | 3796181 | + | NZ_CP040449.1 | Aeromonas simiae |
| 187 | 141120 | 141356 | + | NZ_CP046570.1 | Xanthomonas albilineans |
| 188 | 479235 | 479471 | + | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 189 | 2717383 | 2717619 | - | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 190 | 208955 | 209191 | - | NC_013456.1 | Vibrio antiquarius |
| 191 | 189051 | 189287 | + | NZ_CP030788.1 | Vibrio campbellii |
| 192 | 115154 | 115390 | + | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 193 | 154843 | 155079 | + | NZ_CP071325.1 | Photobacterium ganghwense |
| 194 | 1622398 | 1622634 | - | NZ_CP019959.1 | Vibrio owensii |
| 195 | 405877 | 406113 | + | NZ_CP009467.1 | Vibrio harveyi |
| 196 | 500504 | 500740 | + | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 197 | 26302 | 26535 | - | NZ_CP016278.1 | Diaphorobacter polyhydroxybutyrativorans |
| 198 | 2735409 | 2735645 | + | NZ_CP034759.1 | Litorilituus sediminis |
| 199 | 644518 | 644754 | + | NZ_CP060092.1 | Teredinibacter purpureus |
| 200 | 2694443 | 2694679 | + | NZ_CP035688.1 | Vibrio metoecus |
| 201 | 104947 | 105183 | + | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 202 | 231494 | 231730 | - | NC_011312.1 | Aliivibrio salmonicida LFI1238 |
| 203 | 338403 | 338639 | + | NZ_CP044069.1 | Vibrio vulnificus |
| 204 | 4663707 | 4663943 | - | NC_009901.1 | Shewanella pealeana ATCC 700345 |
| 205 | 3796572 | 3796808 | - | NZ_CP014782.1 | Shewanella psychrophila |
| 206 | 505345 | 505581 | + | NC_010334.1 | Shewanella halifaxensis HAW-EB4 |
| 207 | 567185 | 567418 | + | NZ_CP020121.1 | Comamonas kerstersii |
| 208 | 330258 | 330494 | + | NZ_CP069213.1 | Shewanella litorisediminis |
| 209 | 395265 | 395501 | + | NC_008700.1 | Shewanella amazonensis SB2B |
| 210 | 4549553 | 4549789 | + | NZ_CP020373.1 | Shewanella khirikhana |
| 211 | 5417916 | 5418152 | + | NZ_CP048832.1 | Janthinobacterium lividum |
| 212 | 518099 | 518335 | - | NZ_CP022355.1 | Paraphotobacterium marinum |
| 213 | 2281622 | 2281858 | - | NZ_AP018689.1 | Vibrio aphrogenes |
| 214 | 2556362 | 2556598 | - | NZ_AP018685.1 | Vibrio rumoiensis |
| 215 | 2956342 | 2956578 | - | NZ_CP047475.1 | Vibrio astriarenae |
| 216 | 2934682 | 2934918 | - | NZ_CP032093.1 | Vibrio alfacsensis |
| 217 | 2611280 | 2611516 | - | NZ_CP014035.2 | Vibrio fluvialis |
| 218 | 1296963 | 1297199 | - | NZ_CP065150.1 | Vibrio kanaloae |
| 219 | 3028213 | 3028449 | + | NZ_AP019657.1 | Vibrio ponticus |
| 220 | 628701 | 628937 | + | NZ_CP040990.1 | Vibrio furnissii |
| 221 | 3069808 | 3070044 | - | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 222 | 180319 | 180555 | + | NC_011753.2 | Vibrio atlanticus |
| 223 | 2918376 | 2918612 | - | NZ_CP018312.1 | Vibrio rotiferianus |
| 224 | 3162194 | 3162430 | - | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 225 | 2033889 | 2034125 | - | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 226 | 736365 | 736601 | + | NZ_CP053627.1 | Xylella taiwanensis |
| 227 | 171489 | 171725 | + | NZ_CP046268.1 | Vibrio spartinae |
| 228 | 137758 | 137994 | + | NZ_CP033078.1 | Vibrio zhugei |
| 229 | 65728 | 65964 | + | NZ_CP036536.1 | Salinimonas lutimaris |
| 230 | 1267428 | 1267664 | - | NZ_HG322949.1 | Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 |
| 231 | 3721241 | 3721477 | + | NZ_CP060084.1 | Teredinibacter haidensis |
| 232 | 2699232 | 2699468 | + | NZ_CP016397.1 | Legionella clemsonensis |
| 233 | 4597637 | 4597873 | - | NZ_CP028897.1 | Dongshaea marina |
| 234 | 4204688 | 4204924 | - | NC_010995.1 | Cellvibrio japonicus Ueda107 |
| 235 | 2715138 | 2715374 | - | NZ_CP022741.1 | Vibrio qinghaiensis |
| 236 | 1694468 | 1694704 | - | NZ_CP046793.1 | Vibrio metschnikovii |
| 237 | 5358186 | 5358422 | + | NZ_CP023422.1 | Janthinobacterium svalbardensis |
| 238 | 3007513 | 3007749 | + | NZ_CP041185.1 | Janthinobacterium tructae |
| 239 | 3576974 | 3577210 | + | NC_018012.1 | Thiocystis violascens DSM 198 |
| 240 | 4531460 | 4531696 | - | NZ_LR215729.2 | Pseudomonas marincola |
| 241 | 3218884 | 3219120 | - | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 242 | 62264 | 62500 | + | NZ_CP014322.1 | Alteromonas addita |
| 243 | 4193444 | 4193680 | - | NC_015554.1 | Alteromonas naphthalenivorans |
| 244 | 3962147 | 3962383 | - | NZ_CP014544.1 | Zhongshania aliphaticivorans |
| 245 | 578156 | 578392 | - | NZ_LN681225.1 | Legionella hackeliae |
| 246 | 2872238 | 2872474 | - | NZ_CP016414.1 | Vibrio scophthalmi |
| 247 | 3443666 | 3443902 | - | NZ_CP021435.1 | Halomonas beimenensis |
| 248 | 89389 | 89625 | + | NZ_CP004387.1 | Alcanivorax pacificus W11-5 |
| 249 | 775206 | 775442 | - | NZ_CP048812.1 | Halomonas socia |
| 250 | 1747166 | 1747402 | - | NZ_CP020465.1 | Cognaticolwellia beringensis |
| 251 | 2125621 | 2125857 | + | NZ_CP018139.1 | Halomonas aestuarii |
| 252 | 4213985 | 4214221 | - | NZ_CP061007.1 | Saccharopolyspora spinosa |
| 253 | 188929 | 189165 | + | NZ_CP009056.1 | Frischella perrara |
| 254 | 314024 | 314260 | - | NZ_CP007445.1 | Gilliamella apicola |
| 255 | 1957063 | 1957296 | - | NC_008786.1 | Verminephrobacter eiseniae EF01-2 |
| 256 | 1875914 | 1876150 | + | NZ_CP019343.1 | Oceanicoccus sagamiensis |
| 257 | 1187406 | 1187639 | - | NZ_CP027792.1 | Pulveribacter suum |
| 258 | 332905 | 333111 | + | NZ_AP023049.1 | Alistipes indistinctus |
| 259 | 5758499 | 5758735 | + | NZ_CP031142.1 | Saccharopolyspora pogona |
| 260 | 196980 | 197216 | - | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 261 | 218319 | 218555 | + | NC_003910.7 | Colwellia psychrerythraea 34H |
| 262 | 29721 | 29957 | + | NZ_CP031961.1 | Pseudoalteromonas tunicata |
| 263 | 3787473 | 3787706 | + | NC_008752.1 | Acidovorax citrulli AAC00-1 |
| 264 | 3983110 | 3983343 | + | NZ_CP037867.1 | Hydrogenophaga pseudoflava |
| 265 | 3078427 | 3078663 | - | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 266 | 3156931 | 3157167 | - | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 267 | 3234996 | 3235232 | - | NZ_CP011028.1 | Pseudoalteromonas espejiana DSM 9414 |
| 268 | 3153009 | 3153245 | - | NZ_CP027523.1 | Pseudoalteromonas carrageenovora |
| 269 | 3373988 | 3374224 | - | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 270 | 1341887 | 1342123 | - | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 271 | 3300044 | 3300280 | - | NZ_CP022163.1 | Melittangium boletus DSM 14713 |
| 272 | 497974 | 498210 | - | NZ_CP022379.1 | Capnocytophaga sputigena |
| 273 | 2506848 | 2507084 | - | NZ_CP022022.1 | Capnocytophaga endodontalis |
| 274 | 1726117 | 1726353 | - | NZ_CP023698.1 | Streptomyces viridifaciens |
| 275 | 1656079 | 1656315 | - | NZ_CP023698.1 | Streptomyces viridifaciens |
| 276 | 4873579 | 4873815 | - | NZ_CP021978.1 | Streptomyces hawaiiensis |
| 277 | 81510 | 81746 | + | NZ_LR134376.1 | Aeromonas encheleia |
| 278 | 3358990 | 3359226 | + | NZ_CP044060.1 | Aeromonas veronii |
| 279 | 3607259 | 3607495 | + | NZ_CP065745.1 | Aeromonas allosaccharophila |
| 280 | 124686 | 124922 | + | NZ_AP022188.1 | Aeromonas media |
| 281 | 174398 | 174634 | + | NZ_CP050851.1 | Aeromonas hydrophila |
| 282 | 6671093 | 6671329 | + | NZ_CP029254.1 | Streptomyces spongiicola |
| 283 | 3665596 | 3665832 | + | NZ_CP051883.1 | Aeromonas salmonicida |
| 284 | 6431785 | 6432021 | + | NZ_CP029188.1 | Streptomyces tirandamycinicus |
| 285 | 7509639 | 7509875 | + | NZ_CP027306.1 | Streptomyces atratus |
| 286 | 5484840 | 5485076 | - | NZ_CP070326.1 | Streptomyces noursei |
| 287 | 7476536 | 7476772 | - | NZ_CP029043.1 | Streptomyces nigra |
| 288 | 2129918 | 2130154 | - | NZ_CP014671.1 | Immundisolibacter cernigliae |
| 289 | 2921224 | 2921460 | + | NC_010296.1 | Microcystis aeruginosa NIES-843 |
| 290 | 3898610 | 3898846 | + | NZ_CP022753.1 | Nocardiopsis gilva YIM 90087 |
| 291 | 3172184 | 3172420 | + | NC_011729.1 | Gloeothece citriformis PCC 7424 |
| 292 | 3525408 | 3525644 | + | NZ_CP060822.1 | Cylindrospermopsis curvispora GIHE-G1 |
| 293 | 1250703 | 1250939 | - | NZ_CP018092.1 | Synechococcus lividus PCC 6715 |
| 294 | 2112006 | 2112242 | + | NC_007204.1 | Psychrobacter arcticus 273-4 |
| 295 | 2450711 | 2450947 | + | NC_007969.1 | Psychrobacter cryohalolentis K5 |
| 296 | 2702264 | 2702500 | + | NZ_CP014945.1 | Psychrobacter alimentarius |
| 297 | 5917743 | 5917979 | - | NZ_CP034463.1 | Streptomyces aquilus |
| 298 | 1943062 | 1943298 | + | NC_019753.1 | Crinalium epipsammum PCC 9333 |
| 299 | 5096461 | 5096697 | - | NC_014501.1 | Gloeothece verrucosa PCC 7822 |
| 300 | 2727967 | 2728203 | + | NC_009925.1 | Acaryochloris marina MBIC11017 |
| 301 | 7323109 | 7323345 | + | NZ_CP024957.1 | Streptomyces cavourensis |
| 302 | 7194278 | 7194514 | + | NZ_CP072931.1 | Streptomyces auratus AGR0001 |
| 303 | 5082222 | 5082458 | - | NZ_CP015098.1 | Streptomyces qaidamensis |
| 304 | 7129588 | 7129824 | - | NZ_CP010407.1 | Streptomyces vietnamensis |
| 305 | 7696758 | 7696994 | + | NC_021177.1 | Streptomyces fulvissimus DSM 40593 |
| 306 | 7587970 | 7588206 | - | NZ_CP023692.1 | Streptomyces vinaceus |
| 307 | 7566380 | 7566616 | + | NZ_CP019457.1 | Streptomyces lydicus |
| 308 | 951862 | 952098 | - | NZ_CP060404.1 | Streptomyces buecherae |
| 309 | 3071067 | 3071303 | + | NZ_CP031194.1 | Streptomyces paludis |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP011971.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00471.22 | 0.92 | 281 | 14.0 | same-strand | Ribosomal protein L33 |
++ More..