* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_003197.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF13698.8
|
1.0
|
2
|
3075.0
|
opposite-strand
|
Domain of unknown function (DUF4156)
|
2
|
PF15922.7
|
1.0
|
2
|
2170.0
|
same-strand
|
YjeJ-like
|
3
|
PF04055.23
|
1.0
|
2
|
859.0
|
same-strand
|
Radical SAM superfamily
|
4
|
PF09285.13
|
1.0
|
2
|
252.0
|
opposite-strand
|
Elongation factor P, C-terminal
|
5
|
PF08207.14
|
1.0
|
2
|
252.0
|
opposite-strand
|
Elongation factor P (EF-P) KOW-like domain
|
6
|
PF01132.22
|
1.0
|
2
|
252.0
|
opposite-strand
|
Elongation factor P (EF-P) OB domain
|
7
|
PF08085.13
|
1.0
|
2
|
32.0
|
opposite-strand
|
Entericidin EcnA/B family
|
8
|
PF00196.21
|
1.0
|
2
|
178.5
|
same-strand
|
Bacterial regulatory proteins, luxR family
|
9
|
PF08281.14
|
1.0
|
2
|
178.5
|
same-strand
|
Sigma-70, region 4
|
10
|
PF00893.21
|
1.0
|
2
|
1023.0
|
opposite-strand
|
Small Multidrug Resistance protein
|
11
|
PF08212.14
|
1.0
|
2
|
1358.0
|
same-strand
|
Lipocalin-like domain
|
12
|
PF00061.25
|
1.0
|
2
|
1358.0
|
same-strand
|
Lipocalin / cytosolic fatty-acid binding protein family
|
13
|
PF02313.19
|
1.0
|
2
|
2002.5
|
same-strand
|
Fumarate reductase subunit D
|
++ More..