* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_003197.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF05656.16
|
0.67
|
2
|
4598.5
|
opposite-strand
|
Protein of unknown function (DUF805)
|
2
|
PF00175.23
|
0.67
|
2
|
3747.5
|
same-strand
|
Oxidoreductase NAD-binding domain
|
3
|
PF03320.15
|
1.0
|
3
|
2641
|
same-strand
|
Bacterial fructose-1,6-bisphosphatase, glpX-encoded
|
4
|
PF00370.23
|
1.0
|
3
|
1021
|
same-strand
|
FGGY family of carbohydrate kinases, N-terminal domain
|
5
|
PF02782.18
|
1.0
|
3
|
1021
|
same-strand
|
FGGY family of carbohydrate kinases, C-terminal domain
|
6
|
PF00230.22
|
1.0
|
3
|
155
|
same-strand
|
Major intrinsic protein
|
7
|
PF06005.14
|
1.0
|
3
|
191
|
opposite-strand
|
Cell division protein ZapB
|
8
|
PF03737.17
|
1.0
|
3
|
652
|
same-strand
|
Aldolase/RraA
|
9
|
PF01040.20
|
1.0
|
3
|
1230
|
same-strand
|
UbiA prenyltransferase family
|
10
|
PF07724.16
|
1.0
|
3
|
2223
|
same-strand
|
AAA domain (Cdc48 subfamily)
|
11
|
PF00227.28
|
1.0
|
3
|
3564
|
same-strand
|
Proteasome subunit
|
++ More..