* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_003197.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00005.29
|
1.0
|
3
|
4209
|
same-strand
|
ABC transporter
|
2
|
PF12399.10
|
1.0
|
3
|
3669
|
same-strand
|
Branched-chain amino acid ATP-binding cassette transporter
|
3
|
PF02653.18
|
1.0
|
3
|
1931.5
|
same-strand
|
Branched-chain amino acid transport system / permease component
|
4
|
PF11862.10
|
1.0
|
3
|
2395
|
same-strand
|
Domain of unknown function (DUF3382)
|
5
|
PF13458.8
|
1.0
|
3
|
468.5
|
same-strand
|
Periplasmic binding protein
|
6
|
PF01094.30
|
1.0
|
3
|
468.5
|
same-strand
|
Receptor family ligand binding region
|
7
|
PF13433.8
|
1.0
|
3
|
468.5
|
same-strand
|
Periplasmic binding protein domain
|
8
|
PF12568.10
|
1.0
|
3
|
58
|
opposite-strand
|
Acetyltransferase (GNAT) domain, PanZ
|
9
|
PF04545.18
|
1.0
|
3
|
2061
|
same-strand
|
Sigma-70, region 4
|
10
|
PF04542.16
|
1.0
|
3
|
2061
|
same-strand
|
Sigma-70 region 2
|
11
|
PF18075.3
|
1.0
|
3
|
3161
|
same-strand
|
FtsX extracellular domain
|
12
|
PF02687.23
|
1.0
|
3
|
3161
|
same-strand
|
FtsX-like permease family
|
++ More..