* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_003197.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00108.25
|
1.0
|
2
|
4334.5
|
same-strand
|
Thiolase, N-terminal domain
|
2
|
PF02803.20
|
1.0
|
2
|
4334.5
|
same-strand
|
Thiolase, C-terminal domain
|
3
|
PF04175.14
|
1.0
|
2
|
3880.0
|
same-strand
|
Protein of unknown function (DUF406)
|
4
|
PF03349.18
|
1.0
|
2
|
2171.0
|
opposite-strand
|
Outer membrane protein transport protein (OMPP1/FadL/TodX)
|
5
|
PF04333.15
|
1.0
|
2
|
1356.0
|
same-strand
|
MlaA lipoprotein
|
6
|
PF01226.19
|
1.0
|
2
|
117.0
|
opposite-strand
|
Formate/nitrite transporter
|
++ More..